NO11G01410.1, NO11G01410.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G01410.1
Unique NameNO11G01410.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length876
Alignment locationchr11:483872..484824 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:483872..484824 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO11G01410.1 vs.
Match: EWM25081.1 (molybdenum cofactor synthesis isoform cra_a [Nannochloropsis gaditana])

HSP 1 Score: 252.3 bits (643), Expect = 1.200e-63
Identity = 120/167 (71.86%), Postives = 139/167 (83.23%), Query Frame = 0
Query:    7 YVLVADAQVDLNSLVQRVGDPGAGAIATFLGVTRDNFNGKPVVRLEYEGYVPMAEKVMHAICVEIRNRWAVLSVAMEHRLGTCPVGEASVGIAISSPHRREALEAVAFAIDAIKANVPVWKKEFYADGSYHKGPDGSCIECAGA----HAWKVNAEWQGGDGVISKK 170
            YV V D+++DLN+L+ +V D GAGAIATFLGVTRDNF GK VVRL+YEGYVPMAE VMH+I  E+R+RW VLS+AMEHR+G CPVGE SV IAISS HRREALEAVAFAID+IK NVP+WKKE YADGSYH+GPDGS +EC G+     AWK N EW+GGD  ISK+
Sbjct:   41 YVRVTDSKLDLNTLIMKVEDTGAGAIATFLGVTRDNFQGKRVVRLDYEGYVPMAENVMHSIASEVRSRWEVLSIAMEHRIGVCPVGEPSVVIAISSAHRREALEAVAFAIDSIKGNVPIWKKEIYADGSYHRGPDGSSVECGGSPVVKSAWKKNVEWEGGDENISKR 207          
The following BLAST results are available for this feature:
BLAST of NO11G01410.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25081.11.200e-6371.86molybdenum cofactor synthesis isoform cra_a [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G01410NO11G01410Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G01410.1NO11G01410.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G01410.1.cds1NO11G01410.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01410.1.cds2NO11G01410.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G01410.1 ID=NO11G01410.1|Name=NO11G01410.1|organism=Nannochloropsis oceanica|type=mRNA|length=876bp
ATCCGACTGCACTGCGGGTGGCAATGACTCCTCCGATCATGGGCCGAGGA
GGGTCCAGAGCGGTCGCCGATGAATGAAGGCTTGTACCAGGTCGATTGAC
AATGAAACCCTGAGCATTGCATGCAAGCGTTTTGAGGCTGCCTGGCATAC
TGGCGATTGAAGTGGGTATCGACACTTTTGGGAGAGTGTTTAACTGATCT
CACACAACCTCCCCACCACCACTGTCCACATCACTACAGCGTCCCTCTCC
CTGATACCCGTGAGGACGATAACGACTAGAGAGCAGCAGCAAACGCAATG
GAGCGGTTACCAGACTATGTCCTGGTCGCTGACGCTCAGGTGGATTTGAA
TTCGCTGGTTCAGAGGGTTGGGGACCCTGGGGCAGGGGCCATTGCCACTT
TCCTGGGCGTAACACGGGACAATTTCAATGGCAAGCCCGTCGTCCGCCTT
GAGTACGAGGGCTACGTGCCCATGGCTGAAAAGGTGATGCATGCAATTTG
CGTCGAGATCCGAAACCGGTGGGCCGTCCTTTCCGTTGCCATGGAGCACC
GGCTTGGCACTTGCCCAGTAGGGGAGGCAAGCGTGGGAATCGCAATTTCA
TCTCCGCATCGGCGCGAAGCTCTGGAAGCAGTTGCATTTGCGATAGATGC
CATCAAGGCGAATGTCCCTGTATGGAAGAAGGAGTTCTACGCTGATGGCA
GCTACCACAAAGGACCGGATGGGTCGTGCATCGAGTGTGCCGGGGCACAT
GCATGGAAAGTTAATGCAGAATGGCAGGGTGGGGATGGAGTGATCAGCAA
GAAGGAAGTGAAAAAAGCGAGGCAGGAAGATGACCTCTCTGTAAATCAAA
ATGAAATATGAAACAATTTGGCCATG
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protein sequence of NO11G01410.1

