NO11G01870.1, NO11G01870.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G01870.1
Unique NameNO11G01870.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2462
Alignment locationchr11:614002..616600 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:614002..616600 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO11G01870.1 vs.
Match: EWM25042.1 (dead-box atp-dependent rna helicase 50-like protein [Nannochloropsis gaditana])

HSP 1 Score: 718.0 bits (1852), Expect = 2.900e-203
Identity = 376/465 (80.86%), Postives = 402/465 (86.45%), Query Frame = 0
Query:  261 EEEEYGLEPMEYYEERFAGEAFFGGENNNEDEEDDDDGGRGRGRMGKREAAARLADDFFFSRKAFDEIGASAEAQAAMQSLGISRPSKIQNIAYPHVLAGTSCILAEQTGSGKTLAYLLPLLQRLRQLEAAATAAGESPRAPPKSPRVVVLAPTAELAAQVATVARALTKHLPLRVCCVTGGKNPRTQGEMLKSGVDVLIGTPGRVQYLLEEGKVLLGGMQALVLDEVDVMFLDDSFDLSVIGAAAPAATQFLFVTATLPVAVADQISKEFPGVKKLWGPGLHKIAPQVEEVLVDCSGPMEEDRNEETAFVRKRDMLVQNLLKHQVRRSLVFCNSIPTCRKVENALRRADRSGNRWQILAYHSAVNPADREKHLGIFSSRVERPLVMVCTDRTSRGVDFDKANVEHVVLFDFPRDPSEYVRRVGRTGRAGRTGRVTALVLGKQVGLARSIMEGNSKGARVHPVPN 726
            EE E  +EP EYYEERF      GG     DE   D+           E AARLAD FFFSRK F+EIGAS EA+AA+ S+GI+RPSK+Q IAYPH+L G+SCI+AEQTGSGKTLAYLLPLLQRLR LE      G   RAPPKSPRVVVLAPTAELAAQVA+VARA+T+H+PLRVCCVTGGKNPRTQGEMLK GVDVLIGTPGRVQYLLEE KVLLG MQALVLDEVDVMFLDDSFDL+VIGAAAPA TQFLFVTATLPV VADQI++EFPGVKKLWGPGLHKIAPQVEEVLVDCSGP EE+RNEET FVRKRDMLVQNLLKH   RSLVFCNSIPTCRKVENALRRADR   RWQ+LAYHSAVNP DR+K+L IFSSRVERPL+MVCTDRTSRGVDFD A+V+HVVLFDFPRDPSEYVRRVGRTGRAGR GRVTALVLG+QVGLARSIMEGNSKGARVHPVPN
Sbjct:    4 EEGEKEVEPTEYYEERFRE----GGLRTEADEGGLDE-----------ERAARLADTFFFSRKTFEEIGASPEARAALGSMGIARPSKVQTIAYPHILQGSSCIIAEQTGSGKTLAYLLPLLQRLRGLEGGGEGKGGLGRAPPKSPRVVVLAPTAELAAQVASVARAMTRHMPLRVCCVTGGKNPRTQGEMLKQGVDVLIGTPGRVQYLLEENKVLLGEMQALVLDEVDVMFLDDSFDLAVIGAAAPAHTQFLFVTATLPVPVADQIAREFPGVKKLWGPGLHKIAPQVEEVLVDCSGPWEEERNEETGFVRKRDMLVQNLLKHPAPRSLVFCNSIPTCRKVENALRRADRQEKRWQVLAYHSAVNPQDRQKNLDIFSSRVERPLIMVCTDRTSRGVDFDTADVQHVVLFDFPRDPSEYVRRVGRTGRAGRVGRVTALVLGRQVGLARSIMEGNSKGARVHPVPN 453          
