NO11G01220, NO11G01220 (gene) Nannochloropsis oceanica

Overview
NameNO11G01220
Unique NameNO11G01220
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4226
Alignment locationchr11:432217..436442 +

Link to JBrowse

Properties
Property NameValue
DescriptionPas pac sensor hybrid histidine kinase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:432217..436442 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0009058biosynthetic process
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
GO:0016301kinase activity
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR035965PAS-like_dom_sf
IPR036638HLH_DNA-bd_sf
IPR013767PAS_fold
IPR000014PAS
IPR011598bHLH_dom
Homology
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BLAST of NO11G01220 vs. NCBI_GenBank
Match: XP_005856293.1 (pas pac sensor hybrid histidine kinase [Nannochloropsis gaditana CCMP526] >EKU20073.1 pas pac sensor hybrid histidine kinase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 417.5 bits (1072), Expect = 5.300e-113
Identity = 319/410 (77.80%), Postives = 340/410 (82.93%), Query Frame = 0 
Query:    1 MSEIDSLFGALGDTGDVDADLSILEALCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINEQIQSLRALLEASGLNTKKDKFSILKNTTEYLKKLKLLLNKSQAQIQALVXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVPLALPKAGGVEDTKYYVDVDPNVTQGAFAGRDVGGDDGGRVPQAGTALEMMIQRPPIAPGTVAESGSWAPNKKSADYALMFQNASIAMAVASLDGNFVDCNGAFSIISGYNNREVLQRSVFDLTPAEDCQELMSIVGKMMESPAESAKHFWKRCCFENRDCHCFVSMWLVRKASGEPVYFQCAVLPLEDYPMSSKSVTYDASS---QGKELA-ERGEGEDGGTVHAIEGQEEVQVSEANTLLQP 407
            MSEIDSLF ALG+TGDVDADLSILEALC       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   INEQIQSLR+LLEASGLNTKKDKFSILKNTTEYLKKLKLLLNKSQ       XXXXXXXXXXXXXXXXXXXXXXXXXXXXT  + +     + DTKYYV+VD N      AG++      G +P +G AL MMIQRPPIAPGT+ E+GSWAPNKKSADYALMFQNASIAMAVASLDG FVDCN AFSIISGY+N EVLQRSVFDLTPAEDCQELM IVGKMMESPAESAKHFWKRCCFENRDCHCFVSMWLVRKASGEPV+FQCAVLPLEDYPM+SKSVT+DASS    G  +A   GEGE       +  ++ V+ SEAN LLQP
Sbjct:    1 MSEIDSLFSALGETGDVDADLSILEALCGLEGVDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRRINEQIQSLRSLLEASGLNTKKDKFSILKNTTEYLKKLKLLLNKSQ---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSIMPVSPGNALGDTKYYVEVDSN------AGKE---SSNGSLP-SGPALGMMIQRPPIAPGTLVEAGSWAPNKKSADYALMFQNASIAMAVASLDGKFVDCNSAFSIISGYSNGEVLQRSVFDLTPAEDCQELMGIVGKMMESPAESAKHFWKRCCFENRDCHCFVSMWLVRKASGEPVFFQCAVLPLEDYPMASKSVTHDASSVPDDGNAIAGPAGEGEG-----YLALEDRVETSEANALLQP 392
