NO11G01810, NO11G01810 (gene) Nannochloropsis oceanica

Overview
NameNO11G01810
Unique NameNO11G01810
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1354
Alignment locationchr11:597658..599011 -

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Properties
Property NameValue
DescriptionProteasome maturation factor ump1 family protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:597658..599011 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0043248proteasome assembly
GO:0016043cellular component organization
Vocabulary: INTERPRO
TermDefinition
IPR008012UMP1
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Homology
[Close]
BLAST of NO11G01810 vs. NCBI_GenBank
Match: EWM25028.1 (proteasome maturation factor ump1 family protein [Nannochloropsis gaditana])

HSP 1 Score: 237.3 bits (604), Expect = 2.800e-59
Identity = 113/132 (85.61%), Postives = 126/132 (95.45%), Query Frame = 0 
Query:    1 MSFEMDLALPVLKEPVDQMREGIKAGGFQSEATAPHPVQAFQATRKEREFSARLDTIARLYGVAAAMRMKTEADILSQICRAPGLPSSFVGLETVLGTDETVEFEDVLNDPQERPDLPMVSVHEKMEARLGL 133
            MSFE+DLALP+LKEPVDQMREG+KAGGF+SEA APHPVQAFQATRKE EF ARLDTIARLYG+AAAMR+KTE DILS++CRAPGLPSS VGLETVLGTDET+EFEDVLNDPQERPD+P++ VHE+MEARLGL
Sbjct:    1 MSFELDLALPLLKEPVDQMREGLKAGGFRSEAVAPHPVQAFQATRKEAEFQARLDTIARLYGIAAAMRLKTERDILSRVCRAPGLPSSMVGLETVLGTDETIEFEDVLNDPQERPDMPLIPVHERMEARLGL 132
[Close]
BLAST of NO11G01810 vs. NCBI_GenBank
Match: CBJ29315.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 122.5 bits (306), Expect = 1.000e-24
Identity = 65/132 (49.24%), Postives = 83/132 (62.88%), Query Frame = 0 
Query:    1 MSFEMDLALPVLKEPVDQMREGIKAGGFQSEATAPHPVQAFQATRKEREFSARLDTIARLYGVAAAMRMKTEADILSQICRAPGLPSSFVGLETVLGTDETVEFEDVLNDPQERPDLPMVSVHEKMEARLGL 133
            M+  M  A+P+ + P DQMR G  +  F  +A+A HP++A    R   EF  ++D   ++YG A  MRMKTE   LSQ    PGLPSS +GLETVLG DETVEFED L+ P +RP+ P   VHE ME + GL
Sbjct:    1 MAGMMGKAMPMARAPHDQMRFGFSS--FAQDASAGHPLEAMNKARIPNEFDFKMDLAGKVYGSAFVMRMKTEVATLSQAQHLPGLPSSMLGLETVLGRDETVEFEDYLDPPADRPEGPRFRVHEAMEIQYGL 130
[Close]
BLAST of NO11G01810 vs. NCBI_GenBank
Match: XP_008864603.1 (hypothetical protein H310_02758 [Aphanomyces invadans] >ETW06528.1 hypothetical protein H310_02758 [Aphanomyces invadans])

HSP 1 Score: 110.9 bits (276), Expect = 3.000e-21
Identity = 57/126 (45.24%), Postives = 82/126 (65.08%), Query Frame = 0 
Query:    8 ALPVLKEPVDQMREGIKAGGFQSEATAP-HPVQAFQATRKEREFSARLDTIARLYGVAAAMRMKTEADILSQICRAPGLPSSFVGLETVLGTDETVEFEDVLNDPQERPDLPMVSVHEKMEARLGL 133
            +LP+L+   D MR G +     SE T P H VQ  +  R+ R F  ++ ++ ++YG AAAMR++TE  +L Q  R PGLPSS  GL+TVLG D+T++F D+LNDPQ+ P+ P   VH+ ME +L +
Sbjct:    5 SLPLLRAGPDLMRVGFQRA---SEDTRPVHEVQRLETHRRLRGFEGKMRSVEQIYGKAAAMRLRTEKILLEQHTRLPGLPSSRCGLDTVLGNDDTLDFTDILNDPQDSPEAPQFRVHDVMEVKLAI 127
[Close]
BLAST of NO11G01810 vs. NCBI_GenBank
Match: XP_009835144.1 (hypothetical protein H257_10335 [Aphanomyces astaci] >ETV75510.1 hypothetical protein H257_10335 [Aphanomyces astaci])

