NO11G01870, NO11G01870 (gene) Nannochloropsis oceanica

Overview
NameNO11G01870
Unique NameNO11G01870
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2599
Alignment locationchr11:614002..616600 +

Link to JBrowse

Properties
Property NameValue
DescriptionDead-box atp-dependent rna helicase 50-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:614002..616600 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO:0016787hydrolase activity
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR014014RNA_helicase_DEAD_Q_motif
IPR011545DEAD/DEAH_box_helicase_dom
IPR001650Helicase_C
IPR014001Helicase_ATP-bd
Homology
BLAST of NO11G01870 vs. NCBI_GenBank
Match: EWM25042.1 (dead-box atp-dependent rna helicase 50-like protein [Nannochloropsis gaditana])

HSP 1 Score: 661.4 bits (1705), Expect = 3.300e-186
Identity = 351/415 (84.58%), Postives = 375/415 (90.36%), Query Frame = 0
Query:  311 AARLADDFFFSRKAFDEIGASAEAQAAMQSLGISRPSKIQNIAYPHVLAGTSCILAEQTGSGKTLAYLLPLLQRLRQLEAAATAAGESPRAXXXXXXVVVLAPTAELAAQVATVARALTKHLPLRVCCVTGGKNPRTQGEMLKSGVDVLIGTPGRVQYLLEEGKVLLGGMQALVLDEVDVMFLDDSFDLSVIGAAAPAATQFLFVTATLPVAVADQISKEFPGVKKLWGPGLHKIAPQVEEVLVDCSGPMEEDRNEETAFVRKRDMLVQNLLKHQVRRSLVFCNSIPTCRKVENALRRADRSGNRWQILAYHSAVNPADREKHLGIFSSRVERPLVMVCTDRTSRGVDFDKANVEHVVLFDFPRDPSEYVRXXXXXXXXXXXXXXTALVLGKQVGLARSIMEGNSKGARVHPVPN 726
            AARLAD FFFSRK F+EIGAS EA+AA+ S+GI+RPSK+Q IAYPH+L G+SCI+AEQTGSGKTLAYLLPLLQRLR LE      G   RA      VVVLAPTAELAAQVA+VARA+T+H+PLRVCCVTGGKNPRTQGEMLK GVDVLIGTPGRVQYLLEE KVLLG MQALVLDEVDVMFLDDSFDL+VIGAAAPA TQFLFVTATLPV VADQI++EFPGVKKLWGPGLHKIAPQVEEVLVDCSGP EE+RNEET FVRKRDMLVQNLLKH   RSLVFCNSIPTCRKVENALRRADR   RWQ+LAYHSAVNP DR+K+L IFSSRVERPL+MVCTDRTSRGVDFD A+V+HVVLFDFPRDPSEYV XXXXXXXXXXXXXX ALVLG+QVGLARSIMEGNSKGARVHPVPN
Sbjct:   39 AARLADTFFFSRKTFEEIGASPEARAALGSMGIARPSKVQTIAYPHILQGSSCIIAEQTGSGKTLAYLLPLLQRLRGLEGGGEGKGGLGRAPPKSPRVVVLAPTAELAAQVASVARAMTRHMPLRVCCVTGGKNPRTQGEMLKQGVDVLIGTPGRVQYLLEENKVLLGEMQALVLDEVDVMFLDDSFDLAVIGAAAPAHTQFLFVTATLPVPVADQIAREFPGVKKLWGPGLHKIAPQVEEVLVDCSGPWEEERNEETGFVRKRDMLVQNLLKHPAPRSLVFCNSIPTCRKVENALRRADRQEKRWQVLAYHSAVNPQDRQKNLDIFSSRVERPLIMVCTDRTSRGVDFDTADVQHVVLFDFPRDPSEYVXXXXXXXXXXXXXXXXALVLGRQVGLARSIMEGNSKGARVHPVPN 453          
BLAST of NO11G01870 vs. NCBI_GenBank
Match: CEM01514.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 417.9 bits (1073), Expect = 6.300e-113
Identity = 239/420 (56.90%), Postives = 297/420 (70.71%), Query Frame = 0
