NO11G02040, NO11G02040 (gene) Nannochloropsis oceanica

Overview
NameNO11G02040
Unique NameNO11G02040
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length5700
Alignment locationchr11:653121..658820 -

Link to JBrowse

Properties
Property NameValue
DescriptionTranscription factor mtf-1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:653121..658820 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003676nucleic acid binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR016024ARM-type_fold
IPR036236Znf_C2H2_sf
IPR013087Znf_C2H2/integrase_DNA-bd
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO11G02040 vs. NCBI_GenBank
Match: EWM25008.1 (transcription factor mtf-1 [Nannochloropsis gaditana])

HSP 1 Score: 195.3 bits (495), Expect = 5.700e-46
Identity = 286/577 (49.57%), Postives = 315/577 (54.59%), Query Frame = 0 
Query:   48 PVHVFSFTSTTMDVVSTSTKGSQLPRRYKCKYEGCGKAFTKSSNLVQHVRIHTGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSHLRWKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHLSLSGNNHGMPIGITTPTRTGTAQDSLFSTPAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSATRHTCNHPGCGAIFTSAYALKHHALIACSTLMDDHEHLRRLVNESVQLLALHVGARASPAVASFIDRVRDTNSKHVAGARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLMHLPAGNSNQGVGVIKADMTDDMGVGFSFTMTPHGTLTGSSRFNGFENADGGREGGLLTPSANNLMSPGLAFDFPLSATEAATEGGMMGPQSVAIFSPSQGTFVF 625
            P   +   ST   +  TS+KGSQLPRRYKCKYEGCGKAFTKSSNLVQHVRIHTGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSHLRWKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  +   G        + TPTR    Q    +   G                                                               S     C+H GC A+F SA+AL HH L++C  LM DHEH+RRL+ E+V LL+ H     +PA+A F+ R ++ +S+H         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  XXXXXXXXXXXXXXXXXXXXXXXXX                       +H                                                                                R + L    S   +GVIKADMTDDMGVGFSFTMTPHGTLTGSSRFNGFENAD   +  LLTP AN+LMSP LAFDFP S  EA TEG  M PQ++AIFSPSQG FVF