HSP 1 Score: 104.4 bits (259), Expect = 2.800e-19
Identity = 57/126 (45.24%), Postives = 81/126 (64.29%), Query Frame = 0 
Query:    8 ALPVLKEPVDQMREGIKAGGFQSEATAP-HPVQAFQATRKEREFSARLDTIARLYGVAAAMRMKTEADILSQICRAPGLPSSFVGLETVLGTDETVEFEDVLNDPQERPDLPMVSVHEKMEARLGL 133
            +LP+L+   D MR G +     SE T P H VQ  +  R+ R F  +++++ ++YG AAAMR +TE  +L Q  R PGLPSS  GL+T+LG DET++F D+LNDPQE P+     VH+ ME +L +
Sbjct:    5 SLPLLRAGPDLMRVGFQRA---SEDTRPVHEVQRLETHRRLRGFEGKMNSVEQIYGKAAAMRFRTEKVLLEQHTRLPGLPSSRCGLDTLLGNDETLDFADILNDPQEAPE-AQFRVHDIMEVKLAI 126
[Close]
BLAST of NO11G01810 vs. NCBI_GenBank
Match: OQR85315.1 (hypothetical protein THRCLA_23042 [Thraustotheca clavata])

HSP 1 Score: 102.8 bits (255), Expect = 8.200e-19
Identity = 52/125 (41.60%), Postives = 80/125 (64.00%), Query Frame = 0 
Query:    8 ALPVLKEPVDQMREGIKAGGFQSEATAPHPVQAFQATRKEREFSARLDTIARLYGVAAAMRMKTEADILSQICRAPGLPSSFVGLETVLGTDETVEFEDVLNDPQERPDLPMVSVHEKMEARLGL 133
            +LP+L+   D +R G ++    S A   H VQ  +  ++ R F  +++T+ ++YG AAAMR++TE  +L Q  R PGLPSS VGL+T+LG D+ ++F DVLN+P E P+     VH+ ME +L +
Sbjct:    5 SLPLLRAGPDVLRVGWQSAAQDSRAV--HEVQRLEMHQRLRGFEGKMNTVEQIYGKAAAMRLRTEKILLEQHVRMPGLPSSHVGLDTILGNDDVIDFTDVLNEPSENPEATF-RVHDAMEVKLAI 126
[Close]
BLAST of NO11G01810 vs. NCBI_GenBank
Match: XP_008898685.1 (hypothetical protein PPTG_06511 [Phytophthora parasitica INRA-310] >ETI31174.1 hypothetical protein F443_21813 [Phytophthora parasitica P1569] >ETM31490.1 hypothetical protein L914_20948 [Phytophthora parasitica] >ETN16351.1 hypothetical protein PPTG_06511 [Phytophthora parasitica INRA-310] >ETO59891.1 hypothetical protein F444_21836 [Phytophthora parasitica P1976] >ETP29132.1 hypothetical protein F442_21673 [Phytophthora parasitica P10297])