The following BLAST results are available for this feature:
BLAST of NO11G01870.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25042.12.900e-20380.86dead-box atp-dependent rna helicase 50-like protei... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G01870NO11G01870Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G01870.1NO11G01870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G01870.1.cds1NO11G01870.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01870.1.cds2NO11G01870.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G01870.1 ID=NO11G01870.1|Name=NO11G01870.1|organism=Nannochloropsis oceanica|type=mRNA|length=2462bp
CAGCTTGTCTACCGGAAACAGATTTGTGATAATGACGAGGCCGGCATGGA
CAGGGCAACAATGTAGAAGAAGACGCATCGGCGGCGCCCTCACTGCTGCC
GCTGCAACTTGCCTATTGTGGGCCAACGGGACCGTAGCCTTTACAGGGCG
TGCGTGCTTGCTATCCCGGAGCAAGTCGTCGTCGTCATCGTTGATGCTGC
TGCGTAATTCGGCTGCCTTGACAACGGCGGCCCGCCGGGAGGGTGGGGAC
GGGGATGGTGGTGGTGGTAGGGCGGGGGGAGGTGATCGACGCCGGACTGA
TGGTGGGCCGCCGCGCTCGTATGGCGGCGGTAGTGCTGGTACCAAGCGTG
GCGGTAGTGGAAGTGACAGTAGAGGAGGAGCCGGACGAGATCCGTCGCGG
AAGGATGATTTTCTAGCCCCTGATTTTGACTTGGAGGACCTGTTGAAGGA
CGATGGGGAAGGAGTTAACTGGAAACCAAAACAAGAACGACCTGACCCGC
CTTCGCGTCGGAAAAGCAGCACGGGTGGAGCACCTGCAGATCGACGAGGG
GGCTATGGAAGTTATGGAGGGAGTGCTGGGCCGCGCCCTCGTCCAGAAAG
GGAAGGACGAAGTGTAAATTCGAACCCGAAGGAAGTGAGTGGGGAGGAGT
ACCGTCAGAAGCGACGGCTGGAAGGAGCCCGTCGTCGGCCTGAGGGAAGG
CCGCAAGCGAGGGGGGATCAGCAGACGCCGGTATGGAATAGGAGGGAGGC
GGAGGAGGACTTTGGTAAGCGGGAATTCGAGTTTGAGGGAGAGGAAGGGC
GGGATGACGAGGAGGAGGAGGAGTATGGCCTGGAGCCGATGGAGTACTAT
GAGGAGCGTTTTGCTGGGGAGGCGTTTTTTGGCGGTGAGAACAATAACGA
GGACGAGGAGGACGACGATGATGGCGGCAGAGGGAGAGGAAGGATGGGGA
AGAGGGAGGCCGCGGCAAGGCTGGCGGACGATTTCTTCTTCAGTCGCAAG
GCGTTTGATGAAATTGGAGCGAGCGCCGAGGCGCAGGCAGCCATGCAGTC
TCTGGGAATCTCCCGCCCATCAAAGATTCAAAATATTGCTTATCCTCACG
TATTGGCGGGCACCTCATGCATCCTTGCCGAGCAAACGGGGTCGGGGAAG
ACGCTCGCTTACCTACTCCCCCTCCTTCAACGGCTGCGTCAGCTGGAGGC