Query:  310 AAARLADDFFFSRKAFDEIGASAEAQAAMQSLGISRPSKIQNIAYPHVLAGTSCILAEQTGSGKTLAYLLPLLQRLRQLEAAATAAGESPRAXXXXXXVVVLAPTAELAAQVATVARALTKHLPLRVCCVTGGKNPRTQGEML-KSGVDVLIGTPGRVQYLLEEGKVLLGGMQALVLDEVDVMFLDDSFDLSVIGAAAPAATQFLFVTATLPVAVADQISKEFPGVKKLWGPGLHKIAPQVEEVLVDCSGPMEEDRNEETAFVRKRDMLVQNLLKHQVRRSLVFCNSIPTCRKVENALRRADRSGNRWQILAYHSAVNPADREKHLGIFSSRVER----PLVMVCTDRTSRGVDFDKANVEHVVLFDFPRDPSEYVRXXXXXXXXXXXXXXTALVLGKQVGLARSIMEGNSKGARVHPVP 725
            A++   D+ FFSRK F +IGAS E   AM   G  RPSKIQ ++Y  VL+G +C++A+QTGSGKTLAYL PLLQRLR  E A       PRA      VVVLAPT ELA+QV+ V + LT   P+R  CVTGG N R Q  M+ +SGVD+L+ TPGR++ +L+ GK+ L  + ALVLDEVDV+FLDD+F L  IG A   +TQF+FVTAT+P +V  QI +EFP ++++ GPGLH+IAP VEEVLVDCSGP +E +NE TAF RKR  L   L K  V R+L+FCNSI  CR+VENALRR DR   R+Q+L YHS +   D E+   IF++        P+V+V TD+ SRGVDFD+  V HV+LFDFPRDPSEYVR   XXXXXXXXXX T+LVLG+QV LAR +ME N +G R+H VP
Sbjct:   31 ASSSSDDELFFSRKQFADIGASDEMIEAMSIAGAKRPSKIQALSYRTVLSGKNCVVADQTGSGKTLAYLAPLLQRLRDEERAG-----KPRALPGSPRVVVLAPTTELASQVSRVLKKLTAVAPVRTACVTGGYNARDQMRMVERSGVDILVATPGRLRSMLQMGKLNLHQLSALVLDEVDVLFLDDTFLLQPIGEATAPSTQFVFVTATIPTSVFAQIKQEFPDLRRIMGPGLHRIAPGVEEVLVDCSGPKDEAKNEFTAFERKRKALAGQLDKVVVPRTLIFCNSIENCRRVENALRRLDRGRKRFQVLPYHSGI---DNERRREIFNAFTRENFLIPMVLVSTDQASRGVDFDQVEVGHVILFDFPRDPSEYVRRVGXXXXXXXXXXVTSLVLGRQVSLARELMEVNRRGERIHDVP 442          
BLAST of NO11G01870 vs. NCBI_GenBank
Match: CBJ31982.1 (DEAD box helicase [Ectocarpus siliculosus])

HSP 1 Score: 398.3 bits (1022), Expect = 5.200e-107
Identity = 215/407 (52.83%), Postives = 279/407 (68.55%), Query Frame = 0
Query:  317 DFFFSRKAFDEIGASAEAQAAMQSLGISRPSKIQNIAYPHVLAGTSCILAEQTGSGKTLAYLLPLLQRLRQLEAAATAAGESPRAXXXXXXVVVLAPTAELAAQVATVARALTKHLPLRVCCVTG--GKNPRTQGEMLKSGVDVLIGTPGRVQYLLEEGKVLLGGMQALVLDEVDVMFLDDSFDLSVIGAAAPAATQFLFVTATLPVAVADQISKEFPGVKKLWGPGLHKIAPQVEEVLVDCSGPMEEDRNEETAFVRKRDMLVQNLLKHQVRRSLVFCNSIPTCRKVENALRRADRSGNRWQILAYHSAVNPADREKHLGIF-SSRVERPLVMVCTDRTSRGVDFDKANVEHVVLFDFPRDPSEYVRXXXXXXXXXXXXXXTALVLGKQVGLARSIMEGNSKGARV 721
            + F+S K+  +IGAS  A +A++SLG+ RPSKIQ I+Y  +L G  C++A+QTGSGKTLAYL PL+QRLR LE  A   G   RA      V++LAPTAELA QV  VA+ L+  +P R CC TG  G+  +TQ ++L+ GVDVL+ TPGRV  LLE G + L   +A++LDEVDV+F+D++F L+ IG  AP  TQF+FVTATLP +V+D + +EFPG K L GPGLH++AP VEEVL+DCSGP  E RNEET   RKRD L+  L +    R+LVFCN+I  CR+VEN L RA R G +++ L YHSA++P     ++  F  S    P+VMVCTDR+SRG+DFD+A VEHV+L+DFPRDP EY+R              T L  G+QV L R IM GN +G R+
Sbjct:  207 EHFYSIKSLPDIGASDLAVSALKSLGVVRPSKIQAISYSAILTGDHCVVADQTGSGKTLAYLAPLVQRLR-LEELAEVHG---RARPGRPRVLILAPTAELAQQVYGVAQRLSGSVPFRSCCFTGGPGRTFKTQAKLLEEGVDVLVATPGRVATLLEAGVLNLEDCRAVILDEVDVLFMDETFQLAPIGTCAPEDTQFIFVTATLPQSVSDMLKEEFPGTKFLLGPGLHRVAPGVEEVLIDCSGPPGEPRNEETGLARKRDALLSQLERRMALRTLVFCNTIQGCRQVENMLSRASR-GGQFETLVYHSAIDPKQAASNMQQFMRSNALSPMVMVCTDRSSRGMDFDRAEVEHVLLYDFPRDPIEYMRRVGRTARAGRKGVVTVLAWGRQVPLVREIMAGNKRGKRL 608          
