NO11G01270, NO11G01270 (gene) Nannochloropsis oceanica

Overview
NameNO11G01270
Unique NameNO11G01270
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2704
Alignment locationchr11:441297..444000 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:441297..444000 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR016024ARM-type_fold
Homology
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BLAST of NO11G01270 vs. NCBI_GenBank
Match: EWM25095.1 (hypothetical protein Naga_100016g9 [Nannochloropsis gaditana])

HSP 1 Score: 571.6 bits (1472), Expect = 3.900e-159
Identity = 363/828 (43.84%), Postives = 492/828 (59.42%), Query Frame = 0 
Query:    1 MSEKLLAQLQTGKLPKPAKLLAALRELCQQLNQDTDGTSFTPQIAAALAAFLPQLRDADNDSRKLVRLVHFFVTEIAARYAGAKDVVARLLEAVLDDLHVATYFPRQLIAIQSIGILSIHYYTQNALNVVIQQEKVYQVTLELVRQSNGDLQHLPFSLIRSGGG-DASNKRKKDLTECLALSGALVLMIRHVIASTRNERCPPEWMAYLYTVCFATEGVGVHIDGARAGHAALLDLASKSESIRAEIAVHLSSNKMLLPCTAIQDALACISYLRLCACVAFSTTTGDSNDMREKFFRVLLEGALTEKRLRVTLEAITLLFQPLNQENMRTDFKRLIDVGAIARLLCHALQQTPLHSTTMHAILRATHLVARWLVYVHEEDVEHAAADLSLVMLATGGETHR--VQTVLLKQLREMVLHMAGQLESRQLLSAALRQAVLRSLVWLVPSMPEPTLTSNNTNVMYGSCTAKLFSALSLSGTTSLSGTGRGGRAAVAAAIPSPPGTSPEAAMWQRFEKQLCEAPANLTDAQLARLLKEGIERLKVQAASPASAPTRLVLVPLLLSTAFNYVVAVPSDNISEVVFKVWESLLKLLSTQPAYQTKVLVAVCQTLDYAQCPSQGNGTDASSTADAASIVRHLHVWQAQGQPKAPTFAYRRAACIRMVRLACWFLGEHAFHFPSDRLGVIVFRLQTLGLFSDCFTRPMALQALCKIAVRCDSLDLKVRLYEYLHGLEKADFDIALEGRNPARKESRSKPPSGMAVAAVGETHLPQEQQQALLSSFDAHCGGVLN-VRATLVHLRGVFRDELRSMGSDPPADGAAAAAVTDTSLFLV 825
            MSE L+A+L+ GK PK AK+L  LRE   QL QDT+  S +   A ALA  LP+LRD DNDSRKL RLV+FF+TEI A +A   D  A  LEAVL D   ATYFPRQ++A+QS+G+LS            +++E+VY  TL LV++S  DLQ LP SL + GG    S K+ K+  E LALSGAL LM+RHV+     + CPPEWMAY+YTVC A   +  + DG RA HAAL +LA KS+S RAE+A+HL SNK +   +A+ D LAC+ YLR CAC+A ST         E FF+VL + AL +KRL+V+LEAI LL+Q    E       R  DV AIA++L HA+++     TT+HA+  A   +A+WLV    E       + +L+  A  GE     +   +LK+LR  +   A  LES + LS  LR ++L++L+WLVPS+P  +  SN +N  Y S  +  FSALSLS         + G   V +++ S   TS E+ +WQ  E++L EAPA  TD QL  LL+EG +R+ V+A S +S P+  +L  LL  T+  Y    P+D ++E + K WE LL    + P  Q ++L A+   LD   CP   +G   ++     + +R   VWQ QGQ + P+   +RA   R++RLA WFLGEHA  F +++LGVIV RL+TL LFSDCFT+  A+QALCK+AV C+  D++V LYE+L     AD    L G N             + ++  GE H  ++Q Q L        G   + V ATL HLRGVFRD L+S+G DPP D  + +++   SLF+V