HSP 1 Score: 102.4 bits (254), Expect = 1.100e-18
Identity = 54/125 (43.20%), Postives = 76/125 (60.80%), Query Frame = 0 
Query:    9 LPVLKEPVDQMREGIKAGGFQSEATAP-HPVQAFQATRKEREFSARLDTIARLYGVAAAMRMKTEADILSQICRAPGLPSSFVGLETVLGTDETVEFEDVLNDPQERPDLPMVSVHEKMEARLGL 133
            LP+++ P D +R G  +    SE   P H VQ  Q T ++  +  ++ T+ ++YG AAAMR++TE  +L Q  R PGLPSS  GL+T+ G DE +EF D LNDP E P+     VHE ME +L +
Sbjct:   27 LPLVRAPPDALRFGFYSA---SEDVRPVHEVQRLQTTHRQSNWELKMATVEQVYGKAAAMRLRTEKAVLEQFTRLPGLPSSHAGLDTLTGVDEQIEFTDFLNDPNEHPE-NTFRVHEAMEVKLSI 147
[Close]
BLAST of NO11G01810 vs. NCBI_GenBank
Match: XP_008898684.1 (hypothetical protein, variant [Phytophthora parasitica INRA-310] >ETI31175.1 hypothetical protein, variant [Phytophthora parasitica P1569] >ETK71577.1 hypothetical protein L915_21207 [Phytophthora parasitica] >ETL25014.1 hypothetical protein L916_21075 [Phytophthora parasitica] >ETL78229.1 hypothetical protein L917_20931 [Phytophthora parasitica] >ETM31491.1 hypothetical protein, variant [Phytophthora parasitica] >ETN16352.1 hypothetical protein, variant [Phytophthora parasitica INRA-310] >ETO59892.1 hypothetical protein, variant [Phytophthora parasitica P1976] >ETP00990.1 hypothetical protein F441_21694 [Phytophthora parasitica CJ01A1] >ETP29133.1 hypothetical protein, variant [Phytophthora parasitica P10297])

HSP 1 Score: 102.4 bits (254), Expect = 1.100e-18
Identity = 54/125 (43.20%), Postives = 76/125 (60.80%), Query Frame = 0 
Query:    9 LPVLKEPVDQMREGIKAGGFQSEATAP-HPVQAFQATRKEREFSARLDTIARLYGVAAAMRMKTEADILSQICRAPGLPSSFVGLETVLGTDETVEFEDVLNDPQERPDLPMVSVHEKMEARLGL 133
            LP+++ P D +R G  +    SE   P H VQ  Q T ++  +  ++ T+ ++YG AAAMR++TE  +L Q  R PGLPSS  GL+T+ G DE +EF D LNDP E P+     VHE ME +L +
Sbjct:   21 LPLVRAPPDALRFGFYSA---SEDVRPVHEVQRLQTTHRQSNWELKMATVEQVYGKAAAMRLRTEKAVLEQFTRLPGLPSSHAGLDTLTGVDEQIEFTDFLNDPNEHPE-NTFRVHEAMEVKLSI 141
[Close]
BLAST of NO11G01810 vs. NCBI_GenBank
Match: ETK71578.1 (hypothetical protein, variant [Phytophthora parasitica] >ETL25015.1 hypothetical protein, variant [Phytophthora parasitica] >ETL78230.1 hypothetical protein, variant [Phytophthora parasitica] >ETP00991.1 hypothetical protein, variant [Phytophthora parasitica CJ01A1] >KUF81428.1 Proteasome maturation protein [Phytophthora nicotianae] >KUF88306.1 Proteasome maturation protein [Phytophthora nicotianae])