Sbjct:   52 PSFFYCRLSTFFQMDVTSSKGSQLPRRYKCKYEGCGKAFTKSSNLVQHVRIHTGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSHLRWKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMGEPGTP-----AMGTPTRPSLPQGHHLARTTG----------------GGGMPGSSRVGVTGGQDLHGVAQQHYPRQHQVSSAVTAYHGSHTMPTSRPPVMCHHGGCKAVFPSAHALMHHTLLSCPVLMADHEHIRRLLKEAVHLLSDH--CLNTPAIAHFVQRAQEVDSRH--------RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPREHGQANKQVHHPEHRDGYEGPRH------------------------QHQAHAPRAGAGSHMQWERAGSQQQQLSHKQQHPHRLALPMTVTTPGSYSQPQGIRRELTLQPTGSAPDLGVIKADMTDDMGVGFSFTMTPHGTLTGSSRFNGFENADA--QPSLLTPGANSLMSPSLAFDFPSSTNEATTEG--MPPQALAIFSPSQGAFVF 569
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BLAST of NO11G02040 vs. NCBI_GenBank
Match: XP_005853339.1 (hypothetical protein NGA_0339802, partial [Nannochloropsis gaditana CCMP526] >EKU23022.1 hypothetical protein NGA_0339802, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 145.2 bits (365), Expect = 6.800e-31
Identity = 183/350 (52.29%), Postives = 205/350 (58.57%), Query Frame = 0 
Query:  275 CNHPGCGAIFTSAYALKHHALIACSTLMDDHEHLRRLVNESVQLLALHVGARASPAVASFIDRVRDTNSKHVAGARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLMHLPAGNSNQGVGVIKADMTDDMGVGFSFTMTPHGTLTGSSRFNGFENADGGREGGLLTPSANNLMSPGLAFDFPLSATEAATEGGMMGPQSVAIFSPSQGTFVF 625
            C+H GC A+F SA+AL HH L++C  L+ DHEH+RRL+ E+V LL+ H     +PA+A F+ R ++ +S+H    RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX               H                                                                                 L   P G S   +GVIKADMTDDMGVGFSFTMTPHGTLTGSSRFNGFENAD   +  LLTP AN+LMSP LAFDFP S  EA TEG  M PQ++AIFSPSQG FVF
Sbjct:  134 CHHGGCKAVFPSAHALMHHTLLSCPVLLADHEHIRRLLKEAVHLLSDH--CLNTPAIAHFVQRAQEVDSRH----RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEHRDGYAGPRHQHQAH----------------------------APRAGAGSHMQWERAGSQQQQLSHKQQHPHRLALPLTVTTPGSYSQPQGTRTELTLHPTG-SAPDLGVIKADMTDDMGVGFSFTMTPHGTLTGSSRFNGFENADA--QPSLLTPGANSLMSPSLAFDFPSSTNEATTEG--MPPQALAIFSPSQGAFVF 444
The following BLAST results are available for this feature:
BLAST of NO11G02040 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM25008.15.700e-4649.57transcription factor mtf-1 [Nannochloropsis gadita... [more]
XP_005853339.16.800e-3152.29hypothetical protein NGA_0339802, partial [Nannoch... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G02040.1NO11G02040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|53665gene_5095Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G02040.1NO11G02040.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G02040 ID=NO11G02040|Name=NO11G02040|organism=Nannochloropsis oceanica|type=gene|length=5700bp
