NO11G01870, NO11G01870 (gene) Nannochloropsis oceanica

Overview
NameNO11G01870
Unique NameNO11G01870
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2599
Alignment locationchr11:614002..616600 +

Link to JBrowse

Properties
Property NameValue
DescriptionDead-box atp-dependent rna helicase 50-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:614002..616600 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO:0016787hydrolase activity
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR014014RNA_helicase_DEAD_Q_motif
IPR011545DEAD/DEAH_box_helicase_dom
IPR001650Helicase_C
IPR014001Helicase_ATP-bd
Homology
BLAST of NO11G01870 vs. NCBI_GenBank
Match: ONK78823.1 (uncharacterized protein A4U43_C02F22800 [Asparagus officinalis])

HSP 1 Score: 347.8 bits (891), Expect = 8.000e-92
Identity = 197/417 (47.24%), Postives = 271/417 (64.99%), Query Frame = 0
Query:  316 DDFFFSRKAFDEIGASAEAQAAMQSLGISRPSKIQNIAYPHVLAGTSCILAEQTGSGKTLAYLLPLLQRLRQ--LEAAATAAGESPRAXXXXXXVVVLAPTAELAAQVATVARALTKH-LPLRVCCVTGGKNPRTQGEMLKSGVDVLIGTPGRVQYLLEEGKVLLGGMQALVLDEVDVMFLDDSFD--LSVIGAAAPAATQFLFVTATLPVAVADQISKEFPGVKKLWGPGLHKIAPQVEEVLVDCSGPMEEDRNEETAFVRKRDMLVQNLLKHQVRRSLVFCNSIPTCRKVENALRRADRSGNRWQILAYHSAVNPADREKHLGIF-SSRVERPLVMVCTDRTSRGVDFDKANVEHVVLFDFPRDPSEYVRXXXXXXXXXXXXXXT-ALVLGKQVGLARSIMEGNSKGARVHPVPN 726
            D  FFSRK F E+G + +   +++SL   RPS IQ +AY  VL G SC++A+Q+GSGKTLAYL+P++QRLRQ  L+    ++  SPR       VV+L PTAELA+QV    R+++KH +P R    TGG   +TQ + LK  +DVLI TPGR  YLL+EG V L  ++ +VLDEVD++F D+ F+  L  + ++AP   Q++FVTATLPV + +++ + FP      GPG+H+ + ++EEVLVDCSG   E +N ETAF+ K+  L+Q   +  V +++VFCN I TCRKVEN L+R DRSG   ++L +H+A+    R  ++  F +SR    + ++CTDR SRG+DF   NV+HVVLFDFPRDPSEYVR                  V+GKQV LAR IME N KG  +H VP+
Sbjct:  155 DSGFFSRKTFKELGCTGDMIESLRSLSFLRPSHIQALAYAPVLQGKSCVIADQSGSGKTLAYLIPIIQRLRQEELQGLGKSSSSSPR-------VVILVPTAELASQVLNNCRSISKHGVPFRSMVATGGFRQKTQLDSLKQELDVLIATPGRFIYLLQEGFVQLASLKCVVLDEVDILFGDEGFEQVLQSLISSAPMEAQYVFVTATLPVDIYNKLVQIFPDCGVTMGPGIHRTSSRLEEVLVDCSGEGME-KNPETAFINKKSALLQLAEESPVAKTIVFCNKIETCRKVENVLKRFDRSGLHIKVLPFHAALAQDVRRANMKEFLNSRSRDSMFLICTDRASRGIDF--PNVDHVVLFDFPRDPSEYVRRVGRTARGAKGEGKALVFVVGKQVSLARRIMERNKKGHPLHDVPS 561          
BLAST of NO11G01870 vs. NCBI_GenBank
Match: XP_020255041.1 (LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase 50 [Asparagus officinalis])

HSP 1 Score: 347.8 bits (891), Expect = 8.000e-92
Identity = 197/417 (47.24%), Postives = 271/417 (64.99%), Query Frame = 0
Query:  316 DDFFFSRKAFDEIGASAEAQAAMQSLGISRPSKIQNIAYPHVLAGTSCILAEQTGSGKTLAYLLPLLQRLRQ--LEAAATAAGESPRAXXXXXXVVVLAPTAELAAQVATVARALTKH-LPLRVCCVTGGKNPRTQGEMLKSGVDVLIGTPGRVQYLLEEGKVLLGGMQALVLDEVDVMFLDDSFD--LSVIGAAAPAATQFLFVTATLPVAVADQISKEFPGVKKLWGPGLHKIAPQVEEVLVDCSGPMEEDRNEETAFVRKRDMLVQNLLKHQVRRSLVFCNSIPTCRKVENALRRADRSGNRWQILAYHSAVNPADREKHLGIF-SSRVERPLVMVCTDRTSRGVDFDKANVEHVVLFDFPRDPSEYVRXXXXXXXXXXXXXXT-ALVLGKQVGLARSIMEGNSKGARVHPVPN 726