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BLAST of NO11G01220 vs. NCBI_GenBank
Match: EWM25109.1 (hypothetical protein Naga_100016g14 [Nannochloropsis gaditana])

HSP 1 Score: 417.5 bits (1072), Expect = 5.300e-113
Identity = 320/410 (78.05%), Postives = 341/410 (83.17%), Query Frame = 0 
Query:    1 MSEIDSLFGALGDTGDVDADLSILEALCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINEQIQSLRALLEASGLNTKKDKFSILKNTTEYLKKLKLLLNKSQAQIQALVXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVPLALPKAGGVEDTKYYVDVDPNVTQGAFAGRDVGGDDGGRVPQAGTALEMMIQRPPIAPGTVAESGSWAPNKKSADYALMFQNASIAMAVASLDGNFVDCNGAFSIISGYNNREVLQRSVFDLTPAEDCQELMSIVGKMMESPAESAKHFWKRCCFENRDCHCFVSMWLVRKASGEPVYFQCAVLPLEDYPMSSKSVTYDASS---QGKELA-ERGEGEDGGTVHAIEGQEEVQVSEANTLLQP 407
            MSEIDSLF ALG+TGDVDADLSILEALC      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   INEQIQSLR+LLEASGLNTKKDKFSILKNTTEYLKKLKLLLNKSQ       XXXXXXXXXXXXXXXXXXXXXXXXXXXXT  + +     + DTKYYV+VD N      AG++      G +P +G AL MMIQRPPIAPGT+ E+GSWAPNKKSADYALMFQNASIAMAVASLDG FVDCN AFSIISGY+N EVLQRSVFDLTPAEDCQELM IVGKMMESPAESAKHFWKRCCFENRDCHCFVSMWLVRKASGEPV+FQCAVLPLEDYPM+SKSVT+DASS    G  +A   GEGE       +  ++ V+ SEAN LLQP
Sbjct:   76 MSEIDSLFSALGETGDVDADLSILEALCGLEGVDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRRINEQIQSLRSLLEASGLNTKKDKFSILKNTTEYLKKLKLLLNKSQ---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSIMPVSPGNALGDTKYYVEVDSN------AGKE---SSNGSLP-SGPALGMMIQRPPIAPGTLVEAGSWAPNKKSADYALMFQNASIAMAVASLDGKFVDCNSAFSIISGYSNGEVLQRSVFDLTPAEDCQELMGIVGKMMESPAESAKHFWKRCCFENRDCHCFVSMWLVRKASGEPVFFQCAVLPLEDYPMASKSVTHDASSVPDDGNAIAGPAGEGEG-----YLALEDRVETSEANALLQP 467
[Close]
BLAST of NO11G01220 vs. NCBI_GenBank
Match: OEU12638.1 (hypothetical protein FRACYDRAFT_172104 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 68.6 bits (166), Expect = 6.000e-8
Identity = 43/121 (35.54%), Postives = 69/121 (57.02%), Query Frame = 0 
Query:  201 GDDGGRVPQAGTALEMMIQRP--PIA--PGTVAES-----GSWAPNK-KSADYALMFQNASIAMAVASLDGNFVDCNGAFSIISGYNNREVLQRSVFDLTPAEDCQELMSIVGKMMESPAE 312
            G+ GG  P++     MM  +P  PIA  P + A+S     GS  P+K + +DY  +F + +I MA+AS+ G F+DCN  F  IS Y  +E+   +VF+LT  +D Q    ++ +M+ +P +
