NO11G01410, NO11G01410 (gene) Nannochloropsis oceanica

Overview
NameNO11G01410
Unique NameNO11G01410
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length953
Alignment locationchr11:483872..484824 +

Link to JBrowse

Properties
Property NameValue
DescriptionMolybdopterin synthase catalytic subunit
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:483872..484824 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006777Mo-molybdopterin cofactor biosynthetic process
Vocabulary: INTERPRO
TermDefinition
IPR036563MoaE_sf
IPR003448Mopterin_biosynth_MoaE
Homology
BLAST of NO11G01410 vs. NCBI_GenBank
Match: XP_008870595.1 (hypothetical protein H310_07081 [Aphanomyces invadans] >ETW00460.1 hypothetical protein H310_07081 [Aphanomyces invadans])

HSP 1 Score: 155.2 bits (391), Expect = 2.000e-34
Identity = 83/158 (52.53%), Postives = 100/158 (63.29%), Query Frame = 0
Query:    4 LPDYVLVADAQVDLNSLVQRVGDPGAGAIATFLGVTRDNFNGKPVVRLEYEGYVPMAEKVMHAICVEIRNRW-AVLSVAMEHRLGTCPVGEASVGIAISSPHRREALEAVAFAIDAIKANVPVWKKEFYADGSYHKGPDGSCIECAGAHAWKVNAEWQ 161
            +PD + V +A +D +  V  V    AG I++F+G TRD F GK VV LEYEGYVPMAEK + AIC  IR  W  V+ +A+ HRLG   V EASV IA+SSPHRREALEAVAFAID +KA VP+WK E Y      +G D           WK N EW+
Sbjct:   10 IPDLIRVTEAVLDHDEAVAHVTHASAGGISSFIGTTRDTFQGKKVVHLEYEGYVPMAEKELRAICTSIRTSWPGVVGIALLHRLGVVAVKEASVVIAVSSPHRREALEAVAFAIDTLKARVPIWKLEKY------EGDD---------RMWKENPEWR 152          
BLAST of NO11G01410 vs. NCBI_GenBank
Match: XP_013757289.1 (molybdenum cofactor biosynthesis protein D/E [Thecamonas trahens ATCC 50062] >KNC50132.1 molybdenum cofactor biosynthesis protein D/E [Thecamonas trahens ATCC 50062])

HSP 1 Score: 155.2 bits (391), Expect = 2.000e-34
Identity = 81/154 (52.60%), Postives = 103/154 (66.88%), Query Frame = 0
Query:    6 DYVLVADAQVDLNSLVQRVGDPGAGAIATFLGVTRDNFNGKPVVRLEYEGYVPMAEKVMHAICVEIRNRWA-VLSVAMEHRLGTCPVGEASVGIAISSPHRREALEAVAFAIDAIKANVPVWKKEFYADGSYHKGPDGSCIECAGAHAWKVNAE 159
            D VL++D  +D+ +L +R    GAGA++ F GVTRDNFNG+PV RLEYE Y PMA + M  IC + R +W  +L V + HR+GT PV +ASV I  SSPHR E+L AV +AIDA+KA+VP+WKKEFYA        DG  IE      WK N+E
Sbjct:  103 DLVLLSDGPLDIGALYERALASGAGAVSMFSGVTRDNFNGQPVERLEYEAYGPMAMREMAKICAKAREQWPDLLHVVIAHRIGTVPVSDASVVILASSPHRAESLAAVTWAIDALKASVPIWKKEFYAAA---PADDGVEIEPPPPSRWKANSE 253          
BLAST of NO11G01410 vs. NCBI_GenBank
Match: XP_009519608.1 (hypothetical protein PHYSODRAFT_556917 [Phytophthora sojae] >EGZ24320.1 hypothetical protein PHYSODRAFT_556917 [Phytophthora sojae])

HSP 1 Score: 154.8 bits (390), Expect = 2.600e-34
Identity = 83/158 (52.53%), Postives = 97/158 (61.39%), Query Frame = 0
Query:    6 DYVLVADAQVDLNSLVQRVGDPGAGAIATFLGVTRDNFNGKPVVRLEYEGYVPMAEKVMHAICVEIRNRW-AVLSVAMEHRLGTCPVGEASVGIAISSPHRREALEAVAFAIDAIKANVPVWKKEFYADGSYHKGPDGSCIECAGAHAWKVNAEWQGG 163
            D+V V  A +D    V+ V  P AGAI+TF+G TRDNF GK VVRLEYEGY PMA   +  ICV IR +W  V+ VA+ HRLG   V EASV +A+SSPHRREALEA AFAID +KA VP+WK E Y                     WK N EW+ G
Sbjct:   19 DFVEVGYAPLDNQRAVELVMHPSAGAISTFVGTTRDNFQGKKVVRLEYEGYTPMAVSELRKICVTIREKWPEVVGVALFHRLGVVEVAEASVIVAVSSPHRREALEACAFAIDTLKATVPIWKSEQYE---------------GDTRVWKENVEWKDG 161          
BLAST of NO11G01410 vs. NCBI_GenBank
Match: EKC21549.1 (Molybdenum cofactor synthesis protein 2B [Crassostrea gigas])