            D  FFSRK F E+G + +   +++SL   RPS IQ +AY  VL G SC++A+Q+GSGKTLAYL+P++QRLRQ  L+    ++  SPR       VV+L PTAELA+QV    R+++KH +P R    TGG   +TQ + LK  +DVLI TPGR  YLL+EG V L  ++ +VLDEVD++F D+ F+  L  + ++AP   Q++FVTATLPV + +++ + FP      GPG+H+ + ++EEVLVDCSG   E +N ETAF+ K+  L+Q   +  V +++VFCN I TCRKVEN L+R DRSG   ++L +H+A+    R  ++  F +SR    + ++CTDR SRG+DF   NV+HVVLFDFPRDPSEYVR                  V+GKQV LAR IME N KG  +H VP+
Sbjct:  253 DSGFFSRKTFKELGCTGDMIESLRSLSFLRPSHIQALAYAPVLQGKSCVIADQSGSGKTLAYLIPIIQRLRQEELQGLGKSSSSSPR-------VVILVPTAELASQVLNNCRSISKHGVPFRSMVATGGFRQKTQLDSLKQELDVLIATPGRFIYLLQEGFVQLASLKCVVLDEVDILFGDEGFEQVLQSLISSAPMEAQYVFVTATLPVDIYNKLVQIFPDCGVTMGPGIHRTSSRLEEVLVDCSGEGME-KNPETAFINKKSALLQLAEESPVAKTIVFCNKIETCRKVENVLKRFDRSGLHIKVLPFHAALAQDVRRANMKEFLNSRSRDSMFLICTDRASRGIDF--PNVDHVVLFDFPRDPSEYVRRVGRTARGAKGEGKALVFVVGKQVSLARRIMERNKKGHPLHDVPS 659          
BLAST of NO11G01870 vs. NCBI_GenBank
Match: XP_020229176.1 (DEAD-box ATP-dependent RNA helicase 50 [Cajanus cajan] >KYP53569.1 DEAD-box ATP-dependent RNA helicase 50 [Cajanus cajan])

HSP 1 Score: 347.1 bits (889), Expect = 1.400e-91
Identity = 192/418 (45.93%), Postives = 277/418 (66.27%), Query Frame = 0
Query:  316 DDFFFSRKAFDEIGASAEAQAAMQSLGISRPSKIQNIAYPHVLAGTSCILAEQTGSGKTLAYLLPLLQRLRQ--LEAAATAAGESPRAXXXXXXVVVLAPTAELAAQVATVARALTKH-LPLRVCCVTGGKNPRTQGEMLKSGVDVLIGTPGRVQYLLEEGKVLLGGMQALVLDEVDVMFLDDSFD--LSVIGAAAPAATQFLFVTATLPVAVADQISKEFPGVKKLWGPGLHKIAPQVEEVLVDCSGPMEEDRNEETAFVRKRDMLVQNLLKHQVRRSLVFCNSIPTCRKVENALRRADRSGNRWQILAYHSAVNPADREKHLGIFSSRVERPL--VMVCTDRTSRGVDFDKANVEHVVLFDFPRDPSEYVRXXXXXXXXXXXXXXTAL-VLGKQVGLARSIMEGNSKGARVHPVPN 726
            D  FFS K+F +IG +     ++Q L  +RPS +Q +A+  V  G +C++A+Q+GSGKTLAYL P++QRLRQ  L+  + ++ ++PR       V+VLAPTAELA+QV    R+L+K  +P +   VTGG   RTQ E L+ GVDVLI TPGR  +L+ EG + L  ++  VLDEVD++F D+ F+  L  +  ++P  TQ+LFVTATLP  +  ++ + FP  + + GPG+H+I+ ++EE++VDCSG   +++  +TAF+ K+D L+Q + ++ V R++VFCN I TCRKVEN+LRR DR GNR Q+L +H+A+    R   +  F+S   + +  +M+CTDR SRG+DF  A V+HV+LFDFPRDPSEYVR                + V+GKQV LAR IME N KG  +H VP+
Sbjct:  104 DTNFFSLKSFKQIGCTDYIIQSLQKLSFTRPSHVQAMAFAPVFRGKTCVIADQSGSGKTLAYLAPIIQRLRQEELDGRSKSSSQAPR-------VLVLAPTAELASQVLDNCRSLSKSGVPFKSMVVTGGFRQRTQLENLQQGVDVLIATPGRFLFLINEGFLQLTNLRCAVLDEVDILFGDEDFEVALQCLINSSPVDTQYLFVTATLPKNIYSKLVEVFPDCEMIMGPGMHRISSRLEEIVVDCSGEDGQEKTPDTAFLNKKDALLQLVEENPVPRTIVFCNKIETCRKVENSLRRFDRKGNRVQVLPFHAAMTQESRLASMEEFTSPPSKGVSQIMICTDRASRGIDF--AGVDHVMLFDFPRDPSEYVRRVGRTARGAKGVGKAFIFVVGKQVSLARKIMERNRKGHPLHDVPS 512          
BLAST of NO11G01870 vs. NCBI_GenBank