Sbjct:  131 GNFGGVPPKSA----MMYHQPSGPIADEPTSSADSASSLNGSTLPSKIEESDYRQVFNSCTIGMAIASMGGAFIDCNKLFCNISNYTKQEICSMTVFNLTSRQDLQSAFDLISQMLSAPLD 247
[Close]
BLAST of NO11G01220 vs. NCBI_GenBank
Match: WP_107913472.1 (PAS domain S-box protein [Luteibacter sp. OK325] >PTR32476.1 PAS domain S-box-containing protein/diguanylate cyclase (GGDEF)-like protein [Luteibacter sp. OK325])

HSP 1 Score: 65.5 bits (158), Expect = 5.100e-7
Identity = 57/209 (27.27%), Postives = 104/209 (49.76%), Query Frame = 0 
Query:  182 YVDVDPNVT-----QGAFAGRDVGGDDGGRVPQAGTALEM----MIQRPPIAPGTVAESGSWAPNKKSAD--YALMFQNASIAMAVASLDGNFVDCNGAFSIISGYNNREVLQRSVFDLTPAEDCQELMSIVGKMMESPAESAKHFWKRCCFENRD---CHCFVSMWLVRKASGEPVYFQCAVLPLEDYPMSSKSVTYDASSQGKELAE 377
            Y  ++P V+     +   A R++  DDG R  QA    ++    +I+   I    ++         K ++  ++L F++A+I MA+   DG ++  N A S++ GY+ +E+L  +  D+T  +D    +S+V K++ +   ++ H  KR  +  RD    H  +++ LVR   GEP+YF   V+ + D     +    DA  + +ELAE
Sbjct:   68 YARIEPGVSAALAGEPMVADREIRRDDGKRHAQATFTPDVGEHGVIRGVSIILADISGRHVLEARLKESERRFSLAFRHAAIGMALVQPDGRWMQVNEALSVMLGYSEQELLTSAYQDITHPDDLATDLSLVKKVL-AGERASYHLEKR--YLRRDGQVVHALLTVSLVRDEHGEPLYFISQVVDISD-----RKAFEDALFRERELAE 268
The following BLAST results are available for this feature:
BLAST of NO11G01220 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
XP_005856293.15.300e-11377.80pas pac sensor hybrid histidine kinase [Nannochlor... [more]
EWM25109.15.300e-11378.05hypothetical protein Naga_100016g14 [Nannochlorops... [more]
OEU12638.16.000e-835.54hypothetical protein FRACYDRAFT_172104 [Fragilario... [more]
WP_107913472.15.100e-727.27PAS domain S-box protein [Luteibacter sp. OK325] >... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL116nonsL116Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL114nonsL114Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR021ngnoR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR019ngnoR019Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002146NSK002146Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G01220.1NO11G01220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100016g14gene5403Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G01220.1NO11G01220.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G01220 ID=NO11G01220|Name=NO11G01220|organism=Nannochloropsis oceanica|type=gene|length=4226bp
