NO11G01810, NO11G01810 (gene) Nannochloropsis oceanica

Overview
NameNO11G01810
Unique NameNO11G01810
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1354
Alignment locationchr11:597658..599011 -

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Properties
Property NameValue
DescriptionProteasome maturation factor ump1 family protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:597658..599011 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0043248proteasome assembly
GO:0016043cellular component organization
Vocabulary: INTERPRO
TermDefinition
IPR008012UMP1
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Homology
BLAST of NO11G01810 vs. NCBI_GenBank
Match: XP_009516025.1 (hypothetical protein PHYSODRAFT_353577 [Phytophthora sojae] >EGZ28750.1 hypothetical protein PHYSODRAFT_353577 [Phytophthora sojae])

HSP 1 Score: 100.1 bits (248), Expect = 5.300e-18
Identity = 52/126 (41.27%), Postives = 77/126 (61.11%), Query Frame = 0
Query:    8 ALPVLKEPVDQMREGIKAGGFQSEATAP-HPVQAFQATRKEREFSARLDTIARLYGVAAAMRMKTEADILSQICRAPGLPSSFVGLETVLGTDETVEFEDVLNDPQERPDLPMVSVHEKMEARLGL 133
            +LP+++ P D +R G  +    SE   P H VQ  Q T ++  +  ++ T+ ++YG AAAMR++TE  +L Q  R PGLPSS  G++T+ G DE ++F D LNDP E P+     VHE ME +L +
Sbjct:    5 SLPLVRAPPDALRFGFYSA---SEDVRPVHEVQRLQTTHRQSNWELKMATVEQVYGKAAAMRLRTEKAVLEQFTRLPGLPSSHAGVDTLTGEDEQIDFTDFLNDPNEHPE-NTFRVHEAMEVKLSI 126          
BLAST of NO11G01810 vs. NCBI_GenBank
Match: GAX99325.1 (Hypothetical protein PINS_007145 [Pythium insidiosum] >GAX94809.1 Hypothetical protein PINS_002688 [Pythium insidiosum])

HSP 1 Score: 100.1 bits (248), Expect = 5.300e-18
Identity = 48/125 (38.40%), Postives = 74/125 (59.20%), Query Frame = 0
Query:    8 ALPVLKEPVDQMREGIKAGGFQSEATAPHPVQAFQATRKEREFSARLDTIARLYGVAAAMRMKTEADILSQICRAPGLPSSFVGLETVLGTDETVEFEDVLNDPQERPDLPMVSVHEKMEARLGL 133
            +LP+++ P D +R G  +    ++    HPVQ  Q   +   +  ++ T+ ++YG  AAMR++TE  ++ Q  R PGLPSS VGL+T+ G DE + F D LNDP E P+     VH+ ME +L +
Sbjct:    5 SLPLVRAPPDALRHGFYSA--SADVRPVHPVQQLQTMHRRNTWELKMATVEQIYGKGAAMRLRTEKAVMEQFARLPGLPSSRVGLDTITGADEEITFNDFLNDPTEHPE-HSFRVHDAMEVKLAI 126          
BLAST of NO11G01810 vs. NCBI_GenBank
Match: XP_008607187.1 (hypothetical protein SDRG_03334 [Saprolegnia diclina VS20] >EQC39126.1 hypothetical protein SDRG_03334 [Saprolegnia diclina VS20])