BLAST of NO11G01870 vs. NCBI_GenBank
Match: KDO46874.1 (hypothetical protein CISIN_1g005837mg [Citrus sinensis] >KDO46875.1 hypothetical protein CISIN_1g005837mg [Citrus sinensis])

HSP 1 Score: 355.9 bits (912), Expect = 2.900e-94
Identity = 201/419 (47.97%), Postives = 279/419 (66.59%), Query Frame = 0
Query:  315 ADDFFFSRKAFDEIGASAEAQAAMQSLGISRPSKIQNIAYPHVLAGTSCILAEQTGSGKTLAYLLPLLQRLRQ--LEAAATAAGESPRAXXXXXXVVVLAPTAELAAQVATVARALTK-HLPLRVCCVTGGKNPRTQGEMLKSGVDVLIGTPGRVQYLLEEGKVLLGGMQALVLDEVDVMFLDDSFDLSV--IGAAAPAATQFLFVTATLPVAVADQISKEFPGVKKLWGPGLHKIAPQVEEVLVDCSGPMEEDRNEETAFVRKRDMLVQNLLKHQVRRSLVFCNSIPTCRKVENALRRADRSGNRWQILAYHSAVNPADREKHLGIF--SSRVERPLVMVCTDRTSRGVDFDKANVEHVVLFDFPRDPSEYVRXXXXXXXXXXXXXXTAL-VLGKQVGLARSIMEGNSKGARVHPVPN 726
            AD  FFSRK+F E+G S     +++     RPS+IQ +A+P V+ G SCILA+Q+GSGKTLAYLLP++QRLRQ  L+  + +   SPR       VV+LAPTAELA+QV +  R+L+K  +P R   VTGG   +TQ E L+ GVDVLI TPGR  +L++EG + L  ++  +LDEVD++F D+ F++++  + +++P   Q+LFVTATLPV + +++ + FP  K + GPG+H+I+P +EE LVDCSG  E D+  ETAF+ K+  L+Q + K  V +++VFCN I TCRKVEN L+R DR   R ++L +H+A++   R  ++  F  S   E  L +VCTDR SRG+DF  A V+HVVLFDFPRDPSEYVR                + V+GKQV LA+ IME N KG  +H VP+
Sbjct:  260 ADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR-------VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDF--AGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPS 669          
BLAST of NO11G01870 vs. NCBI_GenBank
Match: XP_006478533.1 (PREDICTED: DEAD-box ATP-dependent RNA helicase 50 [Citrus sinensis])

HSP 1 Score: 354.0 bits (907), Expect = 1.100e-93
Identity = 200/419 (47.73%), Postives = 279/419 (66.59%), Query Frame = 0
Query:  315 ADDFFFSRKAFDEIGASAEAQAAMQSLGISRPSKIQNIAYPHVLAGTSCILAEQTGSGKTLAYLLPLLQRLRQ--LEAAATAAGESPRAXXXXXXVVVLAPTAELAAQVATVARALTK-HLPLRVCCVTGGKNPRTQGEMLKSGVDVLIGTPGRVQYLLEEGKVLLGGMQALVLDEVDVMFLDDSFDLSV--IGAAAPAATQFLFVTATLPVAVADQISKEFPGVKKLWGPGLHKIAPQVEEVLVDCSGPMEEDRNEETAFVRKRDMLVQNLLKHQVRRSLVFCNSIPTCRKVENALRRADRSGNRWQILAYHSAVNPADREKHLGIF--SSRVERPLVMVCTDRTSRGVDFDKANVEHVVLFDFPRDPSEYVRXXXXXXXXXXXXXXTAL-VLGKQVGLARSIMEGNSKGARVHPVPN 726
            A+  FFSRK+F E+G S     +++     RPS+IQ +A+P V+ G SCILA+Q+GSGKTLAYLLP++QRLRQ  L+  + +   SPR       VV+LAPTAELA+QV +  R+L+K  +P R   VTGG   +TQ E L+ GVDVLI TPGR  +L++EG + L  ++  +LDEVD++F D+ F++++  + +++P   Q+LFVTATLPV + +++ + FP  K + GPG+H+I+P +EE LVDCSG  E D+  ETAF+ K+  L+Q + K  V +++VFCN I TCRKVEN L+R DR   R ++L +H+A++   R  ++  F  S   E  L +VCTDR SRG+DF  A V+HVVLFDFPRDPSEYVR                + V+GKQV LA+ IME N KG  +H VP+