HSP 1 Score: 154.5 bits (389), Expect = 3.400e-34
Identity = 72/137 (52.55%), Postives = 96/137 (70.07%), Query Frame = 0
Query:    6 DYVLVADAQVDLNSLVQRVGDPGAGAIATFLGVTRDNFNGKPVVRLEYEGYVPMAEKVMHAICVEIRNRWAVLSVAMEHRLGTCPVGEASVGIAISSPHRREALEAVAFAIDAIKANVPVWKKEFYADGSYHKGPDG 143
            DY+ + D  +D+N + Q V DP  GAI+ F+G+TRDNF+GK V+RLEYE Y PMA+K M  IC  IR +W + S+AM HR+   P+ EAS+ IAISSPHR+E+L+AV +AID +KA VP+WKK  +  G   K   G
Sbjct:    2 DYIEITDEILDVNEISQMVTDPSCGAISIFVGITRDNFDGKKVLRLEYEAYKPMAKKKMKEICDSIRKQWEIHSIAMIHRINVVPISEASIVIAISSPHRKESLQAVEYAIDTLKATVPIWKKMSHPAGRKTKSVHG 138          
BLAST of NO11G01410 vs. NCBI_GenBank
Match: OQR83277.1 (molybdenum cofactor synthesis protein 2 large subunit [Achlya hypogyna])

HSP 1 Score: 153.7 bits (387), Expect = 5.700e-34
Identity = 83/158 (52.53%), Postives = 102/158 (64.56%), Query Frame = 0
Query:    4 LPDYVLVADAQVDLNSLVQRVGDPGAGAIATFLGVTRDNFNGKPVVRLEYEGYVPMAEKVMHAICVEIRNRWA-VLSVAMEHRLGTCPVGEASVGIAISSPHRREALEAVAFAIDAIKANVPVWKKEFYADGSYHKGPDGSCIECAGAHAWKVNAEWQ 161
            + D+V+V    + L++ V+ V    AGAI+TF+G TRDNF GK V  LEYEGYVPMAEK +  ICV IR +W  V+ +AM HRLG   V EASV IA+SSPHR+EALEAVA+ ID +KA VP+WK E YA      G D           WK N EW+
Sbjct:    1 MSDWVVVTPEPLSLDTAVRHVEHESAGAISTFVGTTRDNFQGKVVEHLEYEGYVPMAEKELKNICVSIRTKWPHVVGIAMLHRLGVVAVKEASVIIAVSSPHRQEALEAVAYGIDTLKARVPIWKLEKYA------GDD---------RVWKENPEWR 143          
BLAST of NO11G01410 vs. NCBI_GenBank
Match: XP_001701053.1 (molybdopterin synthase, partial [Chlamydomonas reinhardtii])

HSP 1 Score: 152.5 bits (384), Expect = 1.300e-33
Identity = 72/129 (55.81%), Postives = 96/129 (74.42%), Query Frame = 0
Query:   10 VADAQVDLNSLVQRVGDPGAGAIATFLGVTRDNFNGKPVVRLEYEGYVPMAEKVMHAICVEIRNRWAVLSVAMEHRLGTCPVGEASVGIAISSPHRREALEAVAFAIDAIKANVPVWKKEFYADGSYHK 139
            V    +D++  V+ V DPGAGAI+TF GVTR+NF GK V++L+YE Y PMA K +  +  ++ N+W+V  VA+ HR+GT  VGE SV IA+SS HRRE+LEAV +AID +KA+VP+WKKEF+ DGS  K
Sbjct:    8 VTSDPLDISRYVELVADPGAGAISTFTGVTRNNFQGKTVIKLDYEAYTPMALKKLQELAHQVTNKWSVCKVAIAHRVGTVLVGEPSVIIAVSSAHRRESLEAVHWAIDELKASVPIWKKEFFEDGSVWK 136          
BLAST of NO11G01410 vs. NCBI_GenBank
Match: PNW80549.1 (hypothetical protein CHLRE_07g322250v5 [Chlamydomonas reinhardtii])

