NO11G02380, NO11G02380 (gene) Nannochloropsis oceanica

Overview
NameNO11G02380
Unique NameNO11G02380
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2382
Alignment locationchr11:759330..761711 +

Link to JBrowse

Properties
Property NameValue
DescriptionSANT/Myb domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:759330..761711 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR009057Homeodomain-like
IPR017930Myb_dom
IPR001005SANT/Myb
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Homology
[Close]
BLAST of NO11G02380 vs. NCBI_GenBank
Match: CBJ27465.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 73.2 bits (178), Expect = 2.900e-9
Identity = 34/70 (48.57%), Postives = 45/70 (64.29%), Query Frame = 0 
Query:  103 KDNGHWTDEEHEFFLECWAKYGKSWKKISEVMKTRTNEQVRTHAQKYFAKLNQLRTCGYEGNYAMDGTRH 173
            K+ G WT +EH  FL     +GK WKKI+ ++KTRT  Q+RTHAQKYF K+ + +  G  G+ AMD   H
Sbjct:    4 KNTGRWTYDEHRLFLRGLELHGKGWKKIASLIKTRTVVQIRTHAQKYFQKIAKAKQNGEHGDVAMDSKGH 73
[Close]
BLAST of NO11G02380 vs. NCBI_GenBank
Match: GAX28359.1 (protein MYSM1 [Fistulifera solaris])

HSP 1 Score: 73.2 bits (178), Expect = 2.900e-9
Identity = 43/115 (37.39%), Postives = 64/115 (55.65%), Query Frame = 0 
Query:  103 KDNGHWTDEEHEFFLECWAKYGKSWKKISEVMKTRTNEQVRTHAQKYFAKLNQLRTCGYEGNYAMDG-------TRHLTKTFLKKAQRQGRISPGKLKTSFKMTSSRSVVKKRGN 211
            ++ G WT EEH  FL+   ++GK WKKI+ ++K+RT  Q+RTHAQKYF KL + R  G EG+  M+G       T + T T     +R+  I+  K K    + +S     K+ +
Sbjct:   97 ENTGRWTAEEHRLFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAKARQNGEEGDITMEGRGGNASITSNTTATAAMTNKRRRHITGTKRKVIQSIVASAQRQAKKAH 211
[Close]
BLAST of NO11G02380 vs. NCBI_GenBank
Match: CDW79668.1 (myb-like dna-binding shaqkyf class family protein [Stylonychia lemnae])

HSP 1 Score: 72.0 bits (175), Expect = 6.400e-9
Identity = 33/55 (60.00%), Postives = 40/55 (72.73%), Query Frame = 0 
Query:  101 EKKDNGHWTDEEHEFFLECWAKYGKSWKKISEVMKTRTNEQVRTHAQKYFAKLNQ 156
            +K +NG WT EEH  FLE   KYGK+W K+ E +KTR  +QVR+HAQKYF KL Q
Sbjct:  169 QKVNNGRWTKEEHAKFLEALRKYGKNWNKVFEHVKTRNEQQVRSHAQKYFNKLKQ 223
[Close]
BLAST of NO11G02380 vs. NCBI_GenBank
Match: OQR92021.1 (hypothetical protein ACHHYP_04136 [Achlya hypogyna])

HSP 1 Score: 71.6 bits (174), Expect = 8.300e-9
Identity = 39/96 (40.62%), Postives = 54/96 (56.25%), Query Frame = 0 
Query:  104 DNGHWTDEEHEFFLECWAKYGKSWKKISEVMKTRTNEQVRTHAQKYFAKLNQLRTCGYEG----NYAMDGTRHLTKTFLKKAQRQGRISPGKLKTS 196
            + G WTDEEHE FL+    YG+ WK+++  +KTRT+ Q+R+HAQKYFAKL +    G  G    N           T   +A+ +G  SP + K S
Sbjct:   19 NGGRWTDEEHESFLQGLHLYGREWKRVASKIKTRTSAQIRSHAQKYFAKLAKDAEMGLGGEKPENPVSMSDEDDASTVPSEAETEGETSPSRKKRS 114
[Close]
BLAST of NO11G02380 vs. NCBI_GenBank
Match: OQR95117.1 (hypothetical protein ACHHYP_00385 [Achlya hypogyna])