CCTTTGAGAAGTGCTGTCGTTGACGAGTCGTCCCTCCTCCTGTCCCTGAA
TCTCACCGCACGCAATGGCTCGCATAGAGCTCTAACAGAATTTGGTCCAG
GCTTCACACCGGGATGCAAATGACAGGCTTTCAAACTTGTGTGACCTCCT
GCGTCCCTTCCGTGTGGTAGACATGACGGTTCCCCCAATCCTTTGGCCTC
CCAACAGAGCAAGGATTTAGGCTTTAGGCAAGGCATGATTTTAGAAGGCC
ACTAAACTGAATTTCAGGCACACATCATATGCACACACAATATAAACATC
GTTGCAAGGACGCGGCAGGCGTAGGTTTGGCCACGTTTGTGCATTTTGGT
GCCAGCTTCGTTCGCTTCTTTCCTGCTCTTCCCTGAGAGTGCTGTTCGTG
GGATTCGGCCCATGCGAAGGACTACAAGTCCGTCGACTGAGCAGGTAAAA
TTTCACCGGCCTTGCTCACTCCTGTTCGTCCACATTACTACTACACAGGT
GTCTCCAGAGACTCCTACCTCGAGGGCGTTTGAATCTTGTCCACCTCAAG
GACCCGTCCACGTCTTCTCCTTCACTTCTACTACCATGGATGTTGTCAGC
ACCAGCACCAAGGGTAGCCAACTTCCCCGCCGGTATAAGTGCAAGTACGA
AGGCTGTGGCAAGGCCTTTACCAAGgtaagtacttctcgtagtgatcgga
ggaggtgggtggaggagatagggggacagcatcaaaggaggggggtgaga
gtagggacgttgtaggatgaaagagaccgcttcactttacacaaatgcca
cgctccttcacccagcgctgtatcactactttcactcatctcacgacaag
cccgcgtccaaccccctaaccttgaagctctagtaccatccactcgctca
acccctctccttccctctctccctccccctttcccactcatacagTCCTC
CAATCTCGTCCAACACGTCAGAATTCACACGGGAGAACGCCCCTTCCCAT
GCAAATACCCAGGATGTGGGAAGAACTTCCGTCAGTCCGGTAACTTGACA
AAGCACATGCGTTCTCACGAACACTCCCACCTCCGCTGGAAGCGCAACAC
TAAAGAGAAGCCCTTCCGCTGCACCCACCTCGGATGTGAGAAGTCATTCA
CCGCCAAGAGTTCCCTCAAGATCCACATTGCCCAGCACGCGGATCATTTA
TCCCTCAGCGGCAACAACCATGGCATGCCTATCGGGATAACTACCCCTAC
TCGTACCGGTACTGCTCAAGACTCCCTCTTCTCTACTCCTGCTGGAACTA
CCATCCACCACCATCAACAACAGCAGCGACAATACCACCAGCATAACCAC
CACCACCAGCAGCGTCAGCAGCAACATCAACAGCAGCAGCAACATGAACG
TATCTCCTCCACAATATCTCCCTTTATCAAATCAAGCACCAGCAGCAGCA
GCCCCACCACCACCACTACCACTACTATCATGCCTTCGGCGACCCGCCAC
ACTTGCAACCACCCAGGATGCGGAGCCATTTTCACTTCCGCCTATGCATT
GAAGCATCATGCCCTGATCGCCTGCTCGACCCTCATGGACGATCATGAGC
ACCTGCGTCGTCTCGTCAATGAGTCAGTGCAGCTCCTCGCCCTGCACGTC
GGGGCCCGCGCTTCGCCCGCTGTGGCAAGCTTTATTGATCGCGTCCGAGA
CACCAATTCGAAGCACGTGGCTGGTGCAAGGCAGATGCAGCAGGAGCAAC
AGTTGTTGCGACAACAACAACAACAACAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAACAGCAGGTGGGAGGAGGAGCGATTCTGCCGGAGGAGGACGA
AGAGGAGGACGAGGACGAGGAGGAAGACGAGGACGAGGACGAGGATGAGG
ATGAGGAGGAGGTAGAGGGAGAGGAGGGGGAGGACCAGCCTCAGCAGCAG
CAGCGGCAGCCACAAGGCCATCGTCACCAGCATGCGAAGCATCAGCAGCG
TCTCTCGTCCTCCTCCCACCAGAGCAGTATCTTACAAGAGCAGCAGCAAC
AACAGCAGCACGCGCAGCAGCCGCCCCACACTCGCAGTGGTCAGAATAGC
ATGGACTGGGAGCAAGCCGCGGTCCACCAACAGCACCAGCAGCAGCTCCT