Match: XP_018817943.1 (PREDICTED: DEAD-box ATP-dependent RNA helicase 50 isoform X1 [Juglans regia])

HSP 1 Score: 347.1 bits (889), Expect = 1.400e-91
Identity = 193/414 (46.62%), Postives = 272/414 (65.70%), Query Frame = 0
Query:  319 FFSRKAFDEIGASAEAQAAMQSLGISRPSKIQNIAYPHVLAGTSCILAEQTGSGKTLAYLLPLLQRLRQ--LEAAATAAGESPRAXXXXXXVVVLAPTAELAAQVATVARALTKH-LPLRVCCVTGGKNPRTQGEMLKSGVDVLIGTPGRVQYLLEEGKVLLGGMQALVLDEVDVMFLDDSFDLSV--IGAAAPAATQFLFVTATLPVAVADQISKEFPGVKKLWGPGLHKIAPQVEEVLVDCSGPMEEDRNEETAFVRKRDMLVQNLLKHQVRRSLVFCNSIPTCRKVENALRRADRSGNRWQILAYHSAVNPADREKHLGIFSSRVERPL--VMVCTDRTSRGVDFDKANVEHVVLFDFPRDPSEYVRXXXXXXXXXXXXXXT-ALVLGKQVGLARSIMEGNSKGARVHPVP 725
            FFS+K+F E+G S     +++ L  SRPS IQ +A+P V+ G SCI+A+Q+GSGKTLAYL P++QRLRQ  L+  +  + +SPR       VV++ PTAELA+QV    RA++K  +P +   VTGG   RTQ E LK GVDVLI TPGR  +L++EG + L  +++ VLDEVD++F D+ F++++  +  ++P   Q+LFVTATLP  + +++ + FP  + + GPG+H+I+P +EEVLVDCSG  E ++  ETAF+ K+  L+Q + +  V ++++FCN I TCRKVENAL+R DR G R Q+L +H+AV    R  +   F+      +   +VCTDR SRG+DF    V+HVVLFDFPRDPSEYVR                  V+GKQV LAR+IM  N KG  +H +P
Sbjct:  310 FFSKKSFGELGCSEFMIESLRGLRYSRPSHIQAMAFPFVIEGNSCIIADQSGSGKTLAYLAPIIQRLRQEELQELSKTSSQSPR-------VVIIVPTAELASQVLHNCRAISKSGVPFKSMVVTGGFRQRTQLENLKQGVDVLIATPGRFMFLIKEGFLQLINLRSAVLDEVDILFNDEDFEVALKSLMDSSPVTAQYLFVTATLPRDIYNKLVEIFPDCEVIMGPGMHRISPGLEEVLVDCSGQDEIEKTPETAFLHKKSALLQLVEESPVSKTIIFCNKIETCRKVENALKRLDRKGTRVQVLPFHAAVEQESRLANFKEFTRNQTDKVSQFLVCTDRASRGIDF--TGVDHVVLFDFPRDPSEYVRRVGRTARGASGKGKAFVFVVGKQVSLARNIMSRNQKGHPLHDLP 714          
BLAST of NO11G01870 vs. NCBI_GenBank
Match: XP_018817944.1 (PREDICTED: DEAD-box ATP-dependent RNA helicase 50 isoform X2 [Juglans regia])

HSP 1 Score: 347.1 bits (889), Expect = 1.400e-91
Identity = 193/414 (46.62%), Postives = 272/414 (65.70%), Query Frame = 0
Query:  319 FFSRKAFDEIGASAEAQAAMQSLGISRPSKIQNIAYPHVLAGTSCILAEQTGSGKTLAYLLPLLQRLRQ--LEAAATAAGESPRAXXXXXXVVVLAPTAELAAQVATVARALTKH-LPLRVCCVTGGKNPRTQGEMLKSGVDVLIGTPGRVQYLLEEGKVLLGGMQALVLDEVDVMFLDDSFDLSV--IGAAAPAATQFLFVTATLPVAVADQISKEFPGVKKLWGPGLHKIAPQVEEVLVDCSGPMEEDRNEETAFVRKRDMLVQNLLKHQVRRSLVFCNSIPTCRKVENALRRADRSGNRWQILAYHSAVNPADREKHLGIFSSRVERPL--VMVCTDRTSRGVDFDKANVEHVVLFDFPRDPSEYVRXXXXXXXXXXXXXXT-ALVLGKQVGLARSIMEGNSKGARVHPVP 725
            FFS+K+F E+G S     +++ L  SRPS IQ +A+P V+ G SCI+A+Q+GSGKTLAYL P++QRLRQ  L+  +  + +SPR       VV++ PTAELA+QV    RA++K  +P +   VTGG   RTQ E LK GVDVLI TPGR  +L++EG + L  +++ VLDEVD++F D+ F++++  +  ++P   Q+LFVTATLP  + +++ + FP  + + GPG+H+I+P +EEVLVDCSG  E ++  ETAF+ K+  L+Q + +  V ++++FCN I TCRKVENAL+R DR G R Q+L +H+AV    R  +   F+      +   +VCTDR SRG+DF    V+HVVLFDFPRDPSEYVR                  V+GKQV LAR+IM  N KG  +H +P