>NO11G01410.1-protein ID=NO11G01410.1-protein|Name=NO11G01410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=188bp
MERLPDYVLVADAQVDLNSLVQRVGDPGAGAIATFLGVTRDNFNGKPVVR
LEYEGYVPMAEKVMHAICVEIRNRWAVLSVAMEHRLGTCPVGEASVGIAI
SSPHRREALEAVAFAIDAIKANVPVWKKEFYADGSYHKGPDGSCIECAGA
HAWKVNAEWQGGDGVISKKEVKKARQEDDLSVNQNEI*
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mRNA from alignment at chr11:483872..484824+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G01410.1 ID=NO11G01410.1|Name=NO11G01410.1|organism=Nannochloropsis oceanica|type=mRNA|length=953bp|location=Sequence derived from alignment at chr11:483872..484824+ (Nannochloropsis oceanica)
ATCCGACTGCACTGCGGGTGGCAATGACTCCTCCGATCATGGGCCGAGGA GGGTCCAGAGCGGTCGCCGATGAATGAAGGCTTGTACCAGGTCGATTGAC AATGAAACCCTGAGCATTGCATGCAAGCGTTTTGAGGCTGCCTGGCATAC TGGCGATTGAAGTGGGTATCGACACTTTTGGGAGAGTGTTTAACTGATCT CACACAACCTCCCCACCACCACTGTCCACATCACTACAGCGTCCCTCTCC CTGATACCCGTGAGGACGATAACGACTAGAGAGCAGCAGCAAACGCAATG GAGCGGTTACCAGACTATGTCCTGGTCGCTGACGCTCAGGTGGATTTGAA TTCGCTGGTTCAGAGGGTTGGGGACCCTGGGGCAGGGGCCATTGCCACTT TCCTGGGCGTAACACGGGACAATTTCAATGGCAAGCCCGTCGTCCGCCTT GAGTACGAGGGCTACGTGCCCATGGCTGAAAAGGTGATGCATGCAATTTG CGTCGAGGTAAGAACGTGCGTGCATTTGGGTGTCATCATCAGGTTGCAGC CTTATCATTGTCCCTCTCCTTCCCACCCCTCTAGATCCGAAACCGGTGGG CCGTCCTTTCCGTTGCCATGGAGCACCGGCTTGGCACTTGCCCAGTAGGG GAGGCAAGCGTGGGAATCGCAATTTCATCTCCGCATCGGCGCGAAGCTCT GGAAGCAGTTGCATTTGCGATAGATGCCATCAAGGCGAATGTCCCTGTAT GGAAGAAGGAGTTCTACGCTGATGGCAGCTACCACAAAGGACCGGATGGG TCGTGCATCGAGTGTGCCGGGGCACATGCATGGAAAGTTAATGCAGAATG GCAGGGTGGGGATGGAGTGATCAGCAAGAAGGAAGTGAAAAAAGCGAGGC AGGAAGATGACCTCTCTGTAAATCAAAATGAAATATGAAACAATTTGGCC ATG
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Coding sequence (CDS) from alignment at chr11:483872..484824+

>NO11G01410.1 ID=NO11G01410.1|Name=NO11G01410.1|organism=Nannochloropsis oceanica|type=CDS|length=564bp|location=Sequence derived from alignment at chr11:483872..484824+ (Nannochloropsis oceanica)
ATGGAGCGGTTACCAGACTATGTCCTGGTCGCTGACGCTCAGGTGGATTT
GAATTCGCTGGTTCAGAGGGTTGGGGACCCTGGGGCAGGGGCCATTGCCA
CTTTCCTGGGCGTAACACGGGACAATTTCAATGGCAAGCCCGTCGTCCGC
CTTGAGTACGAGGGCTACGTGCCCATGGCTGAAAAGGTGATGCATGCAAT
TTGCGTCGAGATCCGAAACCGGTGGGCCGTCCTTTCCGTTGCCATGGAGC
ACCGGCTTGGCACTTGCCCAGTAGGGGAGGCAAGCGTGGGAATCGCAATT
TCATCTCCGCATCGGCGCGAAGCTCTGGAAGCAGTTGCATTTGCGATAGA
TGCCATCAAGGCGAATGTCCCTGTATGGAAGAAGGAGTTCTACGCTGATG
GCAGCTACCACAAAGGACCGGATGGGTCGTGCATCGAGTGTGCCGGGGCA
CATGCATGGAAAGTTAATGCAGAATGGCAGGGTGGGGATGGAGTGATCAG
CAAGAAGGAAGTGAAAAAAGCGAGGCAGGAAGATGACCTCTCTGTAAATC
AAAATGAAATATGA
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Synonyms
Publications