HSP 1 Score: 98.6 bits (244), Expect = 1.600e-17
Identity = 50/125 (40.00%), Postives = 81/125 (64.80%), Query Frame = 0
Query:    8 ALPVLKEPVDQMREGIKAGGFQSEATAPHPVQAFQATRKEREFSARLDTIARLYGVAAAMRMKTEADILSQICRAPGLPSSFVGLETVLGTDETVEFEDVLNDPQERPDLPMVSVHEKMEARLGL 133
            +LP+L+   D +R G +      +A   H VQ  +  R+   F A+++++ ++YG AAAMR++TE  +L Q  R PGLPSS VGL+T++G D+ ++F D+LN+PQE P++    VH+ ME +L +
Sbjct:    5 SLPLLRAGPDVLRVGWQRA--DQDARPVHEVQRLEMHRRVHGFEAKMNSVEQIYGKAAAMRLRTEKIMLEQHVRLPGLPSSRVGLDTLMGNDDILDFADILNEPQENPEVHF-RVHDAMEVKLAI 126          
BLAST of NO11G01810 vs. NCBI_GenBank
Match: CCI43440.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 91.7 bits (226), Expect = 1.900e-15
Identity = 47/125 (37.60%), Postives = 72/125 (57.60%), Query Frame = 0
Query:    8 ALPVLKEPVDQMREGIKAGGFQSEATAPHPVQAFQATRKEREFSARLDTIARLYGVAAAMRMKTEADILSQICRAPGLPSSFVGLETVLGTDETVEFEDVLNDPQERPDLPMVSVHEKMEARLGL 133
            ++P+L+   D +R G       ++    HPVQ  QA   +  +  ++ T+ ++YG AAAMR++TE  +L Q  R PGLPSS  G++T+ G DE V+ ED+LND  +        VHE +E +L L
Sbjct:    5 SIPLLRAAPDALRHGFTKAA--ADVRPVHPVQQLQAHNHDMNWELKMCTVEQVYGKAAAMRLRTEKAVLEQFKRLPGLPSSNAGIDTITGMDEQVDLEDILNDATDH-SFEHFKVHEAIEVKLAL 126          
BLAST of NO11G01810 vs. NCBI_GenBank
Match: CCA14153.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 91.3 bits (225), Expect = 2.500e-15
Identity = 47/125 (37.60%), Postives = 71/125 (56.80%), Query Frame = 0
Query:    8 ALPVLKEPVDQMREGIKAGGFQSEATAPHPVQAFQATRKEREFSARLDTIARLYGVAAAMRMKTEADILSQICRAPGLPSSFVGLETVLGTDETVEFEDVLNDPQERPDLPMVSVHEKMEARLGL 133
            ++P+L+   D +R G       +     HPVQ  QA   E  +  ++ T+ ++YG AA+MR++TE  +L Q  R PGLPSS  G++T+ G DE V+ ED+LND  +        VHE +E +L L
Sbjct:    5 SIPLLRAAPDALRHGFTKAA--TSVRPVHPVQQLQAHNHEMNWELKMATVEQVYGKAASMRLRTEKAVLEQFKRLPGLPSSNAGIDTITGMDEQVDLEDILNDANDH-SYEHFKVHEAIEVKLAL 126          
BLAST of NO11G01810 vs. NCBI_GenBank
Match: POM57969.1 (hypothetical protein PHPALM_37447 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 91.3 bits (225), Expect = 2.500e-15
Identity = 51/126 (40.48%), Postives = 73/126 (57.94%), Query Frame = 0
Query:    8 ALPVLKEPVDQMREGIKAGGFQSEATAP-HPVQAFQATRKEREFSARLDTIARLYGVAAAMRMKTEADILSQICRAPGLPSSFVGLETVLGTDETVEFEDVLNDPQERPDLPMVSVHEKMEARLGL 133
            +LP+++ P D +R G  +    SE   P H VQ  Q T ++  +  ++ T+ ++YG  AAMR++TE        R PGLPSS  GL+T+ G DE +EF D LNDP E P+     VHE ME +L +
Sbjct:    5 SLPLVRAPPDALRFGFYSA---SEDVRPVHEVQRLQTTHRQSNWELKMATVEQVYGKGAAMRLRTEK------ARLPGLPSSHAGLDTLTGADEQIEFTDFLNDPDEHPE-NTFRVHEAMEVKLSI 120          
BLAST of NO11G01810 vs. NCBI_GenBank
Match: PIN12790.1 (Proteasome maturation factor [Handroanthus impetiginosus])

HSP 1 Score: 88.6 bits (218), Expect = 1.600e-14
Identity = 49/125 (39.20%), Postives = 72/125 (57.60%), Query Frame = 0
Query:    9 LPVLKEPVDQMREGIKAGGFQSEATAPHPVQAFQATRKEREFSARLDTIARLYGVAAAMRMKTEADILSQICRAPG-LPSSFVGLETVLGTDETVEFEDVLNDPQERPDLPMVSVHEKMEARLGL 133
            +P+ + P D +R GI   G +S+   PHP+++   + K R+   +       YG A  M+M+ +  ILS+  R PG +PSSFVGLE + GT E+  FED LNDP++      + +H  ME RLGL
Sbjct:    7 IPLGERPEDPLRYGIH--GVKSDIIEPHPLESAYRSTKVRQEEMKKKIWMNTYGAAFPMKMELDRQILSKFQRPPGVIPSSFVGLEALTGTLESFAFEDYLNDPKDSESFCPIDMHHGMEVRLGL 129          
BLAST of NO11G01810 vs. NCBI_GenBank
Match: XP_002508826.1 (predicted protein [Micromonas commoda] >ACO70084.1 predicted protein [Micromonas commoda])