CCCTCCCTCTCCTCCAACCCTATGCCTTGAGCTTCTGAAAGGCCTTCTCA
AAGTCCGCGGACAGCTTCGCCTCGTCAACCTTCGGCCTGGGTGGCTCATT
TATCATCACTACCACCTTGCGTGTCTTAAACGGTTCAGAGGCCTCCTTTA
ATGCCACTGGCAAGTCCGACAACGGGTGTCGTTCCACCCACAGTTGCAAA
GCCCCCGACCTGAACATGCTTGCGGCCGACTCAATTTCCGACGCCGTCGC
CTTTTTTAAACTGCTCTCCCCCGCTGTTGCGTACAAGTTGGCCTTCAGTC
CCATCCCGACCTTACCCACCACCGCTGAGCCTGCCTCAGTGGCCGCCAGC
GCTAGACTAGGCTTCGGCAGCTCCGACAGGATTTTTGCGAACCCGGCATT
ACCTGTGGCATAGGTATCCTTGACCACCACATCCCCACCCAAATCCTTGA
TCAAACCCGCCTTATCAAAAAACCCTGGGCCATCCGTAACAATGTTAATC
GTGCCCACACCTCGAGCCTGGGCTATCTGAACGACGGCCAACCCCACCGG
CGAGTCCGCGTCCGCCTGCAACACATACTCCCCACCCTTGACACCCGACA
GCAACCGCAAGGCCGTCAACGCCGTGCCCATACAGGCAGCAAATTCTACA
GGAATGTCTGAGGGGACCTTGGCCAGGTCAACTTCCTTGGCTTTGGCAGC
ACTGCGGAACGTTGGTACCGAGCCCGATGTCGGCACCACCCAATCATGGA
CTGCCAAGTCTTTGACCTTGCTCCCCACCGCCGTCACGATCCCCACACCC
TCCGCACCTGCCGGACTCTTGCTGTCCATGTCTGCCGCCGTGACGGGCGC
GGCGAGGATGCTAAGCGCTACCTCGTTGTCCCCCAACGCCGCAGCGGATG
TCGACAGGCCTCGATAAGCAGCGGCGGCCGTGGCAGCGGTTGATCTCTGG
CAAGAAGGCACACCCCTTCGTGCCAACAGCGAGGCCACTACCACGCGGAA
CGACGCCATAGGATTATCCTGTGCGCGTGTGTGTTGTGTGTGCACGTTTG
TGATCGTGCTTGGTTGAGATTGGAAGTATATTGCCTGGCTGCATGTTCAT
CATCTTCTTGCACACCCAAGCAAAGCCGGGCGACATGCCGTCAACACGAC
ATGCCTTGCCACATGACACAAATGCAGGGCATTTTCAAAAGCTCAAAAGC
TGCCAGCTCGTAGGGTGGCCACCATGGCACCAATCTTAGGAAGTGTCCAC
GCGGGCAAATCATGACCCGAGAAATAGAGGGGGTCCTCGGCATGAGTCGA
ATGGAACGAATGGAACTCAGACTCGATTGTCTCTCTGCCTCCTCCTGCCT
GCCTCCGCTGCTTGGTGTCCTTCGTTCCATGACCGAATCCCAGAGCGCCT
GACGTACCACGCCCACATTCTTACCCTTATCATACTCATCCTACCTCCAG
AGAAACGGGCTCAGGGAGCACCGGCGCGCAATCCAGCTCTCTCAAACCTT
AGTTGCCTATTCCACCTGAGCATTCGGCCCCCGTTCTTGTTCTTGAGCTT
TCGTCAATCCACCCGGCAAGCCTCCGTACCGACTGAGCACTTGAGCAACA
GGTGCTTCTTGTGCCGCTTCCCCACCTTTCATCATTGTGACCCCGGGCGA
CATGAGTGAGATCGATTCTCTCTTTGGTGCCCTTGGGGACACAGGCGACG
TTGACGCAGgtaagaactaaaggcccagggggaggcttggcaacgcaagg
aatggacgaccggcacggccacccttactcgaaccaaccacggaagcaaa
cgcacacaaaagttaagaaaaataattgttcaccagagcaggtaatcaca
cgagttcgcggccttcccccctctcccattccccccttccccctcccccc
tcagATCTGAGCATACTGGAGGCCCTCTGCGGGCTTGAAGGTATCGATGC
CTCCGCTGCTGCGGCTGCAGCCGTGGAGGAGGAACAGTCGGACGAAGACG
AGGAGGACTCCTTCGATGGGGACGGACAGCCGCGTAAGAAGCGGGCACGT
CGCACCCGTTCAGAATTGAATGAAGTGGAGAAGCAACGCACCCGGCGAAT
CAATGAGCAAATCCAATCTTTGCGGGCTTTGCTGGAAGCCTCGGGGCTGA
ATACCAAGAAAGATAAATTCTCCATTCTGAAGAAgtacgtgctcgcgagg
gaggaaagaagggagcgatgggtgcctgggtgtgtgctagttacgtcggt
attactggtagtctcttgattcctagtgctcatcagcctttctctccttc
