NO11G02380.1, NO11G02380.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G02380.1
Unique NameNO11G02380.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2382
Alignment locationchr11:759330..761711 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:759330..761711 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO11G02380.1 vs.
Match: EWM24966.1 (SANT/Myb domain protein [Nannochloropsis gaditana])

HSP 1 Score: 337.0 bits (863), Expect = 1.100e-88
Identity = 220/515 (42.72%), Postives = 304/515 (59.03%), Query Frame = 0 
Query:   26 PFNQIQWTIDEHENFLEGLKEFGRSWESISLHLVPTRTTEQVKNYAAHYFYKQAQEAASGAAKPAHVRIASTEDPE-----KKDNGHWTDEEHEFFLECWAKYGKSWKKISEVMKTRTNEQVRTHAQKYFAKLNQLRTCGYEGNYAMDGTRHLTKTFLKKAQRQGRISPGKLKTSFKMTSSRSVVKKRGNRQGKALARLQGGSST---------LRRVASQAGEGLGQDQAEAEKEGEEK-----DGSLLQLAITSYTTRSGRVVTWAQPLQH---TLTQAQATAAMIGDKAEGRTIQEGEDDSKLKAAPMVIAAPVGLTMDTSASQEGEGEEVMNVFDHNYAEDQHDAKQEEQSERVKKVAEIDSAAEVVAVASTLPTPGTVADIMTSLTVDSLGFLHWDEAGSVSEG-----WTVLPKVADERNDMSSLSAATIATHGPAELMSSTSSSGSTVSSSSSSSSRSEGA-TQRDSMLLMMSSADGSLLWESDGYNAEEDDNNSLTRPPTSPAAATA 513
            P     WT +EH  FLEGLK++GRSWESIS  L+PTRT E++KNYA+ Y   Q ++           R AST+  +     +   GHWTDEEHEFFL+CWAKYGKSWKKIS+VMKTR+NEQ+RTHAQKYF KL+QLRTCGYEG+Y MDGTRHLTKTFLKKAQ +GR+  G  ++ FK+ + R V K+  NR+ K LAR++G S                 + GE  G D  E E+ G E+     D + +   +++YTTRSGRVVT+++P QH   T ++A+         A+G  + E    +  ++A +V +   G+T+DT       G  ++   D      +H A +E   E  + V+          V++++PTP T+ D++++ T+D  GF  W+ +G   +G     WT    V+         S+      G A L SS SS+ ++ +S+ S SS ++G  TQRD M++MM SAD SL WES+ YN E+DD+NSLTRPP SP A  A
Sbjct:   77 PIASSDWTTEEHARFLEGLKQYGRSWESISTLLLPTRTPEEIKNYASLYLVNQPKDLTPP-------RTASTKGKDGASAARAKEGHWTDEEHEFFLKCWAKYGKSWKKISQVMKTRSNEQIRTHAQKYFTKLDQLRTCGYEGSYTMDGTRHLTKTFLKKAQCEGRLESGSWRSRFKLKNPRGVAKRHANRRKKVLARIRGSSGRSPYGHRHWRYGDHVGEEGEEEGDDVEEDEESGSERLEGGHDATSVCGTLSTYTTRSGRVVTFSRPSQHVQDTNSEAEENEER-SHTADGIYVGEMPTYTHDESALLVES---GMTIDTGVHTGRLGMAIVRDDDVK----EHHAPKEGYEELSRDVS---------GVSASIPTPRTMVDVLSAFTMDPEGFPQWEYSGRREQGASLHPWTENDTVSARSGSDVFESSTKCVPQGYAALTSSVSSAATSAASNFSDSSCADGLKTQRDDMVMMMCSADDSLFWESESYNEEQDDDNSLTRPPVSPNADAA 567