CGCCGCAACTGCAGCAGGCGAATCCCCGCGCGCTCCTCCTAAATCACCAC
GGGTGGTTGTGTTGGCGCCGACGGCAGAGCTTGCTGCACAAGTGGCAACG
GTTGCAAGGGCGTTGACGAAACATTTACCGTTGCGGGTGTGTTGTGTTAC
GGGGGGGAAGAACCCGCGGACGCAGGGAGAGATGCTGAAAAGTGGGGTAG
ATGTCTTGATTGGCACCCCTGGGAGGGTGCAATATCTGTTGGAGGAAGGC
AAGGTATTGCTGGGGGGGATGCAGGCCTTAGTCCTTGATGAGGTGGACGT
GATGTTTTTGGACGATTCGTTCGATCTTTCAGTGATTGGTGCTGCTGCTC
CTGCTGCTACTCAATTCTTGTTTGTCACAGCGACCTTGCCCGTGGCGGTG
GCGGATCAGATAAGCAAAGAGTTTCCAGGAGTTAAGAAGTTGTGGGGTCC
GGGGCTGCATAAGATCGCGCCTCAGGTGGAGGAAGTGTTGGTTGATTGTA
GCGGGCCAATGGAGGAGGATCGGAATGAGGAGACGGCATTCGTGCGGAAG
AGGGACATGCTTGTCCAGAACCTGCTTAAGCACCAAGTGAGGCGCTCCTT
GGTGTTCTGCAACTCCATCCCGACCTGTCGAAAAGTGGAAAATGCCTTGC
GGAGGGCCGACCGATCAGGGAACAGGTGGCAAATCCTGGCTTATCACTCC
GCAGTGAACCCGGCGGACCGAGAGAAACATCTAGGTATTTTCTCTTCAAG
AGTAGAGAGGCCCTTGGTGATGGTATGTACGGATAGAACATCGCGGGGCG
TAGACTTTGATAAGGCAAATGTGGAGCACGTGGTGCTGTTTGATTTCCCG
CGGGATCCCAGTGAGTATGTTCGGAGGGTTGGGAGGACGGGAAGGGCGGG
AAGGACGGGGCGGGTGACGGCGTTGGTGTTGGGAAAACAGGTGGGCTTGG
CCAGGTCGATTATGGAGGGAAATAGTAAGGGGGCACGAGTGCATCCGGTG
CCGAACTAAGTGAGGACGAGGGACGAGGGGGATAGGGGAAAGGGAGGAGA
GACGATCTGAGAAAAAGATCCAAATTGAAGAATGGAGACTTGGAGAAGAC
GATGAAAAAGGAAAAACAATTGGGGAATAAAGAAAGGTATTTAAAAGAAG
AAGAAGAAGATTAAAAAAGAAATGGAATTACGACGACGACGAGCACATGT
CGGGGAGTTGGCTGGAAAGAAAGTGGGAGCGTATTCTCTACTTCGCATGA
AAGTCTCGGGAA
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protein sequence of NO11G01870.1

>NO11G01870.1-protein ID=NO11G01870.1-protein|Name=NO11G01870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=726bp
MTRPAWTGQQCRRRRIGGALTAAAATCLLWANGTVAFTGRACLLSRSKSS
SSSLMLLRNSAALTTAARREGGDGDGGGGRAGGGDRRRTDGGPPRSYGGG
SAGTKRGGSGSDSRGGAGRDPSRKDDFLAPDFDLEDLLKDDGEGVNWKPK
QERPDPPSRRKSSTGGAPADRRGGYGSYGGSAGPRPRPEREGRSVNSNPK
EVSGEEYRQKRRLEGARRRPEGRPQARGDQQTPVWNRREAEEDFGKREFE
FEGEEGRDDEEEEEYGLEPMEYYEERFAGEAFFGGENNNEDEEDDDDGGR
GRGRMGKREAAARLADDFFFSRKAFDEIGASAEAQAAMQSLGISRPSKIQ
NIAYPHVLAGTSCILAEQTGSGKTLAYLLPLLQRLRQLEAAATAAGESPR
APPKSPRVVVLAPTAELAAQVATVARALTKHLPLRVCCVTGGKNPRTQGE