Sbjct:  301 FFSKKSFGELGCSEFMIESLRGLRYSRPSHIQAMAFPFVIEGNSCIIADQSGSGKTLAYLAPIIQRLRQEELQELSKTSSQSPR-------VVIIVPTAELASQVLHNCRAISKSGVPFKSMVVTGGFRQRTQLENLKQGVDVLIATPGRFMFLIKEGFLQLINLRSAVLDEVDILFNDEDFEVALKSLMDSSPVTAQYLFVTATLPRDIYNKLVEIFPDCEVIMGPGMHRISPGLEEVLVDCSGQDEIEKTPETAFLHKKSALLQLVEESPVSKTIIFCNKIETCRKVENALKRLDRKGTRVQVLPFHAAVEQESRLANFKEFTRNQTDKVSQFLVCTDRASRGIDF--TGVDHVVLFDFPRDPSEYVRRVGRTARGASGKGKAFVFVVGKQVSLARNIMSRNQKGHPLHDLP 705          
BLAST of NO11G01870 vs. NCBI_GenBank
Match: Q0DVX2.2 (RecName: Full=DEAD-box ATP-dependent RNA helicase 50 >ABF93566.1 DEAD/DEAH box helicase, putative, expressed [Oryza sativa Japonica Group] >BAG89672.1 unnamed protein product [Oryza sativa Japonica Group] >EEE58182.1 hypothetical protein OsJ_09113 [Oryza sativa Japonica Group] >BAS81898.1 Os03g0108600 [Oryza sativa Japonica Group])

HSP 1 Score: 346.3 bits (887), Expect = 2.300e-91
Identity = 193/416 (46.39%), Postives = 270/416 (64.90%), Query Frame = 0
Query:  316 DDFFFSRKAFDEIGASAEAQAAMQSLGISRPSKIQNIAYPHVLAGTSCILAEQTGSGKTLAYLLPLLQRLR--QLEAAATAAGESPRAXXXXXXVVVLAPTAELAAQVATVARALTKH-LPLRVCCVTGGKNPRTQGEMLKSGVDVLIGTPGRVQYLLEEGKVLLGGMQALVLDEVDVMFLDDSFD--LSVIGAAAPAATQFLFVTATLPVAVADQISKEFPGVKKLWGPGLHKIAPQVEEVLVDCSGPMEEDRNEETAFVRKRDMLVQNLLKHQVRRSLVFCNSIPTCRKVENALRRADRSGNRWQILAYHSAVNPADREKHLGIF-SSRVERPLVMVCTDRTSRGVDFDKANVEHVVLFDFPRDPSEYVRXXXXXXXXXXXXXXT-ALVLGKQVGLARSIMEGNSKGARVHPVP 725
            D  FFSR++F EIG S E   A++S G  RPS IQ +AY  VL G SCI+ +Q+GSGKTLAYL P++Q LR  ++E    ++  +PR       VVVL PTAELA+QV    R+++K  +P R    TGG   +TQ E L   +DVLI TPGR  YLL+EG V L  ++ +VLDEVD+++ ++SF+  L  +   AP  TQ+LFVTATLP+ + +++ + FP  + + GPG+H+ + ++EE+LVDCSG   E++N ETAF  K+  LV+ + +  VR++++FCN I TCRKVENALRR DR  ++ ++L +H+A++   R  ++  F + +    + +VCTDR SRG+DF  ANV HVVLFD+PRDPSEYVR                   +GKQV LAR +ME N KG  +H VP
Sbjct:  233 DSGFFSRRSFKEIGCSDEILGALRSFGFPRPSHIQAMAYRPVLEGKSCIIGDQSGSGKTLAYLCPVVQNLRKEEVEGLHRSSPRNPR-------VVVLTPTAELASQVLNNCRSISKSGVPFRSMVATGGFRQKTQLESLDQELDVLIATPGRFLYLLQEGFVQLNNLRCVVLDEVDILYGEESFEQVLHQLITVAPLTTQYLFVTATLPLDIYNKVVETFPDCELIMGPGVHRTSSRLEEILVDCSGDDNEEKNPETAFSNKKSALVKIIEESPVRKTIIFCNKIETCRKVENALRRVDRKASQIKVLPFHAALDQQQRIANIKEFLNKQTADSMFLVCTDRASRGIDF--ANVNHVVLFDYPRDPSEYVRRVGRTARGASGNGKAFVFAVGKQVSLARRVMERNIKGHPLHDVP 639          
BLAST of NO11G01870 vs. NCBI_GenBank
Match: BAF10616.1 (Os03g0108600, partial [Oryza sativa Japonica Group])

HSP 1 Score: 346.3 bits (887), Expect = 2.300e-91
Identity = 193/416 (46.39%), Postives = 270/416 (64.90%), Query Frame = 0
Query:  316 DDFFFSRKAFDEIGASAEAQAAMQSLGISRPSKIQNIAYPHVLAGTSCILAEQTGSGKTLAYLLPLLQRLR--QLEAAATAAGESPRAXXXXXXVVVLAPTAELAAQVATVARALTKH-LPLRVCCVTGGKNPRTQGEMLKSGVDVLIGTPGRVQYLLEEGKVLLGGMQALVLDEVDVMFLDDSFD--LSVIGAAAPAATQFLFVTATLPVAVADQISKEFPGVKKLWGPGLHKIAPQVEEVLVDCSGPMEEDRNEETAFVRKRDMLVQNLLKHQVRRSLVFCNSIPTCRKVENALRRADRSGNRWQILAYHSAVNPADREKHLGIF-SSRVERPLVMVCTDRTSRGVDFDKANVEHVVLFDFPRDPSEYVRXXXXXXXXXXXXXXT-ALVLGKQVGLARSIMEGNSKGARVHPVP 725