HSP 1 Score: 88.2 bits (217), Expect = 2.100e-14
Identity = 49/124 (39.52%), Postives = 64/124 (51.61%), Query Frame = 0
Query:    9 LPVLKEPVDQMREGIKAGGFQSEATAPHPVQAFQATRKEREFSARLDTIARLYGVAAAMRMKTEADILSQICRAPGLPSSFVGLETVLGTDETVEFEDVLNDPQERPDLPMVSVHEKMEARLGL 133
            +PV++EP D MR G+            HPVQ  Q         A+   +A  YG+A   +M  E  ILS+  R PGLPSS +GLE + G  +   FE  L+ P ERP+ P   +H  ME RLGL
Sbjct:   11 MPVMREPYDIMRNGLPGAKAAVTHLGKHPVQLIQDNGPTDTLRAKHAMLANTYGIAMPAKMDIECQILSKCRRLPGLPSSRLGLEIMTGDVDRFGFESYLDRPDERPEAPRGDLHGVMENRLGL 134          
BLAST of NO11G01810 vs. NCBI_GenBank
Match: GBG34447.1 (Proteasome maturation protein [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 87.8 bits (216), Expect = 2.700e-14
Identity = 50/124 (40.32%), Postives = 70/124 (56.45%), Query Frame = 0
Query:    9 LPVLKEPVDQMREGIKAGGFQSEATAPHPVQAFQATRKEREFSARLDTIARLYGVAAAMRMKTEADILSQICRAPGLPSSFVGLETVLGTDETVEFEDVLNDPQERPDLPMVSVHEKMEARLGL 133
            L VL  P D MREG+ +    S+   PHPV+  Q  R+ RE  +R+  +    G+AAAMR + +  + SQ  R PGL SSF GL++  G D T+ FED L +P E     + + HE ME +L +
Sbjct:    7 LQVLATPHDSMREGLPSA--VSDLAPPHPVEQMQKQRRAREMQSRVRDLTAQQGLAAAMRYQADHRLYSQFHRLPGLESSFAGLQSYTGADSTLSFEDWLGEP-ELSTQYLCNFHETMEHKLNM 127          
BLAST of NO11G01810 vs. NCBI_GenBank
Match: XP_024578642.1 (Proteasome maturation factor [Plasmopara halstedii] >CEG42273.1 Proteasome maturation factor [Plasmopara halstedii])