MLKSGVDVLIGTPGRVQYLLEEGKVLLGGMQALVLDEVDVMFLDDSFDLS
VIGAAAPAATQFLFVTATLPVAVADQISKEFPGVKKLWGPGLHKIAPQVE
EVLVDCSGPMEEDRNEETAFVRKRDMLVQNLLKHQVRRSLVFCNSIPTCR
KVENALRRADRSGNRWQILAYHSAVNPADREKHLGIFSSRVERPLVMVCT
DRTSRGVDFDKANVEHVVLFDFPRDPSEYVRRVGRTGRAGRTGRVTALVL
GKQVGLARSIMEGNSKGARVHPVPN*
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mRNA from alignment at chr11:614002..616600+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G01870.1 ID=NO11G01870.1|Name=NO11G01870.1|organism=Nannochloropsis oceanica|type=mRNA|length=2599bp|location=Sequence derived from alignment at chr11:614002..616600+ (Nannochloropsis oceanica)
CAGCTTGTCTACCGGAAACAGATTTGTGATAATGACGAGGCCGGCATGGA CAGGGCAACAATGTAGAAGAAGACGCATCGGCGGCGCCCTCACTGCTGCC GCTGCAACTTGCCTATTGTGGGCCAACGGGACCGTAGCCTTTACAGGGCG TGCGTGCTTGCTATCCCGGAGCAAGTCGTCGTCGTCATCGTTGATGCTGC TGCGTAATTCGGCTGCCTTGACAACGGCGGCCCGCCGGGAGGGTGGGGAC GGGGATGGTGGTGGTGGTAGGGCGGGGGGAGGTGATCGACGCCGGACTGA TGGTGGGCCGCCGCGCTCGTATGGCGGCGGTAGTGCTGGTACCAAGCGTG GCGGTAGTGGAAGTGACAGTAGAGGAGGAGCCGGACGAGATCCGTCGCGG AAGGATGATTTTCTAGCCCCTGATTTTGACTTGGAGGACCTGTTGAAGGA CGATGGGGAAGGAGTTAACTGGAAACCAAAACAAGAACGACCTGACCCGC CTTCGCGTCGGAAAAGCAGCACGGGTGGAGCACCTGCAGATCGACGAGGG GGCTATGGAAGTTATGGAGGGAGTGCTGGGCCGCGCCCTCGTCCAGAAAG GGAAGGACGAAGTGTAAATTCGAACCCGAAGGAAGTGAGTGGGGAGGAGT ACCGTCAGAAGCGACGGCTGGAAGGAGCCCGTCGTCGGCCTGAGGGAAGG CCGCAAGCGAGGGGGGATCAGCAGACGCCGGTATGGAATAGGAGGGAGGC GGAGGAGGACTTTGGTAAGCGGGAATTCGAGTTTGAGGGAGAGGAAGGGC GGGATGACGAGGAGGAGGAGGAGTATGGCCTGGAGCCGATGGAGTACTAT GAGGAGCGTTTTGCTGGGGAGGCGTTTTTTGGCGGTGAGAACAATAACGA GGACGAGGAGGACGACGATGATGGCGGCAGAGGGAGAGGAAGGATGGGGA AGAGGGAGGCCGCGGCAAGGCTGGCGGACGATTTCTTCTTCAGTCGCAAG GCGTTTGATGAAATTGGAGCGAGCGCCGAGGCGCAGGCAGCCATGCAGTC TCTGGGAATCTCCCGCCCATCAAAGATTCAAAATATTGCTTATCCTCACG TATTGGCGGGCACCTCATGCATCCTTGCCGAGCAAACGGGGTCGGGGAAG ACGCTCGCTTACCTACTCCCCCTCCTTCAACGGCTGCGTCAGCTGGAGGC CGCCGCAACTGCAGCAGGCGAATCCCCGCGCGCTCCTCCTAAATCACCAC GGGTGGTTGTGTTGGCGCCGACGGCAGAGCTTGCTGCACAAGTGGCAACG