            D  FFSR++F EIG S E   A++S G  RPS IQ +AY  VL G SCI+ +Q+GSGKTLAYL P++Q LR  ++E    ++  +PR       VVVL PTAELA+QV    R+++K  +P R    TGG   +TQ E L   +DVLI TPGR  YLL+EG V L  ++ +VLDEVD+++ ++SF+  L  +   AP  TQ+LFVTATLP+ + +++ + FP  + + GPG+H+ + ++EE+LVDCSG   E++N ETAF  K+  LV+ + +  VR++++FCN I TCRKVENALRR DR  ++ ++L +H+A++   R  ++  F + +    + +VCTDR SRG+DF  ANV HVVLFD+PRDPSEYVR                   +GKQV LAR +ME N KG  +H VP
Sbjct:  245 DSGFFSRRSFKEIGCSDEILGALRSFGFPRPSHIQAMAYRPVLEGKSCIIGDQSGSGKTLAYLCPVVQNLRKEEVEGLHRSSPRNPR-------VVVLTPTAELASQVLNNCRSISKSGVPFRSMVATGGFRQKTQLESLDQELDVLIATPGRFLYLLQEGFVQLNNLRCVVLDEVDILYGEESFEQVLHQLITVAPLTTQYLFVTATLPLDIYNKVVETFPDCELIMGPGVHRTSSRLEEILVDCSGDDNEEKNPETAFSNKKSALVKIIEESPVRKTIIFCNKIETCRKVENALRRVDRKASQIKVLPFHAALDQQQRIANIKEFLNKQTADSMFLVCTDRASRGIDF--ANVNHVVLFDYPRDPSEYVRRVGRTARGASGNGKAFVFAVGKQVSLARRVMERNIKGHPLHDVP 651          
BLAST of NO11G01870 vs. NCBI_GenBank
Match: EEC74363.1 (hypothetical protein OsI_09674 [Oryza sativa Indica Group])

HSP 1 Score: 346.3 bits (887), Expect = 2.300e-91
Identity = 193/416 (46.39%), Postives = 270/416 (64.90%), Query Frame = 0
Query:  316 DDFFFSRKAFDEIGASAEAQAAMQSLGISRPSKIQNIAYPHVLAGTSCILAEQTGSGKTLAYLLPLLQRLR--QLEAAATAAGESPRAXXXXXXVVVLAPTAELAAQVATVARALTKH-LPLRVCCVTGGKNPRTQGEMLKSGVDVLIGTPGRVQYLLEEGKVLLGGMQALVLDEVDVMFLDDSFD--LSVIGAAAPAATQFLFVTATLPVAVADQISKEFPGVKKLWGPGLHKIAPQVEEVLVDCSGPMEEDRNEETAFVRKRDMLVQNLLKHQVRRSLVFCNSIPTCRKVENALRRADRSGNRWQILAYHSAVNPADREKHLGIF-SSRVERPLVMVCTDRTSRGVDFDKANVEHVVLFDFPRDPSEYVRXXXXXXXXXXXXXXT-ALVLGKQVGLARSIMEGNSKGARVHPVP 725
            D  FFSR++F EIG S E   A++S G  RPS IQ +AY  VL G SCI+ +Q+GSGKTLAYL P++Q LR  ++E    ++  +PR       VVVL PTAELA+QV    R+++K  +P R    TGG   +TQ E L   +DVLI TPGR  YLL+EG V L  ++ +VLDEVD+++ ++SF+  L  +   AP  TQ+LFVTATLP+ + +++ + FP  + + GPG+H+ + ++EE+LVDCSG   E++N ETAF  K+  LV+ + +  VR++++FCN I TCRKVENALRR DR  ++ ++L +H+A++   R  ++  F + +    + +VCTDR SRG+DF  ANV HVVLFD+PRDPSEYVR                   +GKQV LAR +ME N KG  +H VP
Sbjct:  212 DSGFFSRRSFKEIGCSDEILGALRSFGFPRPSHIQAMAYRPVLEGKSCIIGDQSGSGKTLAYLCPVVQNLRKEEVEGLHRSSPRNPR-------VVVLTPTAELASQVLNNCRSISKSGVPFRSMVATGGFRQKTQLESLDQELDVLIATPGRFLYLLQEGFVQLNNLRCVVLDEVDILYGEESFEQVLHQLITVAPLTTQYLFVTATLPLDIYNKVVETFPDCELIMGPGVHRTSSRLEEILVDCSGDDNEEKNPETAFSNKKSALVKIIEESPVRKTIIFCNKIETCRKVENALRRVDRKASQIKVLPFHAALDQQQRIANIKEFLNKQTADSMFLVCTDRASRGIDF--ANVNHVVLFDYPRDPSEYVRRVGRTARGASGNGKAFVFAVGKQVSLARRVMERNIKGHPLHDVP 618          
BLAST of NO11G01870 vs. NCBI_GenBank
Match: XP_015631671.1 (PREDICTED: DEAD-box ATP-dependent RNA helicase 50 [Oryza sativa Japonica Group])

HSP 1 Score: 346.3 bits (887), Expect = 2.300e-91