The following BLAST results are available for this feature:
BLAST of NO11G02380.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24966.11.100e-8842.72SANT/Myb domain protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G02380NO11G02380Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G02380.1NO11G02380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G02380.1.cds1NO11G02380.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G02380.1 ID=NO11G02380.1|Name=NO11G02380.1|organism=Nannochloropsis oceanica|type=mRNA|length=2382bp
CAGCATGGCAAGGCAGGCAGGGGGCGTGCTGTGCTTTGGCGCATTACTGT
CCTTCGTTTCGCCCTTCATTTAGCCTGCCCCCATTCGTAACCTAAGCCGA
AGCCCCCACCATTATATGTGTTCACACATTTAAATGTGCCATTCGTACTT
CTATCCCTTATTTCCACTCCCCGGCCCAACACAGAACCTCCTTCCCGTTT
GTGCACCCTTCCATCCGGTCCACCATGACTATCCCGTGCACCCCCTTCAC
TGCCAGCGCATACACATCCACCTCTTCCAACGCTGCCAGCGGCCTGCCCC
CTTTCAACCAGATCCAGTGGACCATCGATGAGCATGAAAATTTTCTGGAG
GGCCTCAAGGAGTTTGGCCGCTCCTGGGAGTCTATCTCTCTGCACCTCGT
CCCCACCCGTACCACAGAGCAAGTCAAGAACTACGCCGCGCACTACTTCT
ACAAGCAAGCCCAGGAAGCCGCATCGGGCGCTGCGAAACCTGCCCATGTT
CGTATTGCTTCTACAGAAGATCCTGAAAAGAAGGACAATGGGCATTGGAC
GGACGAGGAGCACGAGTTTTTCTTGGAATGCTGGGCCAAGTACGGCAAGT
CCTGGAAGAAAATCTCGGAAGTGATGAAGACCCGCACCAACGAACAGGTT
AGGACGCACGCCCAGAAGTATTTTGCCAAGCTTAATCAGCTCCGTACCTG
TGGATACGAAGGCAACTATGCCATGGACGGTACGCGGCATTTGACAAAGA
CGTTTTTAAAGAAAGCCCAGAGGCAAGGTCGCATCTCGCCGGGCAAACTG
AAAACCAGTTTCAAGATGACCAGCTCTCGCAGCGTGGTGAAGAAGCGAGG
TAACCGCCAAGGGAAGGCTTTGGCTCGTCTTCAAGGCGGGAGCTCAACTC
TGCGTCGGGTCGCGTCCCAGGCAGGGGAGGGTTTGGGGCAGGATCAGGCT
GAGGCAGAGAAAGAGGGGGAGGAGAAGGATGGGAGCTTGCTGCAGCTCGC
CATCACCAGCTACACCACTCGCAGCGGCCGTGTGGTCACCTGGGCCCAGC
CATTGCAGCACACCCTGACGCAAGCTCAAGCTACCGCGGCCATGATAGGG
GACAAGGCCGAGGGCCGCACAATACAGGAGGGCGAGGACGACAGCAAGCT
AAAGGCAGCCCCGATGGTGATTGCGGCTCCGGTGGGACTGACGATGGACA
CGAGCGCCAGTCAGGAAGGAGAGGGAGAGGAGGTTATGAACGTTTTCGAT
CACAATTATGCGGAAGATCAGCACGATGCCAAGCAGGAGGAGCAGAGCGA
GCGCGTCAAGAAGGTGGCGGAGATAGACTCCGCCGCAGAGGTGGTAGCTG
TGGCATCGACCTTACCTACCCCGGGCACGGTTGCCGACATTATGACCTCT
CTTACCGTGGACTCCCTTGGCTTCCTGCATTGGGATGAGGCTGGTTCCGT
GTCTGAAGGATGGACAGTACTGCCAAAGGTGGCGGATGAGCGTAACGATA
TGAGCTCGCTCTCTGCTGCCACAATAGCCACGCACGGCCCGGCGGAATTG