Sbjct:  264 ANGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR-------VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDF--AGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPS 673          
BLAST of NO11G01870 vs. NCBI_GenBank
Match: XP_006441939.1 (DEAD-box ATP-dependent RNA helicase 50 isoform X1 [Citrus clementina] >ESR55179.1 hypothetical protein CICLE_v10019165mg [Citrus clementina])

HSP 1 Score: 353.2 bits (905), Expect = 1.900e-93
Identity = 200/419 (47.73%), Postives = 278/419 (66.35%), Query Frame = 0
Query:  315 ADDFFFSRKAFDEIGASAEAQAAMQSLGISRPSKIQNIAYPHVLAGTSCILAEQTGSGKTLAYLLPLLQRLRQ--LEAAATAAGESPRAXXXXXXVVVLAPTAELAAQVATVARALTKH-LPLRVCCVTGGKNPRTQGEMLKSGVDVLIGTPGRVQYLLEEGKVLLGGMQALVLDEVDVMFLDDSFDLSV--IGAAAPAATQFLFVTATLPVAVADQISKEFPGVKKLWGPGLHKIAPQVEEVLVDCSGPMEEDRNEETAFVRKRDMLVQNLLKHQVRRSLVFCNSIPTCRKVENALRRADRSGNRWQILAYHSAVNPADREKHLGIF--SSRVERPLVMVCTDRTSRGVDFDKANVEHVVLFDFPRDPSEYVRXXXXXXXXXXXXXXTAL-VLGKQVGLARSIMEGNSKGARVHPVPN 726
            AD  FFSRK+F E+G S     +++      PS+IQ +A+P V+ G SCILA+Q+GSGKTLAYLLP++QRLRQ  L+  + +   SPR       VV+LAPTAELA+QV +  R+L+K  +P R   VTGG   +TQ E L+ GVDVLI TPGR  +L++EG + L  ++  +LDEVD++F D+ F++++  + +++P   Q+LFVTATLPV + +++ + FP  K + GPG+H+I+P +EE LVDCSG  E D+  ETAF+ K+  L+Q + K  V +++VFCN I TCRKVEN L+R DR   R ++L +H+A++   R  ++  F  S   E  L +VCTDR SRG+DF  A V+HVVLFDFPRDPSEYVR                + V+GKQV LA+ IME N KG  +H VP+
Sbjct:  260 ADGDFFSRKSFKELGCSDYMIESLKRQNFLCPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR-------VVILAPTAELASQVLSNCRSLSKFGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIETCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEACLFLVCTDRASRGIDF--AGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPS 669          
BLAST of NO11G01870 vs. NCBI_GenBank
Match: XP_020552097.1 (DEAD-box ATP-dependent RNA helicase 50 [Sesamum indicum])

HSP 1 Score: 351.7 bits (901), Expect = 5.500e-93
Identity = 194/419 (46.30%), Postives = 280/419 (66.83%), Query Frame = 0
Query:  315 ADDFFFSRKAFDEIGASAEAQAAMQSLGISRPSKIQNIAYPHVLAGTSCILAEQTGSGKTLAYLLPLLQRLRQ--LEAAATAAGESPRAXXXXXXVVVLAPTAELAAQVATVARALTK-HLPLRVCCVTGGKNPRTQGEMLKSGVDVLIGTPGRVQYLLEEGKVLLGGMQALVLDEVDVMFLDDSFDLSV--IGAAAPAATQFLFVTATLPVAVADQISKEFPGVKKLWGPGLHKIAPQVEEVLVDCSGPMEEDRNEETAFVRKRDMLVQNLLKHQVRRSLVFCNSIPTCRKVENALRRADRSGNRWQILAYHSAVNPADREKHLGIFSSRVERPLVM--VCTDRTSRGVDFDKANVEHVVLFDFPRDPSEYVRXXXXXXXXXXXXXXT-ALVLGKQVGLARSIMEGNSKGARVHPVPN 726
            A+  FFSRK+F E+G S     +++SL   RPS IQ +A+  VL G SC++A+Q+GSGKTLAYL+PL+QRLRQ  LE  + +A +SPR       VV+L PTAELA+QV ++ R+L+K  +P R    TGG   RTQ E L+ G+DVLI TPGR  +LL+EG + L  +++ +LDEVD+++ D+ F+L++  +  +AP   Q+LFVTATLPV + +++ + FP  + + GPG+H+ +P++EE+L+DCSG  E +R  +TAF+ K++ L+  + +  V++++VFCN I TCRKVENAL+R DR+  R ++L +H+A+    R  ++  F +     + M  VCTDR SRG+DF  A V+HVVLFDFPRDPSEYVR                   +GKQV LAR I+E N KG  +H VP+