Identity = 193/416 (46.39%), Postives = 270/416 (64.90%), Query Frame = 0
Query:  316 DDFFFSRKAFDEIGASAEAQAAMQSLGISRPSKIQNIAYPHVLAGTSCILAEQTGSGKTLAYLLPLLQRLR--QLEAAATAAGESPRAXXXXXXVVVLAPTAELAAQVATVARALTKH-LPLRVCCVTGGKNPRTQGEMLKSGVDVLIGTPGRVQYLLEEGKVLLGGMQALVLDEVDVMFLDDSFD--LSVIGAAAPAATQFLFVTATLPVAVADQISKEFPGVKKLWGPGLHKIAPQVEEVLVDCSGPMEEDRNEETAFVRKRDMLVQNLLKHQVRRSLVFCNSIPTCRKVENALRRADRSGNRWQILAYHSAVNPADREKHLGIF-SSRVERPLVMVCTDRTSRGVDFDKANVEHVVLFDFPRDPSEYVRXXXXXXXXXXXXXXT-ALVLGKQVGLARSIMEGNSKGARVHPVP 725
            D  FFSR++F EIG S E   A++S G  RPS IQ +AY  VL G SCI+ +Q+GSGKTLAYL P++Q LR  ++E    ++  +PR       VVVL PTAELA+QV    R+++K  +P R    TGG   +TQ E L   +DVLI TPGR  YLL+EG V L  ++ +VLDEVD+++ ++SF+  L  +   AP  TQ+LFVTATLP+ + +++ + FP  + + GPG+H+ + ++EE+LVDCSG   E++N ETAF  K+  LV+ + +  VR++++FCN I TCRKVENALRR DR  ++ ++L +H+A++   R  ++  F + +    + +VCTDR SRG+DF  ANV HVVLFD+PRDPSEYVR                   +GKQV LAR +ME N KG  +H VP
Sbjct:  295 DSGFFSRRSFKEIGCSDEILGALRSFGFPRPSHIQAMAYRPVLEGKSCIIGDQSGSGKTLAYLCPVVQNLRKEEVEGLHRSSPRNPR-------VVVLTPTAELASQVLNNCRSISKSGVPFRSMVATGGFRQKTQLESLDQELDVLIATPGRFLYLLQEGFVQLNNLRCVVLDEVDILYGEESFEQVLHQLITVAPLTTQYLFVTATLPLDIYNKVVETFPDCELIMGPGVHRTSSRLEEILVDCSGDDNEEKNPETAFSNKKSALVKIIEESPVRKTIIFCNKIETCRKVENALRRVDRKASQIKVLPFHAALDQQQRIANIKEFLNKQTADSMFLVCTDRASRGIDF--ANVNHVVLFDYPRDPSEYVRRVGRTARGASGNGKAFVFAVGKQVSLARRVMERNIKGHPLHDVP 701          
BLAST of NO11G01870 vs. NCBI_GenBank
Match: XP_010694129.1 (PREDICTED: DEAD-box ATP-dependent RNA helicase 50 [Beta vulgaris subsp. vulgaris] >KMS98611.1 hypothetical protein BVRB_3g070540 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 344.4 bits (882), Expect = 8.900e-91
Identity = 196/415 (47.23%), Postives = 268/415 (64.58%), Query Frame = 0
Query:  319 FFSRKAFDEIGASAEAQAAMQSLGISRPSKIQNIAYPHVLAGTSCILAEQTGSGKTLAYLLPLLQRLRQ--LEAAATAAGESPRAXXXXXXVVVLAPTAELAAQVATVARALTKH-LPLRVCCVTGGKNPRTQGEMLKSGVDVLIGTPGRVQYLLEEGKVLLGGMQALVLDEVDVMFLDDSFD--LSVIGAAAPAATQFLFVTATLPVAVADQISKEFPGVKKLWGPGLHKIAPQVEEVLVDCSGPMEEDRNEETAFVRKRDMLVQNLLKHQVRRSLVFCNSIPTCRKVENALRRADRSGNRWQILAYHSAVNPADREKHLGIF--SSRVERPLVMVCTDRTSRGVDFDKANVEHVVLFDFPRDPSEYVRXXXXXXXXXXXXXXT-ALVLGKQVGLARSIMEGNSKGARVHPVPN 726
            FFSRK+F E+G   E    +++    RPS IQ IAYP V+ G SCI+A+Q+GSGKTLAYL P++QRLRQ   E  + ++ +SPRA       V+L PTAELA+QV    R+++KH +P R    TGG   RTQ + L+  +DVLI TPGR  YL++EG + L  ++  VLDEVD++F D+ F+  L  +   AP  TQ+LFVTATLPV + +++ + FP  + + GPG+H+ +  +EEVLVDCSG  E ++  ETAF  K+  L++   +  V R++VFCN I TCRKVENALRR DR  N+ +IL +H+A+    R  ++  F   +   R L ++CTDR SRG+DF   +V+HVVLFDFPRDPSEYVR                 LV+GKQV LAR I++ N KG  +H VP+