ATGAGCAGCACTAGCAGCAGCGGTAGCACGGTGAGCAGCAGCAGTAGCAG
CAGCAGCAGATCCGAAGGAGCGACGCAGCGAGACTCAATGCTCTTGATGA
TGAGCAGCGCTGATGGCAGCCTTTTGTGGGAGTCGGACGGGTATAACGCA
GAGGAGGACGACAACAACAGCCTGACACGCCCGCCTACGTCACCCGCTGC
GGCTACCGCGCCCTGGGCGGCCGAAGAAGATGATTTTTGGAAGGAAGCGG
ATGAGGAAAAGGAAGAGGGGGAAGCAACAGCCAGCAAAGATGGTGCGGCG
GTGTTTCAGATTTGATTGAACCCTATAGAAGGAAAGAGACTATGGAGTAA
GGGTAAGCATTTGACTGTTGGGTATGATGGAGAAAGTAGACATGGCAAGG
AACGGATTTGGAGAGAAGTCCTCAATATTTCGTGTGCAATATAAGAAACA
AGGAGAGGGTAAGCGGTAATTGGCATCTGTCCTAGCTTGTAAAAACGACA
TTTTGTGTAAAGCATTTACCGAAACATTAGGCGGCAGCAGTAGCATGGCA
GCGAGGAAGGTCTCAGGGAGGAAAACGAAGTTGCTGGCATTTATTTCACG
TACAGCTACTCAACTTGTTTGCTTTGTAGACACAAATTGCAGATTAGAAC
ACCTCTGCAAAGGAACAGCTTATAATTAGAAGAGCAGGAAAAGATTCATG
AAGAGAGAAGACAACATGACTTAGATTTACCTGACCGCGCAAACGATGAT
ATTCAGAATGTAAAAATGCGGCTTGTATTTTTGGTGACTGCATGGCCGTG
GCATGAACTCGAGCAAGATAGGGAAATAAGTT
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protein sequence of NO11G02380.1

>NO11G02380.1-protein ID=NO11G02380.1-protein|Name=NO11G02380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=547bp
MTIPCTPFTASAYTSTSSNAASGLPPFNQIQWTIDEHENFLEGLKEFGRS
WESISLHLVPTRTTEQVKNYAAHYFYKQAQEAASGAAKPAHVRIASTEDP
EKKDNGHWTDEEHEFFLECWAKYGKSWKKISEVMKTRTNEQVRTHAQKYF
AKLNQLRTCGYEGNYAMDGTRHLTKTFLKKAQRQGRISPGKLKTSFKMTS
SRSVVKKRGNRQGKALARLQGGSSTLRRVASQAGEGLGQDQAEAEKEGEE
KDGSLLQLAITSYTTRSGRVVTWAQPLQHTLTQAQATAAMIGDKAEGRTI
QEGEDDSKLKAAPMVIAAPVGLTMDTSASQEGEGEEVMNVFDHNYAEDQH
DAKQEEQSERVKKVAEIDSAAEVVAVASTLPTPGTVADIMTSLTVDSLGF
LHWDEAGSVSEGWTVLPKVADERNDMSSLSAATIATHGPAELMSSTSSSG
STVSSSSSSSSRSEGATQRDSMLLMMSSADGSLLWESDGYNAEEDDNNSL
TRPPTSPAAATAPWAAEEDDFWKEADEEKEEGEATASKDGAAVFQI*
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mRNA from alignment at chr11:759330..761711+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G02380.1 ID=NO11G02380.1|Name=NO11G02380.1|organism=Nannochloropsis oceanica|type=mRNA|length=2382bp|location=Sequence derived from alignment at chr11:759330..761711+ (Nannochloropsis oceanica)
CAGCATGGCAAGGCAGGCAGGGGGCGTGCTGTGCTTTGGCGCATTACTGT
CCTTCGTTTCGCCCTTCATTTAGCCTGCCCCCATTCGTAACCTAAGCCGA
AGCCCCCACCATTATATGTGTTCACACATTTAAATGTGCCATTCGTACTT
CTATCCCTTATTTCCACTCCCCGGCCCAACACAGAACCTCCTTCCCGTTT