HSP 1 Score: 85.9 bits (211), Expect = 1.000e-13
Identity = 42/108 (38.89%), Postives = 63/108 (58.33%), Query Frame = 0
Query:    9 LPVLKEPVDQMREGIKAGGFQSEATAPHPVQAFQATRKEREFSARLDTIARLYGVAAAMRMKTEADILSQICRAPGLPSSFVGLETVLGTDETVEFEDVLNDPQERPD 117
            LP+++ P D +R      GF S +    P+   Q  +    +  ++ T+ ++YG AAAMR++TE  I  Q  R PGLPSS  GL+T+ G D+ ++F D LNDP E P+
Sbjct:    6 LPLIRAPPDALRY-----GFYSASEDVRPIHEVQRLQTLSNWEIKMSTVEQVYGKAAAMRLRTEKAIFEQFTRLPGLPSSHAGLDTLTGADDQIDFADFLNDPNEHPE 108          
The following BLAST results are available for this feature:
BLAST of NO11G01810 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_009516025.15.300e-1841.27hypothetical protein PHYSODRAFT_353577 [Phytophtho... [more]
GAX99325.15.300e-1838.40Hypothetical protein PINS_007145 [Pythium insidios... [more]
XP_008607187.11.600e-1740.00hypothetical protein SDRG_03334 [Saprolegnia dicli... [more]
CCI43440.11.900e-1537.60unnamed protein product [Albugo candida][more]
CCA14153.12.500e-1537.60conserved hypothetical protein [Albugo laibachii N... [more]
POM57969.12.500e-1540.48hypothetical protein PHPALM_37447 [Phytophthora pa... [more]
PIN12790.11.600e-1439.20Proteasome maturation factor [Handroanthus impetig... [more]
XP_002508826.12.100e-1439.52predicted protein [Micromonas commoda] >ACO70084.1... [more]
GBG34447.12.700e-1440.32Proteasome maturation protein [Aurantiochytrium sp... [more]
XP_024578642.11.000e-1338.89Proteasome maturation factor [Plasmopara halstedii... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002082NSK002082Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G01810.1NO11G01810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591299gene_5068Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100049g12gene5464Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G01810.1NO11G01810.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G01810 ID=NO11G01810|Name=NO11G01810|organism=Nannochloropsis oceanica|type=gene|length=1354bp
AGGTGGAGATTGGGGTGGGTACTGCGTGTGTGGGTTTGTGTATGAGGAAG
TGACTCAATCTCTTGCTTGCTTCTGTTGTGCTTGCACCATCACAATGATG
GGCGAGGCCGGGCTCCGACAAAGGAGAAAAGGTTCTCATCATCAGACAAC
TCACGCAAACAATAAAATCGCAGCACCACCGCGTCCACCCCTCATCTACG
TGCCCTGAGAATAAGAACTCACTCGGCCTCCTTGCGGCTTCTGGAAAGGG
AACTGAACTGAGGTGGTTCCATCGGGGCGACCCTCAATCATCGAAAACAC
CATCGCCGATTCCTATATCACAGGAGCGCAGCGCCGAACGACGAAGAAGC
AGAGACAATTTCTCACGACTTCACCTGCACAACATTCATCCACCACGTAG
GCAAGTCCATCAGTCTTCATTCGATACCATGTCATTCGAGATGGATCTGG
CACTGCCCGTGCTCAAGGAGCCTGTTGACCAGATGCGTGAGGGTATCAAG
GCCGGCGGCTTTCAAAGCGAGGCGACCGCGCCGCATCCGGTGCAAGCTTT
CCAGGCTACGgtacgtttgtatgcatcgagaggaggagggacatacgcag
gaaggggataggcaagctcgtctttggcgccgtggtggtgatttgctctc
ggggtgggagtccatgatgcttctgtattggtgctgtactcattcggcgg
gccatgtgcctgctgcgagcccagccttcttcactttacatcgcccgccc
cgatgttgagcaaatatgcgcacctatacaagcgttgctctacaggatag
ccttccaattatatttgtgctcggtccctctgttcttctcccgttaccgc
aacccttccccttcatcgtctgtgcttccctccctctttttcctcttacc
gcatcctcacccaccatgccatcccctttcctctaactaacagCGCAAAG
AGCGGGAATTTAGCGCTCGCCTTGACACGATCGCTCGCCTGTATGGCGTG
GCGGCTGCGATGCGCATGAAGACCGAAGCGGACATTTTGAGCCAGATTTG
CCGTGCCCCTGGCTTGCCTTCGTCGTTTGTGGGGTTGGAAACTGTGTTGG
GTACTGACGAGACGGTTGAATTCGAGGATGTATTGAATGACCCGCAAGAG
CGACCGGATCTGCCGATGGTGTCGGTGCATGAGAAGATGGAGGCCAGGTT
GGGGTTGTAGGGCAGGAGGGAGGAAGGGAGGAAGATCAAGGGGGAGTTGA
TCGCGGTGGGTTGGGGCGATCGAGGAAGCGGGAAAGTGGGCAAAAATGGG
AAGGTGGAAGGAGTAGGGGAAGAAAAGGGAAAATGTTGTCATCCAAGCTC
CTTC
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protein sequence of NO11G01810.1

>NO11G01810.1-protein ID=NO11G01810.1-protein|Name=NO11G01810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=133bp
MSFEMDLALPVLKEPVDQMREGIKAGGFQSEATAPHPVQAFQATRKEREF
SARLDTIARLYGVAAAMRMKTEADILSQICRAPGLPSSFVGLETVLGTDE
TVEFEDVLNDPQERPDLPMVSVHEKMEARLGL*
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Synonyms
Publications