Sbjct:  163 ANSDFFSRKSFKELGCSDYIIESLRSLQYVRPSHIQAMAFAPVLGGKSCVMADQSGSGKTLAYLVPLVQRLRQEELEGLSKSASQSPR-------VVILVPTAELASQVLSICRSLSKVGVPFRSMVATGGFRQRTQLENLRQGIDVLIATPGRFMFLLKEGFLQLTNLKSAILDEVDILYNDEDFELALQSLVNSAPVTAQYLFVTATLPVDIYNKVVEVFPDSEVIMGPGMHRTSPRLEEILIDCSGDEETERTPDTAFLNKKNALMHLVEESPVKKTIVFCNKIETCRKVENALKRFDRNEIRIKVLPFHAALEQESRLANIEAFRNFPPNNISMFLVCTDRASRGIDF--AGVDHVVLFDFPRDPSEYVRRVGRTARGAGGKGKAFVFAVGKQVSLARRIIERNQKGHPLHDVPS 572          
BLAST of NO11G01870 vs. NCBI_GenBank
Match: GAY56966.1 (hypothetical protein CUMW_175840 [Citrus unshiu])

HSP 1 Score: 351.7 bits (901), Expect = 5.500e-93
Identity = 199/419 (47.49%), Postives = 278/419 (66.35%), Query Frame = 0
Query:  315 ADDFFFSRKAFDEIGASAEAQAAMQSLGISRPSKIQNIAYPHVLAGTSCILAEQTGSGKTLAYLLPLLQRLRQ--LEAAATAAGESPRAXXXXXXVVVLAPTAELAAQVATVARALTKH-LPLRVCCVTGGKNPRTQGEMLKSGVDVLIGTPGRVQYLLEEGKVLLGGMQALVLDEVDVMFLDDSFDLSV--IGAAAPAATQFLFVTATLPVAVADQISKEFPGVKKLWGPGLHKIAPQVEEVLVDCSGPMEEDRNEETAFVRKRDMLVQNLLKHQVRRSLVFCNSIPTCRKVENALRRADRSGNRWQILAYHSAVNPADREKHLGIF--SSRVERPLVMVCTDRTSRGVDFDKANVEHVVLFDFPRDPSEYVRXXXXXXXXXXXXXXTAL-VLGKQVGLARSIMEGNSKGARVHPVPN 726
            AD  FFSRK+F E+G S     +++      PS+IQ +A+P V+ G SCILA+Q+GSGKTLAYLLP++QRLRQ  L+  + +   SPR       VV+LAPTAELA+QV +  R+L+K  +P R   VTGG   +TQ E L+ GVDVLI TPGR  +L++EG + L  ++  +LDEVD++F D+ F++++  + +++P   Q+LFVTATLPV + +++ + FP  + + GPG+H+I+P +EE LVDCSG  E D+  ETAF+ K+  L+Q + K  V +++VFCN I TCRKVEN L+R DR   R ++L +H+A++   R  ++  F  S   E  L +VCTDR SRG+DF  A V+HVVLFDFPRDPSEYVR                + V+GKQV LA+ IME N KG  +H VP+
Sbjct:  260 ADGDFFSRKSFKELGCSDYMIESLKRQNFLCPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR-------VVILAPTAELASQVLSNCRSLSKFGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCEVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIETCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEACLFLVCTDRASRGIDF--AGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPS 669          
BLAST of NO11G01870 vs. NCBI_GenBank
Match: GAV69112.1 (DEAD domain-containing protein/Helicase_C domain-containing protein [Cephalotus follicularis])

HSP 1 Score: 351.3 bits (900), Expect = 7.200e-93
Identity = 199/418 (47.61%), Postives = 278/418 (66.51%), Query Frame = 0
Query:  316 DDFFFSRKAFDEIGASAEAQAAMQSLGISRPSKIQNIAYPHVLAGTSCILAEQTGSGKTLAYLLPLLQRLRQ--LEAAATAAGESPRAXXXXXXVVVLAPTAELAAQVATVARALTK-HLPLRVCCVTGGKNPRTQGEMLKSGVDVLIGTPGRVQYLLEEGKVLLGGMQALVLDEVDVMFLDDSFDLSV--IGAAAPAATQFLFVTATLPVAVADQISKEFPGVKKLWGPGLHKIAPQVEEVLVDCSGPMEEDRNEETAFVRKRDMLVQNLLKHQVRRSLVFCNSIPTCRKVENALRRADRSGNRWQILAYHSAVNPADREKHLGIF--SSRVERPLVMVCTDRTSRGVDFDKANVEHVVLFDFPRDPSEYVRXXXXXXXXXXXXXXTAL-VLGKQVGLARSIMEGNSKGARVHPVPN 726