GTGCACCCTTCCATCCGGTCCACCATGACTATCCCGTGCACCCCCTTCAC
TGCCAGCGCATACACATCCACCTCTTCCAACGCTGCCAGCGGCCTGCCCC
CTTTCAACCAGATCCAGTGGACCATCGATGAGCATGAAAATTTTCTGGAG
GGCCTCAAGGAGTTTGGCCGCTCCTGGGAGTCTATCTCTCTGCACCTCGT
CCCCACCCGTACCACAGAGCAAGTCAAGAACTACGCCGCGCACTACTTCT
ACAAGCAAGCCCAGGAAGCCGCATCGGGCGCTGCGAAACCTGCCCATGTT
CGTATTGCTTCTACAGAAGATCCTGAAAAGAAGGACAATGGGCATTGGAC
GGACGAGGAGCACGAGTTTTTCTTGGAATGCTGGGCCAAGTACGGCAAGT
CCTGGAAGAAAATCTCGGAAGTGATGAAGACCCGCACCAACGAACAGGTT
AGGACGCACGCCCAGAAGTATTTTGCCAAGCTTAATCAGCTCCGTACCTG
TGGATACGAAGGCAACTATGCCATGGACGGTACGCGGCATTTGACAAAGA
CGTTTTTAAAGAAAGCCCAGAGGCAAGGTCGCATCTCGCCGGGCAAACTG
AAAACCAGTTTCAAGATGACCAGCTCTCGCAGCGTGGTGAAGAAGCGAGG
TAACCGCCAAGGGAAGGCTTTGGCTCGTCTTCAAGGCGGGAGCTCAACTC
TGCGTCGGGTCGCGTCCCAGGCAGGGGAGGGTTTGGGGCAGGATCAGGCT
GAGGCAGAGAAAGAGGGGGAGGAGAAGGATGGGAGCTTGCTGCAGCTCGC
CATCACCAGCTACACCACTCGCAGCGGCCGTGTGGTCACCTGGGCCCAGC
CATTGCAGCACACCCTGACGCAAGCTCAAGCTACCGCGGCCATGATAGGG
GACAAGGCCGAGGGCCGCACAATACAGGAGGGCGAGGACGACAGCAAGCT
AAAGGCAGCCCCGATGGTGATTGCGGCTCCGGTGGGACTGACGATGGACA
CGAGCGCCAGTCAGGAAGGAGAGGGAGAGGAGGTTATGAACGTTTTCGAT
CACAATTATGCGGAAGATCAGCACGATGCCAAGCAGGAGGAGCAGAGCGA
GCGCGTCAAGAAGGTGGCGGAGATAGACTCCGCCGCAGAGGTGGTAGCTG
TGGCATCGACCTTACCTACCCCGGGCACGGTTGCCGACATTATGACCTCT
CTTACCGTGGACTCCCTTGGCTTCCTGCATTGGGATGAGGCTGGTTCCGT
GTCTGAAGGATGGACAGTACTGCCAAAGGTGGCGGATGAGCGTAACGATA
TGAGCTCGCTCTCTGCTGCCACAATAGCCACGCACGGCCCGGCGGAATTG
ATGAGCAGCACTAGCAGCAGCGGTAGCACGGTGAGCAGCAGCAGTAGCAG
CAGCAGCAGATCCGAAGGAGCGACGCAGCGAGACTCAATGCTCTTGATGA
TGAGCAGCGCTGATGGCAGCCTTTTGTGGGAGTCGGACGGGTATAACGCA
GAGGAGGACGACAACAACAGCCTGACACGCCCGCCTACGTCACCCGCTGC
GGCTACCGCGCCCTGGGCGGCCGAAGAAGATGATTTTTGGAAGGAAGCGG
ATGAGGAAAAGGAAGAGGGGGAAGCAACAGCCAGCAAAGATGGTGCGGCG
GTGTTTCAGATTTGATTGAACCCTATAGAAGGAAAGAGACTATGGAGTAA
GGGTAAGCATTTGACTGTTGGGTATGATGGAGAAAGTAGACATGGCAAGG
AACGGATTTGGAGAGAAGTCCTCAATATTTCGTGTGCAATATAAGAAACA
AGGAGAGGGTAAGCGGTAATTGGCATCTGTCCTAGCTTGTAAAAACGACA
TTTTGTGTAAAGCATTTACCGAAACATTAGGCGGCAGCAGTAGCATGGCA
GCGAGGAAGGTCTCAGGGAGGAAAACGAAGTTGCTGGCATTTATTTCACG
TACAGCTACTCAACTTGTTTGCTTTGTAGACACAAATTGCAGATTAGAAC
ACCTCTGCAAAGGAACAGCTTATAATTAGAAGAGCAGGAAAAGATTCATG
AAGAGAGAAGACAACATGACTTAGATTTACCTGACCGCGCAAACGATGAT