GTTGCAAGGGCGTTGACGAAACATTTACCGTTGCGGGTGTGTTGTGTTAC GGGGGGGAAGAACCCGCGGACGCAGGGAGAGATGCTGAAAAGTGGGGTAG ATGTCTTGATTGGCACCCCTGGGAGGGTGCAATATCTGTTGGAGGAAGGC AAGGTATTGCTGGGGGGGATGCAGGCCTTAGTCCTTGATGAGGTGGACGT GATGTTTTTGGACGATTCGTTCGATCTTTCAGTGATTGGTGCTGCTGCTC CTGCTGCTACTCAATTCTTGTTTGTCACAGCGACCTTGCCCGTGGCGGTG GCGGATCAGATAAGCAAAGAGTTTCCAGGAGTTAAGAAGTTGTGGGGTCC GGGGCTGCATAAGATCGCGCCTCAGGTGGAGGAAGTGTTGGTTGATTGTA GCGGGCCAATGGAGGAGGATCGGAATGAGGAGACGGCATTCGTGCGGAAG AGGGTAAGACTGCGGGAAGACGATAAAAGGGAGGGGAGGGAGGATGTTTG TTTCTTCGTTGTATTCCCACGAGTCGTCGACGAAAAGGCGCGAATAGCCA CAAGAACTCATCCTTTCCTTCCTCGGCTACATCACCACAGGACATGCTTG TCCAGAACCTGCTTAAGCACCAAGTGAGGCGCTCCTTGGTGTTCTGCAAC TCCATCCCGACCTGTCGAAAAGTGGAAAATGCCTTGCGGAGGGCCGACCG ATCAGGGAACAGGTGGCAAATCCTGGCTTATCACTCCGCAGTGAACCCGG CGGACCGAGAGAAACATCTAGGTATTTTCTCTTCAAGAGTAGAGAGGCCC TTGGTGATGGTATGTACGGATAGAACATCGCGGGGCGTAGACTTTGATAA GGCAAATGTGGAGCACGTGGTGCTGTTTGATTTCCCGCGGGATCCCAGTG AGTATGTTCGGAGGGTTGGGAGGACGGGAAGGGCGGGAAGGACGGGGCGG GTGACGGCGTTGGTGTTGGGAAAACAGGTGGGCTTGGCCAGGTCGATTAT GGAGGGAAATAGTAAGGGGGCACGAGTGCATCCGGTGCCGAACTAAGTGA GGACGAGGGACGAGGGGGATAGGGGAAAGGGAGGAGAGACGATCTGAGAA AAAGATCCAAATTGAAGAATGGAGACTTGGAGAAGACGATGAAAAAGGAA AAACAATTGGGGAATAAAGAAAGGTATTTAAAAGAAGAAGAAGAAGATTA AAAAAGAAATGGAATTACGACGACGACGAGCACATGTCGGGGAGTTGGCT GGAAAGAAAGTGGGAGCGTATTCTCTACTTCGCATGAAAGTCTCGGGAA
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Coding sequence (CDS) from alignment at chr11:614002..616600+

>NO11G01870.1 ID=NO11G01870.1|Name=NO11G01870.1|organism=Nannochloropsis oceanica|type=CDS|length=2178bp|location=Sequence derived from alignment at chr11:614002..616600+ (Nannochloropsis oceanica)
ATGACGAGGCCGGCATGGACAGGGCAACAATGTAGAAGAAGACGCATCGG
CGGCGCCCTCACTGCTGCCGCTGCAACTTGCCTATTGTGGGCCAACGGGA
CCGTAGCCTTTACAGGGCGTGCGTGCTTGCTATCCCGGAGCAAGTCGTCG
TCGTCATCGTTGATGCTGCTGCGTAATTCGGCTGCCTTGACAACGGCGGC
CCGCCGGGAGGGTGGGGACGGGGATGGTGGTGGTGGTAGGGCGGGGGGAG
GTGATCGACGCCGGACTGATGGTGGGCCGCCGCGCTCGTATGGCGGCGGT
AGTGCTGGTACCAAGCGTGGCGGTAGTGGAAGTGACAGTAGAGGAGGAGC