            D  FFSRK+F ++G +     +++     RP+ IQ +A+P V+ G SCI+A+Q+GSGKTLAYLLP++QRLRQ  L+  + ++ +SPR       VV+L PTAELA+QV +  R+++K  +P R   VTGG   RTQ E L+ GVDVLI TPGR+ YLL+EG + L  ++  VLDE+D+++ D+ F+ S+  +  ++P   Q+LFVTATLPV + +++ + FP  K + GPG+H+I+P +EEVLVDCSG +   +  +TAF+ K+  L+Q + K  V ++L+FCN I TCRKVEN L+R DR G R Q+  +H+AV    R +++  F  S   E  L +VCTDRTSRG+DF  A V+HVVLFDFPRDPSEYVR                + V+GKQV LAR IME N KG  +H VP+
Sbjct:  155 DAHFFSRKSFADLGCTQFMVDSLKHQLFLRPANIQAMAFPPVIEGKSCIIADQSGSGKTLAYLLPVIQRLRQEELQGLSISSSQSPR-------VVILLPTAELASQVFSNCRSMSKTGVPFRSMVVTGGFRQRTQLENLQLGVDVLIATPGRLMYLLKEGFLKLTNLRCAVLDEIDILYKDEDFEASLQSLINSSPVTAQYLFVTATLPVDIYNKLVEVFPDCKVIMGPGMHRISPGLEEVLVDCSGDVTV-KTPDTAFINKKSALLQLVEKTPVPKTLIFCNKIETCRKVENVLKRFDRKGTRLQVFPFHAAVAQETRLENMKEFTKSRPEEESLFLVCTDRTSRGIDF--AGVDHVVLFDFPRDPSEYVRRVGRTARGAGGKGKAFIFVVGKQVSLARKIMERNQKGHPLHDVPS 562          
BLAST of NO11G01870 vs. NCBI_GenBank
Match: XP_007137331.1 (hypothetical protein PHAVU_009G118200g [Phaseolus vulgaris] >ESW09325.1 hypothetical protein PHAVU_009G118200g [Phaseolus vulgaris])

HSP 1 Score: 349.4 bits (895), Expect = 2.800e-92
Identity = 193/423 (45.63%), Postives = 281/423 (66.43%), Query Frame = 0
Query:  311 AARLADDFFFSRKAFDEIGASAEAQAAMQSLGISRPSKIQNIAYPHVLAGTSCILAEQTGSGKTLAYLLPLLQRLRQ--LEAAATAAGESPRAXXXXXXVVVLAPTAELAAQVATVARALTKH-LPLRVCCVTGGKNPRTQGEMLKSGVDVLIGTPGRVQYLLEEGKVLLGGMQALVLDEVDVMFLDDSFDLSV--IGAAAPAATQFLFVTATLPVAVADQISKEFPGVKKLWGPGLHKIAPQVEEVLVDCSGPMEEDRNEETAFVRKRDMLVQNLLKHQVRRSLVFCNSIPTCRKVENALRRADRSGNRWQILAYHSAVNPADREKHLGIFSSRVERPL--VMVCTDRTSRGVDFDKANVEHVVLFDFPRDPSEYVRXXXXXXXXXXXXXXTAL-VLGKQVGLARSIMEGNSKGARVHPVPN 726
            A    D  FFS K+F E+G +     ++Q + ++RPS +Q +A+  VL+G +C++A+Q+GSGKTLAYL+P++QR+RQ  LE  + ++ ++PR       V+VLAPTAELA+QV    R+L+K  +P +   VTGG   RTQ E L+ GVDVLI TPGR  YL+ EG + L  ++  VLDEVD++F D+ F++++  + +++P  TQ+LFVTATLP  V  ++ + FP  + + GPG+H+I+ ++EE+LVDCSG  E+++  +TAF+ K+  LVQ + +  V R++VFCN I TCRKVEN+L+R DR GNR Q+L +H+A+    R   +  F+    + +   MVCTDR SRG+DF  A V+HV+LFDFPRDPSEYVR                + V+GKQV LA  IME + KG  +H VP+
Sbjct:  137 AKTTTDTNFFSLKSFKEVGCADYILQSLQKIFLTRPSHVQAMAFAPVLSGKTCVIADQSGSGKTLAYLVPIIQRVRQEELEGRSQSSSQAPR-------VLVLAPTAELASQVLDNCRSLSKSGVPFKSMVVTGGFRQRTQLESLQQGVDVLIATPGRFLYLMNEGFLQLTNLRCAVLDEVDILFGDEDFEVALQRLISSSPVDTQYLFVTATLPKNVFTKLVEVFPDCEMIMGPGMHRISSRLEEILVDCSGEDEQEKTPDTAFLNKKTALVQLVEESPVPRTIVFCNKIETCRKVENSLKRFDRKGNRMQVLPFHAAMTQESRLASMAEFTRSPSQGVSQFMVCTDRASRGIDF--AGVDHVILFDFPRDPSEYVRRVGRTARGAKGVGKAFIFVVGKQVSLASKIMERSRKGHPLHDVPS 550          