Sbjct:    1 MSEILMAKLREGKPPKNAKILNILREQVHQLGQDTETISHSLDFAQALAELLPRLRDTDNDSRKLARLVYFFITEICAHHARTCD-AAIFLEAVLADFRSATYFPRQVVAVQSLGLLSXXXXXXXXXXXXLRREEVYLETLSLVQKSCSDLQRLPPSLEKLGGEIVGSGKKTKEFAEILALSGALSLMMRHVL--KHFDCCPPEWMAYMYTVCHAPGSLRANDDGTRACHAALWELALKSKSARAEMAIHLLSNKKIHSSSALSDILACVFYLRTCACIASSTGQDVPPATTEAFFQVLKDAALKDKRLQVSLEAINLLYQFSWHEFGTLSSTRASDVPAIAKVLQHAVEEPAAQLTTLHAVFGAMRTMAKWLVRYQYEG--EKGDEFTLIAQADIGEEDAGYMHAGVLKRLRNTITSRADALESSKTLSTQLRLSLLQTLIWLVPSLPRASFPSNASN-RYNSRIS--FSALSLS---------QPGGEPVLSSLTS-LSTSDESQLWQDLERRLAEAPAYFTDVQLGLLLEEGRDRMSVEAVSSSSGPSSRILASLLSRTSRIYFNVAPTDAMAEYLIKTWEGLLSPRPSDPVIQAELLAAIFCVLDLDFCPKPASG---NTHIYFKAGIRPQAVWQTQGQVQEPSCTQKRAIYARLLRLASWFLGEHALRFTTEQLGVIVLRLKTLSLFSDCFTQYEAVQALCKVAVCCEQADIQVELYEFLRDFTCADLKSPLTGINE------------VGMSTFGEAHENEDQAQKLSFGVGNGFGSQEDCVAATLEHLRGVFRDHLKSLGLDPPGD-PSQSSIVGVSLFVV 794
The following BLAST results are available for this feature:
BLAST of NO11G01270 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25095.13.900e-15943.84hypothetical protein Naga_100016g9 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL116nonsL116Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR019ngnoR019Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002142NSK002142Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G01270.1NO11G01270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|50458gene_5008Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100016g9gene5407Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G01270.1NO11G01270.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G01270 ID=NO11G01270|Name=NO11G01270|organism=Nannochloropsis oceanica|type=gene|length=2704bp
ATGAGTGAGAAGCTTCTGGCGCAACTGCAGACGGGGAAACTGCCCAAGCC
CGCCAAACTCCTTGCTGCTTTGCGGGAGCTTTGTCAGCAACTTAACCAGG
ACACCGACGGTACTTCATTTACCCCGCAGATTGCCGCGGCCTTGGCGGCG
TTCTTACCACAGCTTCGCGACGCAGACAACGACAGTCGTAAGCTCGTCCG
CCTGGTGCATTTCTTTGTCACCGAGATCGCGGCGCGCTACGCAGGAGCAA
AGGATGTGGTGGCGCGTCTGCTGGAAGCAGTCTTGGATGACCTGCATGTG
GCGACATATTTTCCCAGGCAACTTATTGCCATCCAATCGATCGGTATTCT
CTCCATCCATTACTATACTCAGAACGCTTTGAATGTGGTGATTCAGCAGG
AAAAAGTCTACCAGGTGACACTCGAGCTCGTACGACAGTCGAACGGTGAT
TTGCAGCATCTGCCCTTTTCCTTGATTAGAAGCGGCGGCGGCGATGCAAG
TAATAAGCGAAAAAAAGATCTCACGGAATGTCTGGCCTTATCAGGAGCGC
TAGTGCTTATGATTCGGCATGTGATTGCTTCCACAAGAAATGAGAGGTGT
CCTCCGGAGTGGATGGCGTACCTTTACACAGTCTGCTTTGCAACCGAGGG
CGTTGGGGTGCATATCGACGGCGCCCGCGCAGGCCATGCCGCACTTTTGG
ATCTCGCGTCAAAATCAGAGAGTATCAGAGCTGAAATAGCTGTACATCTC
TCTTCAAATAAAATGCTACTgtatgttgtggcgggaagtgaggggggagg
gggaagagatgtgtaacatggaaggatgaacgaaggagatgtgtatgcta
ctgacgttctttaggatcctttatatgcgtcccttttgctcacatataat
gcatagtgcctctttgcctcatcttgaactcaaaagatacttgtttcttt
catccttcccacaccgcgataccatacacagCCCTTGTACCGCTATCCAG
GACGCCCTTGCCTGCATTTCCTACCTCCGCCTTTGCGCCTGTGTCGCTTT
TTCCACCACCACTGGAGACTCCAATGACATGAGAGAAAAGTTTTTCCGTG
TCCTGCTAGAAGGGGCTTTGACAGAGAAGCGCCTGCGCGTGACCCTTGAG
GCCATTACCCTTCTCTTCCAACCTTTGAATCAGGAAAACATGCGCACCGA
TTTCAAGAGATTGATTGATGTCGGTGCCATTGCGCGTCTTCTGTGTCACG