HSP 1 Score: 71.2 bits (173), Expect = 1.100e-8
Identity = 32/76 (42.11%), Postives = 47/76 (61.84%), Query Frame = 0 
Query:   98 EDPEKKDNGHWTDEEHEFFLECWAKYGKSWKKISEVMKTRTNEQVRTHAQKYFAKLNQLRTCGYEGNYAMDGTRHL 174
            E P  K  G W  EEH+ FLE    YGK+WKK+++V+ TR+  Q+RTHAQK+F +++Q R       +   G +H+
Sbjct:   49 ESPSTKRGGRWLAEEHQLFLEGLRAYGKNWKKVAQVVPTRSTVQIRTHAQKFFKRMSQERHLPLSPTHLGKGDQHI 124
[Close]
BLAST of NO11G02380 vs. NCBI_GenBank
Match: CDW85232.1 (myb-like dna-binding shaqkyf class family protein [Stylonychia lemnae])

HSP 1 Score: 70.1 bits (170), Expect = 2.400e-8
Identity = 32/55 (58.18%), Postives = 39/55 (70.91%), Query Frame = 0 
Query:  101 EKKDNGHWTDEEHEFFLECWAKYGKSWKKISEVMKTRTNEQVRTHAQKYFAKLNQ 156
            +K +NG WT EEH  FLE   KYGK+W K+ E + TR  +QVR+HAQKYF KL Q
Sbjct:  169 QKVNNGRWTKEEHAKFLEALRKYGKNWNKVFEHVNTRNEQQVRSHAQKYFNKLKQ 223
[Close]
BLAST of NO11G02380 vs. NCBI_GenBank
Match: XP_009040677.1 (hypothetical protein AURANDRAFT_32281, partial [Aureococcus anophagefferens] >EGB04570.1 hypothetical protein AURANDRAFT_32281, partial [Aureococcus anophagefferens])

HSP 1 Score: 69.7 bits (169), Expect = 3.200e-8
Identity = 30/51 (58.82%), Postives = 41/51 (80.39%), Query Frame = 0 
Query:  105 NGHWTDEEHEFFLECWAKYGKSWKKISEVMKTRTNEQVRTHAQKYFAKLNQ 156
            +G WT+EEH+ FLE   KYG+SW KIS+VM TR+  QVR+HAQK+F ++N+
Sbjct:    3 HGRWTEEEHQQFLELMQKYGRSWTKISQVMLTRSEPQVRSHAQKHFLRVNR 53
[Close]
BLAST of NO11G02380 vs. NCBI_GenBank
Match: XP_008863052.1 (hypothetical protein H310_01647 [Aphanomyces invadans] >ETW09247.1 hypothetical protein H310_01647 [Aphanomyces invadans])

HSP 1 Score: 69.7 bits (169), Expect = 3.200e-8
Identity = 35/75 (46.67%), Postives = 46/75 (61.33%), Query Frame = 0 
Query:  101 EKKDNGHWTDEEHEFFLECWAKYGKSWKKISEVMKTRTNEQVRTHAQKYFAKLNQLRTCGYEGNYAMDGTRHLTK 176
            E +  G WT +EHE FLE   +YGKSWK IS ++ TRT  Q+RTHAQKY  K ++    G +    + G RHL +
Sbjct:  144 EPQTTGRWTKQEHELFLEGLRRYGKSWKSISNLVVTRTLVQIRTHAQKYLQKQSRSSKAGLQ---YLSGPRHLPR 215
[Close]
BLAST of NO11G02380 vs. NCBI_GenBank
Match: XP_015168972.1 (PREDICTED: transcription factor MYB1R1-like [Solanum tuberosum])