ATTCAGAATGTAAAAATGCGGCTTGTATTTTTGGTGACTGCATGGCCGTG
GCATGAACTCGAGCAAGATAGGGAAATAAGTT
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Coding sequence (CDS) from alignment at chr11:759330..761711+

>NO11G02380.1 ID=NO11G02380.1|Name=NO11G02380.1|organism=Nannochloropsis oceanica|type=CDS|length=1641bp|location=Sequence derived from alignment at chr11:759330..761711+ (Nannochloropsis oceanica)
ATGACTATCCCGTGCACCCCCTTCACTGCCAGCGCATACACATCCACCTC
TTCCAACGCTGCCAGCGGCCTGCCCCCTTTCAACCAGATCCAGTGGACCA
TCGATGAGCATGAAAATTTTCTGGAGGGCCTCAAGGAGTTTGGCCGCTCC
TGGGAGTCTATCTCTCTGCACCTCGTCCCCACCCGTACCACAGAGCAAGT
CAAGAACTACGCCGCGCACTACTTCTACAAGCAAGCCCAGGAAGCCGCAT
CGGGCGCTGCGAAACCTGCCCATGTTCGTATTGCTTCTACAGAAGATCCT
GAAAAGAAGGACAATGGGCATTGGACGGACGAGGAGCACGAGTTTTTCTT
GGAATGCTGGGCCAAGTACGGCAAGTCCTGGAAGAAAATCTCGGAAGTGA
TGAAGACCCGCACCAACGAACAGGTTAGGACGCACGCCCAGAAGTATTTT
GCCAAGCTTAATCAGCTCCGTACCTGTGGATACGAAGGCAACTATGCCAT
GGACGGTACGCGGCATTTGACAAAGACGTTTTTAAAGAAAGCCCAGAGGC
AAGGTCGCATCTCGCCGGGCAAACTGAAAACCAGTTTCAAGATGACCAGC
TCTCGCAGCGTGGTGAAGAAGCGAGGTAACCGCCAAGGGAAGGCTTTGGC
TCGTCTTCAAGGCGGGAGCTCAACTCTGCGTCGGGTCGCGTCCCAGGCAG
GGGAGGGTTTGGGGCAGGATCAGGCTGAGGCAGAGAAAGAGGGGGAGGAG
AAGGATGGGAGCTTGCTGCAGCTCGCCATCACCAGCTACACCACTCGCAG
CGGCCGTGTGGTCACCTGGGCCCAGCCATTGCAGCACACCCTGACGCAAG
CTCAAGCTACCGCGGCCATGATAGGGGACAAGGCCGAGGGCCGCACAATA
CAGGAGGGCGAGGACGACAGCAAGCTAAAGGCAGCCCCGATGGTGATTGC
GGCTCCGGTGGGACTGACGATGGACACGAGCGCCAGTCAGGAAGGAGAGG
GAGAGGAGGTTATGAACGTTTTCGATCACAATTATGCGGAAGATCAGCAC
GATGCCAAGCAGGAGGAGCAGAGCGAGCGCGTCAAGAAGGTGGCGGAGAT
AGACTCCGCCGCAGAGGTGGTAGCTGTGGCATCGACCTTACCTACCCCGG
GCACGGTTGCCGACATTATGACCTCTCTTACCGTGGACTCCCTTGGCTTC
CTGCATTGGGATGAGGCTGGTTCCGTGTCTGAAGGATGGACAGTACTGCC
AAAGGTGGCGGATGAGCGTAACGATATGAGCTCGCTCTCTGCTGCCACAA
TAGCCACGCACGGCCCGGCGGAATTGATGAGCAGCACTAGCAGCAGCGGT
AGCACGGTGAGCAGCAGCAGTAGCAGCAGCAGCAGATCCGAAGGAGCGAC
GCAGCGAGACTCAATGCTCTTGATGATGAGCAGCGCTGATGGCAGCCTTT
TGTGGGAGTCGGACGGGTATAACGCAGAGGAGGACGACAACAACAGCCTG
ACACGCCCGCCTACGTCACCCGCTGCGGCTACCGCGCCCTGGGCGGCCGA
AGAAGATGATTTTTGGAAGGAAGCGGATGAGGAAAAGGAAGAGGGGGAAG
CAACAGCCAGCAAAGATGGTGCGGCGGTGTTTCAGATTTGA
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Synonyms
Publications