TCTTCCCATGACCTCCCTCCCCGCCCACACACACCCTAGCAGCAGCAGCG
ACAGCAACACCATGCCTCCGAAAAAGAAGGAACGCCTGATGCATCTACCT
GCAGGGAATAGCAACCAGGGCGTCGGAGTGATCAAGGCAGATATGACTGA
TGATATGGGTGTAGGGTTCTCTTTCACAATGACTCCTCACGGGACATTGA
CGGGCTCTAGCCGTTTCAATGGGTTTGAGAACGCCGATGGAGGGAGGGAA
GGAGGGCTGTTGACACCTAGCGCAAACAATTTGATGTCCCCGGGTCTGGC
TTTTGATTTCCCTCTTTCCGCCACCGAGGCAGCGACGGAGGGAGGGATGA
TGGGGCCCCAGTCGGTGGCGATTTTCTCACCTAGCCAGGGGACATTTGTG
TTTACATAAGTTTGTGTTGAAAGAGGATTAATGGTGTTTGTGAAACCGTT
TTAAAAGGGTGGATGGTGTTCACAAAGCCGTTGAAGAGGATGGATAGAGG
GAGGTACGGAAAGGAGGAGGGAAATAGAAAGGGCAGGAGGAGGAGGAGGG
AGAATTTGTACGAAGTAAAGTGCGAGAGCGGATAAAGGAGAGAGACACAA
GGAGGAAGAGGGGAAGGGCTGTGTGATAATTACATGTAAGTGAGCAAATG
GAGACATGCATTGGGGGGAATGAATTGGAAACGTACATAGTGATAAAACA
AGGACAGCACAAGCACACACTACTACTGTCGGCTCGAACTGACTTGCAAC
GGAAGGGAGGAACTCTTTCACGAAGACTTTTGCAAAGCGCGCCGCCCAGC
ATGTTAACATACGTACGTCGTAGAAAGAGATATCTTGGGGGCGGGGAAAA
GCTATTGTATCGCACACGTTTCGTTGTTTATGTTTGTTCTGGACTGAAGG
CAAAGGGTTTGCCGGCTTTCTGGATATTTTTATCGGAAGGGGGAAAAGGA
GTGGATAAAAAGAGAAGACGGAGAAAGATAGATAGACATAAGAGAGGAGG
GAGAGAGACAGAGAGAGATATTCGTCGAGGGTTGTGAAAATATTCATTTT
AGTGTGGAGGATCGGGGAAGCTGGAAGGTAAAGCACGGGCCTGGCTTTTC
ATGGGGCGGGGACAAAAAAGGATTGTACATCATTATCAACGCGAGGAAAA
AAATTTAAACTTAGCGAAAGGAGAATACGACGAGAGGAGAAAATGGAAGA
GGTAATTGAGTTTTCAAAGTCATCCATCCACCCACCGTAAGCCTACACGC
ACACGCACCAACAACTACACATACCTCCTCCACATACACACCTGCCAAGG
CAAGGAGAATTATAATACCGAGGGGACCGCATCTCGATAGACGACAAAGC
AATGCTACAGACAAGACATGCTGAAATAGCAGCAGCAGCACGTCTGTCTA
CAACAACGAAAAAGAACCAAAATATGGTGTGTAGAAAGCTTGAAAACATT
TCAACCTCTCCGCCAGTGCCAGTCAATGTCCAGCTACCTCGATACAGTGT
GATTGTTGTTGATACACTTGCGCGCTGTTGGATCTTTTGCTTGTTTCTCT
TGCCGTTCATCTCTTCGTTTGGTTTCTGTCTTCGCTCGCCGCCGAGTTGA
ACATTTCGCTGTCTCTCTCCATCCTACACACGCAGTTTATACACCCTTGG
TTTCATCTATCTCTAATCTTTCCCTCTATGTGCATCTCACCCTCCCGCTG
TCTTCTTTTTACATGCAAGCCCGCACACCCGCCTTGGGGAACACATAAAA
TCCATAGCTCTGCTTCGGCAGCACCAAGTCCTCGCCCTTCTTCACCACCA
AGGGGTCCATGGCGGGATATACTCCCTCCGACGACACCTGAAGCGGGCTG
CCATTCAAAAGGGAAAAGGTTCCGTTGAGCTTTCCCGGCATGCCTGAGGT
CAAGGTATATTCCAAGCGGGGTTCTGGCAACAGATCCCTCCACTCTCCCT
CCAGCTTCAAGACGCCAATCTGCGCGTCATGTTGAGCCATGAAATTAATT
ATCAAAACAGTAACCGCCCCAGGCTCCAACCCTTGCAGCTCGTCCTCCTT
CCCTCCCTTCCTCGTACAATGCGCATACACCGTCACCTCTGGACTACTGC
TCTCTACTCTCAGCACCTCCCGCCCCATCAGCCGTTTAAACAACAGATAG
TTGAAAAAGTCCGGATTCGGCAGCAAAGTATCCTTGTCAAGCAATCCGTA