HSP 1 Score: 152.5 bits (384), Expect = 1.300e-33
Identity = 72/129 (55.81%), Postives = 96/129 (74.42%), Query Frame = 0
Query:   10 VADAQVDLNSLVQRVGDPGAGAIATFLGVTRDNFNGKPVVRLEYEGYVPMAEKVMHAICVEIRNRWAVLSVAMEHRLGTCPVGEASVGIAISSPHRREALEAVAFAIDAIKANVPVWKKEFYADGSYHK 139
            V    +D++  V+ V DPGAGAI+TF GVTR+NF GK V++L+YE Y PMA K +  +  ++ N+W+V  VA+ HR+GT  VGE SV IA+SS HRRE+LEAV +AID +KA+VP+WKKEF+ DGS  K
Sbjct:    8 VTSDPLDISRYVELVADPGAGAISTFTGVTRNNFQGKTVIKLDYEAYTPMALKKLQELAHQVTNKWSVCKVAIAHRVGTVLVGEPSVIIAVSSAHRRESLEAVHWAIDELKASVPIWKKEFFEDGSVWK 136          
BLAST of NO11G01410 vs. NCBI_GenBank
Match: ETL43710.1 (hypothetical protein L916_05856 [Phytophthora parasitica] >ETP48125.1 hypothetical protein F442_06076 [Phytophthora parasitica P10297])

HSP 1 Score: 152.1 bits (383), Expect = 1.700e-33
Identity = 81/158 (51.27%), Postives = 95/158 (60.13%), Query Frame = 0
Query:    6 DYVLVADAQVDLNSLVQRVGDPGAGAIATFLGVTRDNFNGKPVVRLEYEGYVPMAEKVMHAICVEIRNRWA-VLSVAMEHRLGTCPVGEASVGIAISSPHRREALEAVAFAIDAIKANVPVWKKEFYADGSYHKGPDGSCIECAGAHAWKVNAEWQGG 163
            D+V V    +D    V  V  P AGAI+TF+G TRDNF GK VVRLEYEGY PMA   +  ICV +R +W  V+ VA+ HRLG   V EASV +A+SSPHRREALEA AFAID +KA VP+WK E Y                     WK N EW+ G
Sbjct:   19 DFVEVGYESLDNQRAVALVTHPSAGAISTFVGTTRDNFRGKKVVRLEYEGYTPMAVSELRKICVIVREKWPDVVGVALFHRLGVVEVAEASVVVAVSSPHRREALEACAFAIDTLKATVPIWKSEQYE---------------GDTRTWKENVEWKNG 161          
BLAST of NO11G01410 vs. NCBI_GenBank
Match: KUF95746.1 (Molybdopterin synthase catalytic subunit [Phytophthora nicotianae])

HSP 1 Score: 152.1 bits (383), Expect = 1.700e-33
Identity = 81/158 (51.27%), Postives = 95/158 (60.13%), Query Frame = 0
Query:    6 DYVLVADAQVDLNSLVQRVGDPGAGAIATFLGVTRDNFNGKPVVRLEYEGYVPMAEKVMHAICVEIRNRWA-VLSVAMEHRLGTCPVGEASVGIAISSPHRREALEAVAFAIDAIKANVPVWKKEFYADGSYHKGPDGSCIECAGAHAWKVNAEWQGG 163
            D+V V    +D    V  V  P AGAI+TF+G TRDNF GK VVRLEYEGY PMA   +  ICV +R +W  V+ VA+ HRLG   V EASV +A+SSPHRREALEA AFAID +KA VP+WK E Y                     WK N EW+ G
Sbjct:   19 DFVEVGYESLDNQRAVALVTHPSAGAISTFVGTTRDNFRGKKVVRLEYEGYTPMAVSELRKICVIVREKWPDVVGVALFHRLGVVEVAEASVVVAVSSPHRREALEACAFAIDTLKATVPIWKSEQYE---------------GDTRTWKENVEWKNG 161          
BLAST of NO11G01410 vs. NCBI_GenBank
Match: XP_011306690.1 (PREDICTED: molybdopterin synthase catalytic subunit [Fopius arisanus])