HSP 1 Score: 69.3 bits (168), Expect = 4.100e-8
Identity = 46/163 (28.22%), Postives = 74/163 (45.40%), Query Frame = 0 
Query:   31 QWTIDEHENFLEGLKEFGR-SWESISLHLVPTRTTEQVKNYAAHYF--YKQAQEAASGAAKPAHVRIASTEDPE---------------------------------------KKDNGHWTDEEHEFFLECWAKYGKSWKKIS-EVMKTRTNEQVRTHAQKYF 151
            +W+ DEH  FL GL++ G  +W  I+   VP+RT  Q+ ++A  YF   K   + A+ +     +  ++T + E                                       +K  G WT++EHE FL    K G++W ++S E + +RT  Q+ +HAQKYF
Sbjct:   31 RWSEDEHRAFLSGLEKLGSGNWTEIAKQFVPSRTKTQISSHAQKYFAWLKTKNDKAAKSTSTVELSSSTTSEKETLNEEIPLSPMPINYRVPNDFVPHVSNTVNNGDSVDFLSRKQEGKWTEDEHEAFLIGLDKVGRNWTRVSKEFVPSRTPTQITSHAQKYF 193
[Close]
BLAST of NO11G02380 vs. NCBI_GenBank
Match: ETI35440.1 (hypothetical protein F443_18208 [Phytophthora parasitica P1569] >ETK75700.1 hypothetical protein L915_17730 [Phytophthora parasitica] >ETM35582.1 hypothetical protein L914_17537 [Phytophthora parasitica] >ETO64187.1 hypothetical protein F444_18235 [Phytophthora parasitica P1976] >ETP05274.1 hypothetical protein F441_18079 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 68.6 bits (166), Expect = 7.100e-8
Identity = 35/65 (53.85%), Postives = 41/65 (63.08%), Query Frame = 0 
Query:   88 KPAHVRIASTEDPEKKDNGHWTDEEHEFFLECWAKYGKSWKKISEVMKTRTNEQVRTHAQKYFAK 153
            +PA  R A  E P     G WT  EHE FLE   ++GKSWKKIS ++ TRT  Q+RTHAQKY  K
Sbjct:  114 RPALKREAKGEIPPGTQVGRWTKREHELFLEGLQRFGKSWKKISSLVHTRTLVQIRTHAQKYLQK 178
The following BLAST results are available for this feature:
BLAST of NO11G02380 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CBJ27465.12.900e-948.57conserved unknown protein [Ectocarpus siliculosus][more]
GAX28359.12.900e-937.39protein MYSM1 [Fistulifera solaris][more]
CDW79668.16.400e-960.00myb-like dna-binding shaqkyf class family protein ... [more]
OQR92021.18.300e-940.63hypothetical protein ACHHYP_04136 [Achlya hypogyna... [more]
OQR95117.11.100e-842.11hypothetical protein ACHHYP_00385 [Achlya hypogyna... [more]
CDW85232.12.400e-858.18myb-like dna-binding shaqkyf class family protein ... [more]
XP_009040677.13.200e-858.82hypothetical protein AURANDRAFT_32281, partial [Au... [more]
XP_008863052.13.200e-846.67hypothetical protein H310_01647 [Aphanomyces invad... [more]
XP_015168972.14.100e-828.22PREDICTED: transcription factor MYB1R1-like [Solan... [more]
ETI35440.17.100e-853.85hypothetical protein F443_18208 [Phytophthora para... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002017NSK002017Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G02380.1NO11G02380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|630819gene_5133Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100186g9gene5519Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G02380.1NO11G02380.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G02380 ID=NO11G02380|Name=NO11G02380|organism=Nannochloropsis oceanica|type=gene|length=2382bp
CAGCATGGCAAGGCAGGCAGGGGGCGTGCTGTGCTTTGGCGCATTACTGT
CCTTCGTTTCGCCCTTCATTTAGCCTGCCCCCATTCGTAACCTAAGCCGA
AGCCCCCACCATTATATGTGTTCACACATTTAAATGTGCCATTCGTACTT
CTATCCCTTATTTCCACTCCCCGGCCCAACACAGAACCTCCTTCCCGTTT
GTGCACCCTTCCATCCGGTCCACCATGACTATCCCGTGCACCCCCTTCAC
TGCCAGCGCATACACATCCACCTCTTCCAACGCTGCCAGCGGCCTGCCCC
CTTTCAACCAGATCCAGTGGACCATCGATGAGCATGAAAATTTTCTGGAG
GGCCTCAAGGAGTTTGGCCGCTCCTGGGAGTCTATCTCTCTGCACCTCGT
CCCCACCCGTACCACAGAGCAAGTCAAGAACTACGCCGCGCACTACTTCT
ACAAGCAAGCCCAGGAAGCCGCATCGGGCGCTGCGAAACCTGCCCATGTT
CGTATTGCTTCTACAGAAGATCCTGAAAAGAAGGACAATGGGCATTGGAC
GGACGAGGAGCACGAGTTTTTCTTGGAATGCTGGGCCAAGTACGGCAAGT
CCTGGAAGAAAATCTCGGAAGTGATGAAGACCCGCACCAACGAACAGGTT
AGGACGCACGCCCAGAAGTATTTTGCCAAGCTTAATCAGCTCCGTACCTG
TGGATACGAAGGCAACTATGCCATGGACGGTACGCGGCATTTGACAAAGA
CGTTTTTAAAGAAAGCCCAGAGGCAAGGTCGCATCTCGCCGGGCAAACTG
AAAACCAGTTTCAAGATGACCAGCTCTCGCAGCGTGGTGAAGAAGCGAGG
TAACCGCCAAGGGAAGGCTTTGGCTCGTCTTCAAGGCGGGAGCTCAACTC
TGCGTCGGGTCGCGTCCCAGGCAGGGGAGGGTTTGGGGCAGGATCAGGCT
GAGGCAGAGAAAGAGGGGGAGGAGAAGGATGGGAGCTTGCTGCAGCTCGC
CATCACCAGCTACACCACTCGCAGCGGCCGTGTGGTCACCTGGGCCCAGC
CATTGCAGCACACCCTGACGCAAGCTCAAGCTACCGCGGCCATGATAGGG
GACAAGGCCGAGGGCCGCACAATACAGGAGGGCGAGGACGACAGCAAGCT
AAAGGCAGCCCCGATGGTGATTGCGGCTCCGGTGGGACTGACGATGGACA
CGAGCGCCAGTCAGGAAGGAGAGGGAGAGGAGGTTATGAACGTTTTCGAT
CACAATTATGCGGAAGATCAGCACGATGCCAAGCAGGAGGAGCAGAGCGA
GCGCGTCAAGAAGGTGGCGGAGATAGACTCCGCCGCAGAGGTGGTAGCTG
TGGCATCGACCTTACCTACCCCGGGCACGGTTGCCGACATTATGACCTCT
CTTACCGTGGACTCCCTTGGCTTCCTGCATTGGGATGAGGCTGGTTCCGT
GTCTGAAGGATGGACAGTACTGCCAAAGGTGGCGGATGAGCGTAACGATA
TGAGCTCGCTCTCTGCTGCCACAATAGCCACGCACGGCCCGGCGGAATTG
ATGAGCAGCACTAGCAGCAGCGGTAGCACGGTGAGCAGCAGCAGTAGCAG
CAGCAGCAGATCCGAAGGAGCGACGCAGCGAGACTCAATGCTCTTGATGA
TGAGCAGCGCTGATGGCAGCCTTTTGTGGGAGTCGGACGGGTATAACGCA
GAGGAGGACGACAACAACAGCCTGACACGCCCGCCTACGTCACCCGCTGC
GGCTACCGCGCCCTGGGCGGCCGAAGAAGATGATTTTTGGAAGGAAGCGG
ATGAGGAAAAGGAAGAGGGGGAAGCAACAGCCAGCAAAGATGGTGCGGCG
GTGTTTCAGATTTGATTGAACCCTATAGAAGGAAAGAGACTATGGAGTAA
GGGTAAGCATTTGACTGTTGGGTATGATGGAGAAAGTAGACATGGCAAGG
AACGGATTTGGAGAGAAGTCCTCAATATTTCGTGTGCAATATAAGAAACA
AGGAGAGGGTAAGCGGTAATTGGCATCTGTCCTAGCTTGTAAAAACGACA
TTTTGTGTAAAGCATTTACCGAAACATTAGGCGGCAGCAGTAGCATGGCA
GCGAGGAAGGTCTCAGGGAGGAAAACGAAGTTGCTGGCATTTATTTCACG
TACAGCTACTCAACTTGTTTGCTTTGTAGACACAAATTGCAGATTAGAAC
ACCTCTGCAAAGGAACAGCTTATAATTAGAAGAGCAGGAAAAGATTCATG
AAGAGAGAAGACAACATGACTTAGATTTACCTGACCGCGCAAACGATGAT
ATTCAGAATGTAAAAATGCGGCTTGTATTTTTGGTGACTGCATGGCCGTG
GCATGAACTCGAGCAAGATAGGGAAATAAGTT
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protein sequence of NO11G02380.1