CGGACGAGATCCGTCGCGGAAGGATGATTTTCTAGCCCCTGATTTTGACT
TGGAGGACCTGTTGAAGGACGATGGGGAAGGAGTTAACTGGAAACCAAAA
CAAGAACGACCTGACCCGCCTTCGCGTCGGAAAAGCAGCACGGGTGGAGC
ACCTGCAGATCGACGAGGGGGCTATGGAAGTTATGGAGGGAGTGCTGGGC
CGCGCCCTCGTCCAGAAAGGGAAGGACGAAGTGTAAATTCGAACCCGAAG
GAAGTGAGTGGGGAGGAGTACCGTCAGAAGCGACGGCTGGAAGGAGCCCG
TCGTCGGCCTGAGGGAAGGCCGCAAGCGAGGGGGGATCAGCAGACGCCGG
TATGGAATAGGAGGGAGGCGGAGGAGGACTTTGGTAAGCGGGAATTCGAG
TTTGAGGGAGAGGAAGGGCGGGATGACGAGGAGGAGGAGGAGTATGGCCT
GGAGCCGATGGAGTACTATGAGGAGCGTTTTGCTGGGGAGGCGTTTTTTG
GCGGTGAGAACAATAACGAGGACGAGGAGGACGACGATGATGGCGGCAGA
GGGAGAGGAAGGATGGGGAAGAGGGAGGCCGCGGCAAGGCTGGCGGACGA
TTTCTTCTTCAGTCGCAAGGCGTTTGATGAAATTGGAGCGAGCGCCGAGG
CGCAGGCAGCCATGCAGTCTCTGGGAATCTCCCGCCCATCAAAGATTCAA
AATATTGCTTATCCTCACGTATTGGCGGGCACCTCATGCATCCTTGCCGA
GCAAACGGGGTCGGGGAAGACGCTCGCTTACCTACTCCCCCTCCTTCAAC
GGCTGCGTCAGCTGGAGGCCGCCGCAACTGCAGCAGGCGAATCCCCGCGC
GCTCCTCCTAAATCACCACGGGTGGTTGTGTTGGCGCCGACGGCAGAGCT
TGCTGCACAAGTGGCAACGGTTGCAAGGGCGTTGACGAAACATTTACCGT
TGCGGGTGTGTTGTGTTACGGGGGGGAAGAACCCGCGGACGCAGGGAGAG
ATGCTGAAAAGTGGGGTAGATGTCTTGATTGGCACCCCTGGGAGGGTGCA
ATATCTGTTGGAGGAAGGCAAGGTATTGCTGGGGGGGATGCAGGCCTTAG
TCCTTGATGAGGTGGACGTGATGTTTTTGGACGATTCGTTCGATCTTTCA
GTGATTGGTGCTGCTGCTCCTGCTGCTACTCAATTCTTGTTTGTCACAGC
GACCTTGCCCGTGGCGGTGGCGGATCAGATAAGCAAAGAGTTTCCAGGAG
TTAAGAAGTTGTGGGGTCCGGGGCTGCATAAGATCGCGCCTCAGGTGGAG
GAAGTGTTGGTTGATTGTAGCGGGCCAATGGAGGAGGATCGGAATGAGGA
GACGGCATTCGTGCGGAAGAGGGACATGCTTGTCCAGAACCTGCTTAAGC
ACCAAGTGAGGCGCTCCTTGGTGTTCTGCAACTCCATCCCGACCTGTCGA
AAAGTGGAAAATGCCTTGCGGAGGGCCGACCGATCAGGGAACAGGTGGCA
AATCCTGGCTTATCACTCCGCAGTGAACCCGGCGGACCGAGAGAAACATC
TAGGTATTTTCTCTTCAAGAGTAGAGAGGCCCTTGGTGATGGTATGTACG
GATAGAACATCGCGGGGCGTAGACTTTGATAAGGCAAATGTGGAGCACGT
GGTGCTGTTTGATTTCCCGCGGGATCCCAGTGAGTATGTTCGGAGGGTTG
GGAGGACGGGAAGGGCGGGAAGGACGGGGCGGGTGACGGCGTTGGTGTTG
GGAAAACAGGTGGGCTTGGCCAGGTCGATTATGGAGGGAAATAGTAAGGG
GGCACGAGTGCATCCGGTGCCGAACTAA
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Synonyms
Publications