The following BLAST results are available for this feature:
BLAST of NO11G01870 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25042.13.300e-18684.58dead-box atp-dependent rna helicase 50-like protei... [more]
CEM01514.16.300e-11356.90unnamed protein product [Vitrella brassicaformis C... [more]
CBJ31982.15.200e-10752.83DEAD box helicase [Ectocarpus siliculosus][more]
KDO46874.12.900e-9447.97hypothetical protein CISIN_1g005837mg [Citrus sine... [more]
XP_006478533.11.100e-9347.73PREDICTED: DEAD-box ATP-dependent RNA helicase 50 ... [more]
XP_006441939.11.900e-9347.73DEAD-box ATP-dependent RNA helicase 50 isoform X1 ... [more]
XP_020552097.15.500e-9346.30DEAD-box ATP-dependent RNA helicase 50 [Sesamum in... [more]
GAY56966.15.500e-9347.49hypothetical protein CUMW_175840 [Citrus unshiu][more]
GAV69112.17.200e-9347.61DEAD domain-containing protein/Helicase_C domain-c... [more]
XP_007137331.12.800e-9245.63hypothetical protein PHAVU_009G118200g [Phaseolus ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002075NSK002075Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G01870.1NO11G01870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591319gene_5075Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100049g5gene5470Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G01870.1NO11G01870.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G01870 ID=NO11G01870|Name=NO11G01870|organism=Nannochloropsis oceanica|type=gene|length=2599bp
CAGCTTGTCTACCGGAAACAGATTTGTGATAATGACGAGGCCGGCATGGA
CAGGGCAACAATGTAGAAGAAGACGCATCGGCGGCGCCCTCACTGCTGCC
GCTGCAACTTGCCTATTGTGGGCCAACGGGACCGTAGCCTTTACAGGGCG
TGCGTGCTTGCTATCCCGGAGCAAGTCGTCGTCGTCATCGTTGATGCTGC
TGCGTAATTCGGCTGCCTTGACAACGGCGGCCCGCCGGGAGGGTGGGGAC
GGGGATGGTGGTGGTGGTAGGGCGGGGGGAGGTGATCGACGCCGGACTGA
TGGTGGGCCGCCGCGCTCGTATGGCGGCGGTAGTGCTGGTACCAAGCGTG
GCGGTAGTGGAAGTGACAGTAGAGGAGGAGCCGGACGAGATCCGTCGCGG
AAGGATGATTTTCTAGCCCCTGATTTTGACTTGGAGGACCTGTTGAAGGA
CGATGGGGAAGGAGTTAACTGGAAACCAAAACAAGAACGACCTGACCCGC
CTTCGCGTCGGAAAAGCAGCACGGGTGGAGCACCTGCAGATCGACGAGGG
GGCTATGGAAGTTATGGAGGGAGTGCTGGGCCGCGCCCTCGTCCAGAAAG
GGAAGGACGAAGTGTAAATTCGAACCCGAAGGAAGTGAGTGGGGAGGAGT
ACCGTCAGAAGCGACGGCTGGAAGGAGCCCGTCGTCGGCCTGAGGGAAGG
CCGCAAGCGAGGGGGGATCAGCAGACGCCGGTATGGAATAGGAGGGAGGC
GGAGGAGGACTTTGGTAAGCGGGAATTCGAGTTTGAGGGAGAGGAAGGGC
GGGATGACGAGGAGGAGGAGGAGTATGGCCTGGAGCCGATGGAGTACTAT
GAGGAGCGTTTTGCTGGGGAGGCGTTTTTTGGCGGTGAGAACAATAACGA
GGACGAGGAGGACGACGATGATGGCGGCAGAGGGAGAGGAAGGATGGGGA
AGAGGGAGGCCGCGGCAAGGCTGGCGGACGATTTCTTCTTCAGTCGCAAG
GCGTTTGATGAAATTGGAGCGAGCGCCGAGGCGCAGGCAGCCATGCAGTC
