NO11G01810.1, NO11G01810.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G01810.1
Unique NameNO11G01810.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length971
Alignment locationchr11:597658..599011 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:597658..599011 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO11G01810.1 vs.
Match: EWM25028.1 (proteasome maturation factor ump1 family protein [Nannochloropsis gaditana])

HSP 1 Score: 237.3 bits (604), Expect = 2.800e-59
Identity = 113/132 (85.61%), Postives = 126/132 (95.45%), Query Frame = 0
Query:    1 MSFEMDLALPVLKEPVDQMREGIKAGGFQSEATAPHPVQAFQATRKEREFSARLDTIARLYGVAAAMRMKTEADILSQICRAPGLPSSFVGLETVLGTDETVEFEDVLNDPQERPDLPMVSVHEKMEARLGL 133
            MSFE+DLALP+LKEPVDQMREG+KAGGF+SEA APHPVQAFQATRKE EF ARLDTIARLYG+AAAMR+KTE DILS++CRAPGLPSS VGLETVLGTDET+EFEDVLNDPQERPD+P++ VHE+MEARLGL
Sbjct:    1 MSFELDLALPLLKEPVDQMREGLKAGGFRSEAVAPHPVQAFQATRKEAEFQARLDTIARLYGIAAAMRLKTERDILSRVCRAPGLPSSMVGLETVLGTDETIEFEDVLNDPQERPDMPLIPVHERMEARLGL 132          
The following BLAST results are available for this feature:
BLAST of NO11G01810.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25028.12.800e-5985.61proteasome maturation factor ump1 family protein [... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G01810NO11G01810Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G01810.1NO11G01810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G01810.1.cds1NO11G01810.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01810.1.cds2NO11G01810.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G01810.1 ID=NO11G01810.1|Name=NO11G01810.1|organism=Nannochloropsis oceanica|type=mRNA|length=971bp
AGGTGGAGATTGGGGTGGGTACTGCGTGTGTGGGTTTGTGTATGAGGAAG
TGACTCAATCTCTTGCTTGCTTCTGTTGTGCTTGCACCATCACAATGATG
GGCGAGGCCGGGCTCCGACAAAGGAGAAAAGGTTCTCATCATCAGACAAC
TCACGCAAACAATAAAATCGCAGCACCACCGCGTCCACCCCTCATCTACG
TGCCCTGAGAATAAGAACTCACTCGGCCTCCTTGCGGCTTCTGGAAAGGG
AACTGAACTGAGGTGGTTCCATCGGGGCGACCCTCAATCATCGAAAACAC
CATCGCCGATTCCTATATCACAGGAGCGCAGCGCCGAACGACGAAGAAGC
AGAGACAATTTCTCACGACTTCACCTGCACAACATTCATCCACCACGTAG
GCAAGTCCATCAGTCTTCATTCGATACCATGTCATTCGAGATGGATCTGG
CACTGCCCGTGCTCAAGGAGCCTGTTGACCAGATGCGTGAGGGTATCAAG
GCCGGCGGCTTTCAAAGCGAGGCGACCGCGCCGCATCCGGTGCAAGCTTT
CCAGGCTACGCGCAAAGAGCGGGAATTTAGCGCTCGCCTTGACACGATCG
CTCGCCTGTATGGCGTGGCGGCTGCGATGCGCATGAAGACCGAAGCGGAC
ATTTTGAGCCAGATTTGCCGTGCCCCTGGCTTGCCTTCGTCGTTTGTGGG
GTTGGAAACTGTGTTGGGTACTGACGAGACGGTTGAATTCGAGGATGTAT
TGAATGACCCGCAAGAGCGACCGGATCTGCCGATGGTGTCGGTGCATGAG
AAGATGGAGGCCAGGTTGGGGTTGTAGGGCAGGAGGGAGGAAGGGAGGAA
GATCAAGGGGGAGTTGATCGCGGTGGGTTGGGGCGATCGAGGAAGCGGGA
AAGTGGGCAAAAATGGGAAGGTGGAAGGAGTAGGGGAAGAAAAGGGAAAA
TGTTGTCATCCAAGCTCCTTC
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protein sequence of NO11G01810.1