Sbjct:  269 FFSRKSFRELGCCDEMIETLRAQDFVRPSHIQAIAYPPVVEGKSCIIADQSGSGKTLAYLAPVVQRLRQEETEGLSKSSSKSPRA-------VILVPTAELASQVLRNCRSISKHGVPFRSMVATGGFRQRTQLQSLEQELDVLIVTPGRFMYLIKEGFLQLTNLRCAVLDEVDILFSDEDFEQALQSLINTAPVTTQYLFVTATLPVDIYNKLVETFPDSEVVMGPGMHRTSSGLEEVLVDCSGKEESEKTPETAFANKKSALLRLAEQSPVSRTIVFCNRIETCRKVENALRRLDRKENQIRILPFHAALEQETRLTNMKEFLNPATENRSLFLICTDRASRGIDF--PSVDHVVLFDFPRDPSEYVRRVGRTARGAGGIGKAFVLVVGKQVSLARRIIDRNQKGHPLHEVPS 674          
The following BLAST results are available for this feature:
BLAST of NO11G01870 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
ONK78823.18.000e-9247.24uncharacterized protein A4U43_C02F22800 [Asparagus... [more]
XP_020255041.18.000e-9247.24LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA he... [more]
XP_020229176.11.400e-9145.93DEAD-box ATP-dependent RNA helicase 50 [Cajanus ca... [more]
XP_018817943.11.400e-9146.62PREDICTED: DEAD-box ATP-dependent RNA helicase 50 ... [more]
XP_018817944.11.400e-9146.62PREDICTED: DEAD-box ATP-dependent RNA helicase 50 ... [more]
Q0DVX2.22.300e-9146.39RecName: Full=DEAD-box ATP-dependent RNA helicase ... [more]
BAF10616.12.300e-9146.39Os03g0108600, partial [Oryza sativa Japonica Group... [more]
EEC74363.12.300e-9146.39hypothetical protein OsI_09674 [Oryza sativa Indic... [more]
XP_015631671.12.300e-9146.39PREDICTED: DEAD-box ATP-dependent RNA helicase 50 ... [more]
XP_010694129.18.900e-9147.23PREDICTED: DEAD-box ATP-dependent RNA helicase 50 ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002075NSK002075Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G01870.1NO11G01870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591319gene_5075Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100049g5gene5470Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G01870.1NO11G01870.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G01870 ID=NO11G01870|Name=NO11G01870|organism=Nannochloropsis oceanica|type=gene|length=2599bp
CAGCTTGTCTACCGGAAACAGATTTGTGATAATGACGAGGCCGGCATGGA
CAGGGCAACAATGTAGAAGAAGACGCATCGGCGGCGCCCTCACTGCTGCC
GCTGCAACTTGCCTATTGTGGGCCAACGGGACCGTAGCCTTTACAGGGCG
TGCGTGCTTGCTATCCCGGAGCAAGTCGTCGTCGTCATCGTTGATGCTGC
TGCGTAATTCGGCTGCCTTGACAACGGCGGCCCGCCGGGAGGGTGGGGAC
GGGGATGGTGGTGGTGGTAGGGCGGGGGGAGGTGATCGACGCCGGACTGA
TGGTGGGCCGCCGCGCTCGTATGGCGGCGGTAGTGCTGGTACCAAGCGTG
GCGGTAGTGGAAGTGACAGTAGAGGAGGAGCCGGACGAGATCCGTCGCGG
AAGGATGATTTTCTAGCCCCTGATTTTGACTTGGAGGACCTGTTGAAGGA
CGATGGGGAAGGAGTTAACTGGAAACCAAAACAAGAACGACCTGACCCGC
CTTCGCGTCGGAAAAGCAGCACGGGTGGAGCACCTGCAGATCGACGAGGG
GGCTATGGAAGTTATGGAGGGAGTGCTGGGCCGCGCCCTCGTCCAGAAAG
GGAAGGACGAAGTGTAAATTCGAACCCGAAGGAAGTGAGTGGGGAGGAGT
ACCGTCAGAAGCGACGGCTGGAAGGAGCCCGTCGTCGGCCTGAGGGAAGG
CCGCAAGCGAGGGGGGATCAGCAGACGCCGGTATGGAATAGGAGGGAGGC
GGAGGAGGACTTTGGTAAGCGGGAATTCGAGTTTGAGGGAGAGGAAGGGC
GGGATGACGAGGAGGAGGAGGAGTATGGCCTGGAGCCGATGGAGTACTAT
GAGGAGCGTTTTGCTGGGGAGGCGTTTTTTGGCGGTGAGAACAATAACGA
GGACGAGGAGGACGACGATGATGGCGGCAGAGGGAGAGGAAGGATGGGGA