TCTGGGAATCTCCCGCCCATCAAAGATTCAAAATATTGCTTATCCTCACG
TATTGGCGGGCACCTCATGCATCCTTGCCGAGCAAACGGGGTCGGGGAAG
ACGCTCGCTTACCTACTCCCCCTCCTTCAACGGCTGCGTCAGCTGGAGGC
CGCCGCAACTGCAGCAGGCGAATCCCCGCGCGCTCCTCCTAAATCACCAC
GGGTGGTTGTGTTGGCGCCGACGGCAGAGCTTGCTGCACAAGTGGCAACG
GTTGCAAGGGCGTTGACGAAACATTTACCGTTGCGGGTGTGTTGTGTTAC
GGGGGGGAAGAACCCGCGGACGCAGGGAGAGATGCTGAAAAGTGGGGTAG
ATGTCTTGATTGGCACCCCTGGGAGGGTGCAATATCTGTTGGAGGAAGGC
AAGGTATTGCTGGGGGGGATGCAGGCCTTAGTCCTTGATGAGGTGGACGT
GATGTTTTTGGACGATTCGTTCGATCTTTCAGTGATTGGTGCTGCTGCTC
CTGCTGCTACTCAATTCTTGTTTGTCACAGCGACCTTGCCCGTGGCGGTG
GCGGATCAGATAAGCAAAGAGTTTCCAGGAGTTAAGAAGTTGTGGGGTCC
GGGGCTGCATAAGATCGCGCCTCAGGTGGAGGAAGTGTTGGTTGATTGTA
GCGGGCCAATGGAGGAGGATCGGAATGAGGAGACGGCATTCGTGCGGAAG
AGGgtaagactgcgggaagacgataaaagggaggggagggaggatgtttg
tttcttcgttgtattcccacgagtcgtcgacgaaaaggcgcgaatagcca
caagaactcatcctttccttcctcggctacatcaccacagGACATGCTTG
TCCAGAACCTGCTTAAGCACCAAGTGAGGCGCTCCTTGGTGTTCTGCAAC
TCCATCCCGACCTGTCGAAAAGTGGAAAATGCCTTGCGGAGGGCCGACCG
ATCAGGGAACAGGTGGCAAATCCTGGCTTATCACTCCGCAGTGAACCCGG
CGGACCGAGAGAAACATCTAGGTATTTTCTCTTCAAGAGTAGAGAGGCCC
TTGGTGATGGTATGTACGGATAGAACATCGCGGGGCGTAGACTTTGATAA
GGCAAATGTGGAGCACGTGGTGCTGTTTGATTTCCCGCGGGATCCCAGTG
AGTATGTTCGGAGGGTTGGGAGGACGGGAAGGGCGGGAAGGACGGGGCGG
GTGACGGCGTTGGTGTTGGGAAAACAGGTGGGCTTGGCCAGGTCGATTAT
GGAGGGAAATAGTAAGGGGGCACGAGTGCATCCGGTGCCGAACTAAGTGA
GGACGAGGGACGAGGGGGATAGGGGAAAGGGAGGAGAGACGATCTGAGAA
AAAGATCCAAATTGAAGAATGGAGACTTGGAGAAGACGATGAAAAAGGAA
AAACAATTGGGGAATAAAGAAAGGTATTTAAAAGAAGAAGAAGAAGATTA
AAAAAGAAATGGAATTACGACGACGACGAGCACATGTCGGGGAGTTGGCT
GGAAAGAAAGTGGGAGCGTATTCTCTACTTCGCATGAAAGTCTCGGGAA
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protein sequence of NO11G01870.1

>NO11G01870.1-protein ID=NO11G01870.1-protein|Name=NO11G01870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=726bp
MTRPAWTGQQCRRRRIGGALTAAAATCLLWANGTVAFTGRACLLSRSKSS
SSSLMLLRNSAALTTAARREGGDGDGGGGRAGGGDRRRTDGGPPRSYGGG
SAGTKRGGSGSDSRGGAGRDPSRKDDFLAPDFDLEDLLKDDGEGVNWKPK
QERPDPPSRRKSSTGGAPADRRGGYGSYGGSAGPRPRPEREGRSVNSNPK
EVSGEEYRQKRRLEGARRRPEGRPQARGDQQTPVWNRREAEEDFGKREFE
FEGEEGRDDEEEEEYGLEPMEYYEERFAGEAFFGGENNNEDEEDDDDGGR
GRGRMGKREAAARLADDFFFSRKAFDEIGASAEAQAAMQSLGISRPSKIQ
NIAYPHVLAGTSCILAEQTGSGKTLAYLLPLLQRLRQLEAAATAAGESPR
APPKSPRVVVLAPTAELAAQVATVARALTKHLPLRVCCVTGGKNPRTQGE
MLKSGVDVLIGTPGRVQYLLEEGKVLLGGMQALVLDEVDVMFLDDSFDLS
VIGAAAPAATQFLFVTATLPVAVADQISKEFPGVKKLWGPGLHKIAPQVE
EVLVDCSGPMEEDRNEETAFVRKRDMLVQNLLKHQVRRSLVFCNSIPTCR
KVENALRRADRSGNRWQILAYHSAVNPADREKHLGIFSSRVERPLVMVCT
DRTSRGVDFDKANVEHVVLFDFPRDPSEYVRRVGRTGRAGRTGRVTALVL
GKQVGLARSIMEGNSKGARVHPVPN*
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Synonyms
Publications