HSP 1 Score: 151.0 bits (380), Expect = 3.700e-33
Identity = 74/159 (46.54%), Postives = 103/159 (64.78%), Query Frame = 0
Query:    1 MERLPDYVLVADAQVDLNSLVQRVGDPGAGAIATFLGVTRDNFNGKPVVRLEYEGYVPMAEKVMHAICVEIRNRWAVLSVAMEHRLGTCPVGEASVGIAISSPHRREALEAVAFAIDAIKANVPVWKKEFYADGSYHKGPDGSCIECAGAHAWKVNAEW 160
            ME     V +   ++++N +++ V  P  GA++TF+G TRDNF  K V++LEYE Y PMA K M +IC +IR++W V  +A+ HRLG  PV E+S+ IAISSPHR+++L+AV FAID +K++VP+WKKE Y D     G D           WK N EW
Sbjct:    1 MEDKKSIVHLQKEKLNINEIIEAVISPSCGAVSTFIGTTRDNFEAKKVLKLEYEAYEPMALKEMSSICRKIRDQWNVEHIAIFHRLGEVPVSESSIAIAISSPHRQDSLQAVQFAIDTVKSSVPIWKKEIYEDA----GSDSQ---------WKENKEW 146          
The following BLAST results are available for this feature:
BLAST of NO11G01410 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_008870595.12.000e-3452.53hypothetical protein H310_07081 [Aphanomyces invad... [more]
XP_013757289.12.000e-3452.60molybdenum cofactor biosynthesis protein D/E [Thec... [more]
XP_009519608.12.600e-3452.53hypothetical protein PHYSODRAFT_556917 [Phytophtho... [more]
EKC21549.13.400e-3452.55Molybdenum cofactor synthesis protein 2B [Crassost... [more]
OQR83277.15.700e-3452.53molybdenum cofactor synthesis protein 2 large subu... [more]
XP_001701053.11.300e-3355.81molybdopterin synthase, partial [Chlamydomonas rei... [more]
PNW80549.11.300e-3355.81hypothetical protein CHLRE_07g322250v5 [Chlamydomo... [more]
ETL43710.11.700e-3351.27hypothetical protein L916_05856 [Phytophthora para... [more]
KUF95746.11.700e-3351.27Molybdopterin synthase catalytic subunit [Phytopht... [more]
XP_011306690.13.700e-3346.54PREDICTED: molybdopterin synthase catalytic subuni... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL116nonsL116Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR019ngnoR019Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002125NSK002125Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G01410.1NO11G01410.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591149gene_5023Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100098g7gene5422Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G01410.1NO11G01410.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G01410 ID=NO11G01410|Name=NO11G01410|organism=Nannochloropsis oceanica|type=gene|length=953bp
ATCCGACTGCACTGCGGGTGGCAATGACTCCTCCGATCATGGGCCGAGGA
GGGTCCAGAGCGGTCGCCGATGAATGAAGGCTTGTACCAGGTCGATTGAC
AATGAAACCCTGAGCATTGCATGCAAGCGTTTTGAGGCTGCCTGGCATAC
TGGCGATTGAAGTGGGTATCGACACTTTTGGGAGAGTGTTTAACTGATCT
CACACAACCTCCCCACCACCACTGTCCACATCACTACAGCGTCCCTCTCC
CTGATACCCGTGAGGACGATAACGACTAGAGAGCAGCAGCAAACGCAATG
GAGCGGTTACCAGACTATGTCCTGGTCGCTGACGCTCAGGTGGATTTGAA
TTCGCTGGTTCAGAGGGTTGGGGACCCTGGGGCAGGGGCCATTGCCACTT
TCCTGGGCGTAACACGGGACAATTTCAATGGCAAGCCCGTCGTCCGCCTT
GAGTACGAGGGCTACGTGCCCATGGCTGAAAAGGTGATGCATGCAATTTG
CGTCGAGgtaagaacgtgcgtgcatttgggtgtcatcatcaggttgcagc
cttatcattgtccctctccttcccacccctctagATCCGAAACCGGTGGG
CCGTCCTTTCCGTTGCCATGGAGCACCGGCTTGGCACTTGCCCAGTAGGG
GAGGCAAGCGTGGGAATCGCAATTTCATCTCCGCATCGGCGCGAAGCTCT
GGAAGCAGTTGCATTTGCGATAGATGCCATCAAGGCGAATGTCCCTGTAT
GGAAGAAGGAGTTCTACGCTGATGGCAGCTACCACAAAGGACCGGATGGG
TCGTGCATCGAGTGTGCCGGGGCACATGCATGGAAAGTTAATGCAGAATG
GCAGGGTGGGGATGGAGTGATCAGCAAGAAGGAAGTGAAAAAAGCGAGGC
AGGAAGATGACCTCTCTGTAAATCAAAATGAAATATGAAACAATTTGGCC
ATG
back to top

protein sequence of NO11G01410.1

>NO11G01410.1-protein ID=NO11G01410.1-protein|Name=NO11G01410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=188bp
MERLPDYVLVADAQVDLNSLVQRVGDPGAGAIATFLGVTRDNFNGKPVVR
LEYEGYVPMAEKVMHAICVEIRNRWAVLSVAMEHRLGTCPVGEASVGIAI
SSPHRREALEAVAFAIDAIKANVPVWKKEFYADGSYHKGPDGSCIECAGA
HAWKVNAEWQGGDGVISKKEVKKARQEDDLSVNQNEI*
back to top
Synonyms
Publications