AGAGGGAGGCCGCGGCAAGGCTGGCGGACGATTTCTTCTTCAGTCGCAAG
GCGTTTGATGAAATTGGAGCGAGCGCCGAGGCGCAGGCAGCCATGCAGTC
TCTGGGAATCTCCCGCCCATCAAAGATTCAAAATATTGCTTATCCTCACG
TATTGGCGGGCACCTCATGCATCCTTGCCGAGCAAACGGGGTCGGGGAAG
ACGCTCGCTTACCTACTCCCCCTCCTTCAACGGCTGCGTCAGCTGGAGGC
CGCCGCAACTGCAGCAGGCGAATCCCCGCGCGCTCCTCCTAAATCACCAC
GGGTGGTTGTGTTGGCGCCGACGGCAGAGCTTGCTGCACAAGTGGCAACG
GTTGCAAGGGCGTTGACGAAACATTTACCGTTGCGGGTGTGTTGTGTTAC
GGGGGGGAAGAACCCGCGGACGCAGGGAGAGATGCTGAAAAGTGGGGTAG
ATGTCTTGATTGGCACCCCTGGGAGGGTGCAATATCTGTTGGAGGAAGGC
AAGGTATTGCTGGGGGGGATGCAGGCCTTAGTCCTTGATGAGGTGGACGT
GATGTTTTTGGACGATTCGTTCGATCTTTCAGTGATTGGTGCTGCTGCTC
CTGCTGCTACTCAATTCTTGTTTGTCACAGCGACCTTGCCCGTGGCGGTG
GCGGATCAGATAAGCAAAGAGTTTCCAGGAGTTAAGAAGTTGTGGGGTCC
GGGGCTGCATAAGATCGCGCCTCAGGTGGAGGAAGTGTTGGTTGATTGTA
GCGGGCCAATGGAGGAGGATCGGAATGAGGAGACGGCATTCGTGCGGAAG
AGGgtaagactgcgggaagacgataaaagggaggggagggaggatgtttg
tttcttcgttgtattcccacgagtcgtcgacgaaaaggcgcgaatagcca
caagaactcatcctttccttcctcggctacatcaccacagGACATGCTTG
TCCAGAACCTGCTTAAGCACCAAGTGAGGCGCTCCTTGGTGTTCTGCAAC
TCCATCCCGACCTGTCGAAAAGTGGAAAATGCCTTGCGGAGGGCCGACCG
ATCAGGGAACAGGTGGCAAATCCTGGCTTATCACTCCGCAGTGAACCCGG
CGGACCGAGAGAAACATCTAGGTATTTTCTCTTCAAGAGTAGAGAGGCCC
TTGGTGATGGTATGTACGGATAGAACATCGCGGGGCGTAGACTTTGATAA
GGCAAATGTGGAGCACGTGGTGCTGTTTGATTTCCCGCGGGATCCCAGTG
AGTATGTTCGGAGGGTTGGGAGGACGGGAAGGGCGGGAAGGACGGGGCGG
GTGACGGCGTTGGTGTTGGGAAAACAGGTGGGCTTGGCCAGGTCGATTAT
GGAGGGAAATAGTAAGGGGGCACGAGTGCATCCGGTGCCGAACTAAGTGA
GGACGAGGGACGAGGGGGATAGGGGAAAGGGAGGAGAGACGATCTGAGAA
AAAGATCCAAATTGAAGAATGGAGACTTGGAGAAGACGATGAAAAAGGAA
AAACAATTGGGGAATAAAGAAAGGTATTTAAAAGAAGAAGAAGAAGATTA
AAAAAGAAATGGAATTACGACGACGACGAGCACATGTCGGGGAGTTGGCT
GGAAAGAAAGTGGGAGCGTATTCTCTACTTCGCATGAAAGTCTCGGGAA
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protein sequence of NO11G01870.1

>NO11G01870.1-protein ID=NO11G01870.1-protein|Name=NO11G01870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=726bp
MTRPAWTGQQCRRRRIGGALTAAAATCLLWANGTVAFTGRACLLSRSKSS
SSSLMLLRNSAALTTAARREGGDGDGGGGRAGGGDRRRTDGGPPRSYGGG
SAGTKRGGSGSDSRGGAGRDPSRKDDFLAPDFDLEDLLKDDGEGVNWKPK
QERPDPPSRRKSSTGGAPADRRGGYGSYGGSAGPRPRPEREGRSVNSNPK
EVSGEEYRQKRRLEGARRRPEGRPQARGDQQTPVWNRREAEEDFGKREFE
FEGEEGRDDEEEEEYGLEPMEYYEERFAGEAFFGGENNNEDEEDDDDGGR
GRGRMGKREAAARLADDFFFSRKAFDEIGASAEAQAAMQSLGISRPSKIQ
NIAYPHVLAGTSCILAEQTGSGKTLAYLLPLLQRLRQLEAAATAAGESPR
APPKSPRVVVLAPTAELAAQVATVARALTKHLPLRVCCVTGGKNPRTQGE
MLKSGVDVLIGTPGRVQYLLEEGKVLLGGMQALVLDEVDVMFLDDSFDLS
VIGAAAPAATQFLFVTATLPVAVADQISKEFPGVKKLWGPGLHKIAPQVE
EVLVDCSGPMEEDRNEETAFVRKRDMLVQNLLKHQVRRSLVFCNSIPTCR
KVENALRRADRSGNRWQILAYHSAVNPADREKHLGIFSSRVERPLVMVCT
DRTSRGVDFDKANVEHVVLFDFPRDPSEYVRRVGRTGRAGRTGRVTALVL
GKQVGLARSIMEGNSKGARVHPVPN*
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Synonyms
Publications