>NO11G02380.1-protein ID=NO11G02380.1-protein|Name=NO11G02380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=547bp
MTIPCTPFTASAYTSTSSNAASGLPPFNQIQWTIDEHENFLEGLKEFGRS
WESISLHLVPTRTTEQVKNYAAHYFYKQAQEAASGAAKPAHVRIASTEDP
EKKDNGHWTDEEHEFFLECWAKYGKSWKKISEVMKTRTNEQVRTHAQKYF
AKLNQLRTCGYEGNYAMDGTRHLTKTFLKKAQRQGRISPGKLKTSFKMTS
SRSVVKKRGNRQGKALARLQGGSSTLRRVASQAGEGLGQDQAEAEKEGEE
KDGSLLQLAITSYTTRSGRVVTWAQPLQHTLTQAQATAAMIGDKAEGRTI
QEGEDDSKLKAAPMVIAAPVGLTMDTSASQEGEGEEVMNVFDHNYAEDQH
DAKQEEQSERVKKVAEIDSAAEVVAVASTLPTPGTVADIMTSLTVDSLGF
LHWDEAGSVSEGWTVLPKVADERNDMSSLSAATIATHGPAELMSSTSSSG
STVSSSSSSSSRSEGATQRDSMLLMMSSADGSLLWESDGYNAEEDDNNSL
TRPPTSPAAATAPWAAEEDDFWKEADEEKEEGEATASKDGAAVFQI*
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Synonyms
Publications