HSP 1 Score: 102.4 bits (254), Expect = 1.100e-18
Identity = 54/125 (43.20%), Postives = 76/125 (60.80%), Query Frame = 0 
Query:    9 LPVLKEPVDQMREGIKAGGFQSEATAP-HPVQAFQATRKEREFSARLDTIARLYGVAAAMRMKTEADILSQICRAPGLPSSFVGLETVLGTDETVEFEDVLNDPQERPDLPMVSVHEKMEARLGL 133
            LP+++ P D +R G  +    SE   P H VQ  Q T ++  +  ++ T+ ++YG AAAMR++TE  +L Q  R PGLPSS  GL+T+ G DE +EF D LNDP E P+     VHE ME +L +
Sbjct:    6 LPLVRAPPDALRFGFYSA---SEDVRPVHEVQRLQTTHRQSNWELKMATVEQVYGKAAAMRLRTEKAVLEQFTRLPGLPSSHAGLDTLTGVDEQIEFTDFLNDPNEHPE-NTFRVHEAMEVKLSI 126
[Close]
BLAST of NO11G01810 vs. NCBI_GenBank
Match: XP_002906885.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY66286.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 101.3 bits (251), Expect = 2.400e-18
Identity = 53/126 (42.06%), Postives = 77/126 (61.11%), Query Frame = 0 
Query:    8 ALPVLKEPVDQMREGIKAGGFQSEATAP-HPVQAFQATRKEREFSARLDTIARLYGVAAAMRMKTEADILSQICRAPGLPSSFVGLETVLGTDETVEFEDVLNDPQERPDLPMVSVHEKMEARLGL 133
            +LP+++ P D +R G  +    SE   P H VQ  Q T ++  +  ++ T+ ++YG AAAMR+++E  +L Q  R PGLPSS  GL+T+ G DE +EF D LNDP E P+     VHE ME +L +
Sbjct:    5 SLPLVRAPPDALRFGFYSA---SEDVRPVHEVQRLQTTHRQSNWELKMATVEQVYGKAAAMRLRSEKAVLEQFTRLPGLPSSHAGLDTLTGADEQIEFTDFLNDPNEHPE-NTFRVHEAMEVKLSI 126
[Close]
BLAST of NO11G01810 vs. NCBI_GenBank
Match: XP_012194089.1 (hypothetical protein SPRG_18875 [Saprolegnia parasitica CBS 223.65] >KDO35729.1 hypothetical protein SPRG_18875 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 100.9 bits (250), Expect = 3.100e-18
Identity = 51/125 (40.80%), Postives = 82/125 (65.60%), Query Frame = 0 
Query:    8 ALPVLKEPVDQMREGIKAGGFQSEATAPHPVQAFQATRKEREFSARLDTIARLYGVAAAMRMKTEADILSQICRAPGLPSSFVGLETVLGTDETVEFEDVLNDPQERPDLPMVSVHEKMEARLGL 133
            +LP+L+   D +R G +      +A   H VQ  +  R+   F A+++++ ++YG AAAMR++TE  +L Q  R PGLPSS VGL+T++G D+T++F D+LN+PQE P++    VH+ ME +L +
Sbjct:    5 SLPLLRAGPDVLRVGWQRA--DQDARPVHEVQRLEMHRRVHGFEAKMNSVEQIYGKAAAMRLRTEKIMLEQHVRLPGLPSSRVGLDTLMGNDDTLDFADILNEPQENPEVHF-RVHDAMEVKLAI 126
The following BLAST results are available for this feature:
BLAST of NO11G01810 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25028.12.800e-5985.61proteasome maturation factor ump1 family protein [... [more]
CBJ29315.11.000e-2449.24conserved unknown protein [Ectocarpus siliculosus][more]
XP_008864603.13.000e-2145.24hypothetical protein H310_02758 [Aphanomyces invad... [more]
XP_009835144.12.800e-1945.24hypothetical protein H257_10335 [Aphanomyces astac... [more]
OQR85315.18.200e-1941.60hypothetical protein THRCLA_23042 [Thraustotheca c... [more]
XP_008898685.11.100e-1843.20hypothetical protein PPTG_06511 [Phytophthora para... [more]