>NO11G01810.1-protein ID=NO11G01810.1-protein|Name=NO11G01810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=133bp
MSFEMDLALPVLKEPVDQMREGIKAGGFQSEATAPHPVQAFQATRKEREF
SARLDTIARLYGVAAAMRMKTEADILSQICRAPGLPSSFVGLETVLGTDE
TVEFEDVLNDPQERPDLPMVSVHEKMEARLGL*
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mRNA from alignment at chr11:597658..599011-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G01810.1 ID=NO11G01810.1|Name=NO11G01810.1|organism=Nannochloropsis oceanica|type=mRNA|length=1354bp|location=Sequence derived from alignment at chr11:597658..599011- (Nannochloropsis oceanica)
AGGTGGAGATTGGGGTGGGTACTGCGTGTGTGGGTTTGTGTATGAGGAAG TGACTCAATCTCTTGCTTGCTTCTGTTGTGCTTGCACCATCACAATGATG GGCGAGGCCGGGCTCCGACAAAGGAGAAAAGGTTCTCATCATCAGACAAC TCACGCAAACAATAAAATCGCAGCACCACCGCGTCCACCCCTCATCTACG TGCCCTGAGAATAAGAACTCACTCGGCCTCCTTGCGGCTTCTGGAAAGGG AACTGAACTGAGGTGGTTCCATCGGGGCGACCCTCAATCATCGAAAACAC CATCGCCGATTCCTATATCACAGGAGCGCAGCGCCGAACGACGAAGAAGC AGAGACAATTTCTCACGACTTCACCTGCACAACATTCATCCACCACGTAG GCAAGTCCATCAGTCTTCATTCGATACCATGTCATTCGAGATGGATCTGG CACTGCCCGTGCTCAAGGAGCCTGTTGACCAGATGCGTGAGGGTATCAAG GCCGGCGGCTTTCAAAGCGAGGCGACCGCGCCGCATCCGGTGCAAGCTTT CCAGGCTACGGTACGTTTGTATGCATCGAGAGGAGGAGGGACATACGCAG GAAGGGGATAGGCAAGCTCGTCTTTGGCGCCGTGGTGGTGATTTGCTCTC GGGGTGGGAGTCCATGATGCTTCTGTATTGGTGCTGTACTCATTCGGCGG GCCATGTGCCTGCTGCGAGCCCAGCCTTCTTCACTTTACATCGCCCGCCC CGATGTTGAGCAAATATGCGCACCTATACAAGCGTTGCTCTACAGGATAG CCTTCCAATTATATTTGTGCTCGGTCCCTCTGTTCTTCTCCCGTTACCGC AACCCTTCCCCTTCATCGTCTGTGCTTCCCTCCCTCTTTTTCCTCTTACC GCATCCTCACCCACCATGCCATCCCCTTTCCTCTAACTAACAGCGCAAAG AGCGGGAATTTAGCGCTCGCCTTGACACGATCGCTCGCCTGTATGGCGTG GCGGCTGCGATGCGCATGAAGACCGAAGCGGACATTTTGAGCCAGATTTG CCGTGCCCCTGGCTTGCCTTCGTCGTTTGTGGGGTTGGAAACTGTGTTGG GTACTGACGAGACGGTTGAATTCGAGGATGTATTGAATGACCCGCAAGAG CGACCGGATCTGCCGATGGTGTCGGTGCATGAGAAGATGGAGGCCAGGTT GGGGTTGTAGGGCAGGAGGGAGGAAGGGAGGAAGATCAAGGGGGAGTTGA TCGCGGTGGGTTGGGGCGATCGAGGAAGCGGGAAAGTGGGCAAAAATGGG AAGGTGGAAGGAGTAGGGGAAGAAAAGGGAAAATGTTGTCATCCAAGCTC CTTC
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Coding sequence (CDS) from alignment at chr11:597658..599011-

>NO11G01810.1 ID=NO11G01810.1|Name=NO11G01810.1|organism=Nannochloropsis oceanica|type=CDS|length=399bp|location=Sequence derived from alignment at chr11:597658..599011- (Nannochloropsis oceanica)
ATGTCATTCGAGATGGATCTGGCACTGCCCGTGCTCAAGGAGCCTGTTGA
CCAGATGCGTGAGGGTATCAAGGCCGGCGGCTTTCAAAGCGAGGCGACCG
CGCCGCATCCGGTGCAAGCTTTCCAGGCTACGCGCAAAGAGCGGGAATTT
AGCGCTCGCCTTGACACGATCGCTCGCCTGTATGGCGTGGCGGCTGCGAT
GCGCATGAAGACCGAAGCGGACATTTTGAGCCAGATTTGCCGTGCCCCTG
GCTTGCCTTCGTCGTTTGTGGGGTTGGAAACTGTGTTGGGTACTGACGAG
ACGGTTGAATTCGAGGATGTATTGAATGACCCGCAAGAGCGACCGGATCT
GCCGATGGTGTCGGTGCATGAGAAGATGGAGGCCAGGTTGGGGTTGTAG
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Synonyms
Publications