CCCTCCAGCAAACGCCACTTCACTCCACGACTATGCACGCCATCCTCCGC
GCGACCCATCTGGTAGCCAGATGGTTGGTGTATGTCCATGAAGAGGATGT
GGAGCATGCCGCTGCCGACTTGTCTTTGGTGATGTTGGCCACGGGTGGAG
AGACGCACCGTGTGCAAACAGTCCTCTTGAAGCAGTTGAGAGAGATGGTA
TTGCACATGGCGGGCCAGCTCGAGTCCCGTCAGTTGTTATCCGCGGCGTT
GCGACAAGCCGTGCTAAGATCCCTGGTTTGGCTCGTGCCTTCTATGCCGG
AGCCCACGCTGACCAGCAACAACACCAATGTCATGTACGGCAGCTGCACA
GCCAAATTATTTTCCGCTTTATCCTTGTCGGGAACAACTTCTTTGTCAGG
CACGGGGAGGGGAGGGAGAGCAGCAGTAGCAGCAGCTATCCCATCTCCCC
CGGGCACTTCGCCCGAGGCGGCCATGTGGCAGCGATTTGAAAAACAGTTA
TGCGAAGCCCCGGCAAACCTGACAGACGCTCAACTCGCACGTCTTTTAAA
AGAAGGGATTGAACGGCTTAAAGTACAGGCCGCCTCGCCGGCATCAGCAC
CAACACGCCTGGTTTTGGTGCCTTTGCTTCTGAGCACTGCGTTCAATTAT
GTGGTAGCCGTTCCGAGCGATAACATCTCCGAGGTGGTTTTCAAGGTGTG
GGAGTCTTTATTAAAATTGCTGTCTACACAGCCAGCCTACCAGACAAAGG
TGCTTGTCGCTGTCTGCCAAACACTTGACTACGCTCAATGTCCCAGCCAA
GGCAATGGCACGGACGCCTCTTCTACTGCTGATGCAGCTTCGATCGTCCG
TCACCTCCACGTGTGGCAGGCACAAGGTCAGCCAAAGGCACCTACGTTCG
CTTACCGACGTGCTGCCTGTATTCGTATGGTGCGTCTCGCCTGTTGGTTC
TTGGGGGAGCACGCTTTTCACTTTCCTTCTGACCGCCTGGGCGTGATTGT
CTTTCGCCTCCAGACACTAGGTCTTTTTTCTGATTGCTTTACCAGGCCTA
TGGCCCTGCAGGCACTGTGTAAGATTGCCGTGCGCTGCGATAGTTTAGAC
CTGAAGGTTAGATTGTATGAGTATTTGCACGGGCTTGAGAAGGCCGATTT
TGACATCGCTCTGGAGGGAAGAAATCCAGCTCGAAAAGAAAGCAGAAGTA
AGCCTCCTTCTGGAATGGCGGTGGCTGCAGTTGGAGAGACGCATCTCCCT
CAGGAGCAACAACAAGCGTTGTTGTCTTCTTTTGATGCGCATTGCGGAGG
AGTGCTTAATGTACGTGCGACGTTAGTGCACCTTCGAGGTGTGTTTAGAG
ATGAGCTTCGGTCTATGGGAAGTGATCCTCCGGCAGACGGAGCTGCTGCT
GCAGCAGTGACGGACACATCTCTTTTCTTGGTGACTGAAGGCCAAGGGAA
TTGA
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protein sequence of NO11G01270.1

>NO11G01270.1-protein ID=NO11G01270.1-protein|Name=NO11G01270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=831bp
MSEKLLAQLQTGKLPKPAKLLAALRELCQQLNQDTDGTSFTPQIAAALAA
FLPQLRDADNDSRKLVRLVHFFVTEIAARYAGAKDVVARLLEAVLDDLHV
ATYFPRQLIAIQSIGILSIHYYTQNALNVVIQQEKVYQVTLELVRQSNGD
LQHLPFSLIRSGGGDASNKRKKDLTECLALSGALVLMIRHVIASTRNERC
PPEWMAYLYTVCFATEGVGVHIDGARAGHAALLDLASKSESIRAEIAVHL
SSNKMLLPCTAIQDALACISYLRLCACVAFSTTTGDSNDMREKFFRVLLE
GALTEKRLRVTLEAITLLFQPLNQENMRTDFKRLIDVGAIARLLCHALQQ
TPLHSTTMHAILRATHLVARWLVYVHEEDVEHAAADLSLVMLATGGETHR
VQTVLLKQLREMVLHMAGQLESRQLLSAALRQAVLRSLVWLVPSMPEPTL
TSNNTNVMYGSCTAKLFSALSLSGTTSLSGTGRGGRAAVAAAIPSPPGTS
PEAAMWQRFEKQLCEAPANLTDAQLARLLKEGIERLKVQAASPASAPTRL
VLVPLLLSTAFNYVVAVPSDNISEVVFKVWESLLKLLSTQPAYQTKVLVA
VCQTLDYAQCPSQGNGTDASSTADAASIVRHLHVWQAQGQPKAPTFAYRR
AACIRMVRLACWFLGEHAFHFPSDRLGVIVFRLQTLGLFSDCFTRPMALQ
ALCKIAVRCDSLDLKVRLYEYLHGLEKADFDIALEGRNPARKESRSKPPS
GMAVAAVGETHLPQEQQQALLSSFDAHCGGVLNVRATLVHLRGVFRDELR
SMGSDPPADGAAAAAVTDTSLFLVTEGQGN*
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Synonyms
Publications