ATTCCCTCCCAAAAGCGTCTGGCGACAATAAACGGTGAAACCATTTTTCG
CGAAAATCCCCAGCTCATTCAAGGACCAAAATCCGGCCGTAAATCGATTG
GTCGTCCCGTTTTGCCCTGAATTATACGCTCCCCCATCCTCACCCATCCA
CAACTGAGGCATCTTTACCACACCCCCAACATTTTTCGCAACCAACCCTT
GCATGAGCTGCGTGAGGTCTTCGGCAGTCCGGGTGGCTTTGGCCATATGT
GAGGGGTTTATGATTTTTCCAGCCAAGGTAGGGTCAACACCAGCTCCCAA
AGCATACATGTGTATTGCCACCCCATCCAAACTCCCCTGTGCTGCCTCAA
AAAACTCAGTAAACCATGTGATGTCCAAGTCCGTATCAGGACCCACCACC
AAAGGCGCCTCCTCCCCTTCCCCCCAGAGTTCCGTGACCATTCCTCTTAA
CGTCACAAAATCCTGTCCTACATCTCGCGCAGATAGTTGAGCCTGGATGC
CATTGAAACCCCCAAGTTCATTTCCGAGCTCCCAAGCATAGATGGGGAGT
CCTGCTTCTTTCGTGTAAGTCATCAGCGACTTGGCATTGCTTTGGTCCCA
CATCCCCTCCCACTGTTTCCCCTCGACATGCACACGGCCCTTCAACCCAT
TCAACCCAAACACCAATTTCGCCTCGTGGTCTTTGGCAAAATTTGCGATT
TCGGACCAGCGGCTCCGATTGAGGCAGCCGCCCGTAAAGCCCCATTTGGC
GGTAGGGTCGTCAGTTATGGGAGGGCAGACTACTGCAGGGTTCCCTGGCT
CTTCGTACGTAATGTCATCCTGCAAGGACCCGCCCAAGCGCCAAATAAAC
GGCGACAGGGTATCGAAAGCTGCCTTGAACAAGGGTTGGCTCAAGTCGAG
ATTGGGTATGGAGGGGTTGGGCCCGTAAGGGGTGTTGCTCCAGGCACAGA
TCCCATAGTCGCACTTGTTGGGGGGCCACCAGTCCGTCGTTGCGCAGATG
TAATCCTCACCTGTCCTGGCAATGATATTGGCTCCAAGGCTCAGGTTGAT
TACCTGGGCGGTCGGGGCTTTGAAAGCAGGCCCGGGGGCCAGGGCCAGCA
GGCCGTCCAAGGCGCCGCGCAAGGCCATGTTGCTGTGTCGAGTTGGGCGT
GTGGGGATGGGGGTTGGTTGCTGGTGAGGAACCAACGAGAAGCGCGGCAA
AAATCGTGCAAGCCGTTTAGGCAGGAGACGTACGGCATAGGGAAGCTTGT
ACTGGACATACGGGTGAGTGAATAAGAGAGTGTGGTCGGGGGAAAAGAGG
CAAAGAGTGAAAGGGAAGAGCCCACATTCGATTCATCGCCAACAACGAAG
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protein sequence of NO11G02040.1

>NO11G02040.1-protein ID=NO11G02040.1-protein|Name=NO11G02040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=626bp
MRRTTSPSTEQVKFHRPCSLLFVHITTTQVSPETPTSRAFESCPPQGPVH
VFSFTSTTMDVVSTSTKGSQLPRRYKCKYEGCGKAFTKSSNLVQHVRIHT
GERPFPCKYPGCGKNFRQSGNLTKHMRSHEHSHLRWKRNTKEKPFRCTHL
GCEKSFTAKSSLKIHIAQHADHLSLSGNNHGMPIGITTPTRTGTAQDSLF
STPAGTTIHHHQQQQRQYHQHNHHHQQRQQQHQQQQQHERISSTISPFIK
SSTSSSSPTTTTTTTIMPSATRHTCNHPGCGAIFTSAYALKHHALIACST
LMDDHEHLRRLVNESVQLLALHVGARASPAVASFIDRVRDTNSKHVAGAR
QMQQEQQLLRQQQQQQQQQQQQQQQQQQVGGGAILPEEDEEEDEDEEEDE
DEDEDEDEEEVEGEEGEDQPQQQQRQPQGHRHQHAKHQQRLSSSSHQSSI
LQEQQQQQQHAQQPPHTRSGQNSMDWEQAAVHQQHQQQLLLPMTSLPAHT
HPSSSSDSNTMPPKKKERLMHLPAGNSNQGVGVIKADMTDDMGVGFSFTM
TPHGTLTGSSRFNGFENADGGREGGLLTPSANNLMSPGLAFDFPLSATEA
ATEGGMMGPQSVAIFSPSQGTFVFT*
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Synonyms
Publications