XP_008898684.11.100e-1843.20hypothetical protein, variant [Phytophthora parasi... [more]
ETK71578.11.100e-1843.20hypothetical protein, variant [Phytophthora parasi... [more]
XP_002906885.12.400e-1842.06conserved hypothetical protein [Phytophthora infes... [more]
XP_012194089.13.100e-1840.80hypothetical protein SPRG_18875 [Saprolegnia paras... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002082NSK002082Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G01810.1NO11G01810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591299gene_5068Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100049g12gene5464Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G01810.1NO11G01810.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G01810 ID=NO11G01810|Name=NO11G01810|organism=Nannochloropsis oceanica|type=gene|length=1354bp
AGGTGGAGATTGGGGTGGGTACTGCGTGTGTGGGTTTGTGTATGAGGAAG
TGACTCAATCTCTTGCTTGCTTCTGTTGTGCTTGCACCATCACAATGATG
GGCGAGGCCGGGCTCCGACAAAGGAGAAAAGGTTCTCATCATCAGACAAC
TCACGCAAACAATAAAATCGCAGCACCACCGCGTCCACCCCTCATCTACG
TGCCCTGAGAATAAGAACTCACTCGGCCTCCTTGCGGCTTCTGGAAAGGG
AACTGAACTGAGGTGGTTCCATCGGGGCGACCCTCAATCATCGAAAACAC
CATCGCCGATTCCTATATCACAGGAGCGCAGCGCCGAACGACGAAGAAGC
AGAGACAATTTCTCACGACTTCACCTGCACAACATTCATCCACCACGTAG
GCAAGTCCATCAGTCTTCATTCGATACCATGTCATTCGAGATGGATCTGG
CACTGCCCGTGCTCAAGGAGCCTGTTGACCAGATGCGTGAGGGTATCAAG
GCCGGCGGCTTTCAAAGCGAGGCGACCGCGCCGCATCCGGTGCAAGCTTT
CCAGGCTACGgtacgtttgtatgcatcgagaggaggagggacatacgcag
gaaggggataggcaagctcgtctttggcgccgtggtggtgatttgctctc
ggggtgggagtccatgatgcttctgtattggtgctgtactcattcggcgg
gccatgtgcctgctgcgagcccagccttcttcactttacatcgcccgccc
cgatgttgagcaaatatgcgcacctatacaagcgttgctctacaggatag
ccttccaattatatttgtgctcggtccctctgttcttctcccgttaccgc
aacccttccccttcatcgtctgtgcttccctccctctttttcctcttacc
gcatcctcacccaccatgccatcccctttcctctaactaacagCGCAAAG
AGCGGGAATTTAGCGCTCGCCTTGACACGATCGCTCGCCTGTATGGCGTG
GCGGCTGCGATGCGCATGAAGACCGAAGCGGACATTTTGAGCCAGATTTG
CCGTGCCCCTGGCTTGCCTTCGTCGTTTGTGGGGTTGGAAACTGTGTTGG
GTACTGACGAGACGGTTGAATTCGAGGATGTATTGAATGACCCGCAAGAG
CGACCGGATCTGCCGATGGTGTCGGTGCATGAGAAGATGGAGGCCAGGTT
GGGGTTGTAGGGCAGGAGGGAGGAAGGGAGGAAGATCAAGGGGGAGTTGA
TCGCGGTGGGTTGGGGCGATCGAGGAAGCGGGAAAGTGGGCAAAAATGGG
AAGGTGGAAGGAGTAGGGGAAGAAAAGGGAAAATGTTGTCATCCAAGCTC
CTTC
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protein sequence of NO11G01810.1

>NO11G01810.1-protein ID=NO11G01810.1-protein|Name=NO11G01810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=133bp
MSFEMDLALPVLKEPVDQMREGIKAGGFQSEATAPHPVQAFQATRKEREF
SARLDTIARLYGVAAAMRMKTEADILSQICRAPGLPSSFVGLETVLGTDE
TVEFEDVLNDPQERPDLPMVSVHEKMEARLGL*
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Synonyms
Publications