cctcccttcctttcccgtacccaaaccagCACTACCGAGTACCTGAAAAA
GTTGAAACTCCTCCTCAACAAATCGCAAGCTCAAATCCAGGCTTTAGTCG
CCAGCCGCCGAGTCGCGGCTGCAGCAAATGCAGCGTCAGCAGCAGCAGGA
GGGGGCATGGCCGCGGCACCTGCCCCTGTAGTTACTGTCCCACTTGCGTT
GCCCAAGGCCGGGGGAGTGGAGGATACCAAGTACTACGTGGATGTGGACC
CGAATGTGACCCAGGGGGCGTTCGCCGGAAGGGATGTCGGGGGGGATGAT
GGGGGAAGAGTGCCTCAGGCGGGCACGGCATTGGAGATGATGATTCAGAG
ACCTCCGATTGCTCCGGGTACGGTGGCGGAGTCGGGATCTTGGGCCCCGA
ACAAGAAAAGCGCGGACTATGCCCTGATGTTTCAGAACGCCTCCATTGCC
ATGGCGGTGGCGAGCCTGGACGGGAATTTCGTCGATTGCAATGGGGCGTT
TTCCATCATCTCCGGGTATAATAACAGGGAGGTGCTGCAGCGGTCGGTGT
TTGACTTGACCCCCGCGGAGGACTGCCAGGAATTGATGTCTATCGTGGGG
AAAATGATGGAGAGTCCTGCGGAGAGCGCGAAACACTTTTGGAAGCGCTG
TTGTTTCGAGAATCGTGACTGCCATTGTTTCGTGAGCATGTGGCTGGTGC
GGAAAGCTTCCGGAGAGCCGGTGTACTTCCAGTGTGCTGTCTTGCCCTTG
GAGGACTACCCCATGTCCAGCAAGTCTGTCACGTATGACGCAAGCTCGCA
GGGGAAAGAATTGGCGGAGAGGGGGGAAGGGGAAGACGGAGGGACGGTGC
ATGCGATTGAGGGCCAGGAGGAGGTGCAGGTGAGTGAGGCAAATACCCTG
TTGCAGCCGGAATTTCGCTGTGGGGAAGGAGAAGGAGAAGCAGCAATAGG
AAGAGGTGGAGGAGGACGGGAGGGCGATTTACAGTTTGAGTTGCCGGCGC
CGCGGTCGTCACAGTTCACAGAGAAAGGATTGGCCGTGGGAGCGTCTGGG
GAATGTCATGATAGGCCGTCGCCGTCCTCGTCGTCATGATTGCCGCAGGA
GCAGATGGATCCAGAGGGAAAGCACAAGGACCAAAGGAAGAGAGAAGGTG
GGAGAGAACACAACGCAAGTGGGAGAGGAAAAGGGAAGGACAATGCTGTC
CCAGCCCTCATTCGTTTTGCGCTGCCGGGGTATAGGCGGAAGAGCGAGCG
AGAGAGAGAGAGAGAGAGAAGGAAGATGTGTATATATGCGAACAGCGAGA
CGGTTAAATCAGAATGACGAGGACGAGGACGTCGAAAGTGAAAAAACAAG
CAGCAGAAAAGACATAATTGGACTTGCGGCCGATCACAAGAACGAAAGTG
TCAAGACTTAAGAGGCATCAAGAAGTAATCAAAAGGAGTAACTTCCATCA
GCAACGTGTGTGAGTAGTCAGTGAAGAGGCGGAGAGAGAAGTGACATATG
ACAGAACAAAAAGCGGCCAAGAAGAAAAAAGAAGAGAGGAGGGTAGAGGA
TATAGAGAAGGAAAGCGCTTTGGAACAAATCGAGAGGAGAGGGGGAGGAT
TATTGCATTCATGATGTGGTAAGGCGAAAGAAGAGCAAATCGCAGTTTTA
ATATTTTGAAAGAAGACCACGAGTAGGATGCGCGTGAGCGTACAAAGATG
ACGATCTGAGGAGCATCTTCAGCCGGCACAAGCAACATCAGCGAAAATCA
TTTTTTGGTCAAGGACACGCACATCCATTTCCACACTTCCCTGTGTTACC
AACTGGTCGGTCGTGCTTGCCTGCCACTCGTGGGTTTAGGGAGTCGCGGA
GATACGGGAGGAAATAGGGGAACAGTGAAGAGCAGGGGCAGGAACAACCG
ACCAAAATGGAAGTGAGAAAGAAATA
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protein sequence of NO11G01220.1

>NO11G01220.1-protein ID=NO11G01220.1-protein|Name=NO11G01220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=466bp
MSEIDSLFGALGDTGDVDADLSILEALCGLEGIDASAAAAAAVEEEQSDE
DEEDSFDGDGQPRKKRARRTRSELNEVEKQRTRRINEQIQSLRALLEASG
LNTKKDKFSILKNTTEYLKKLKLLLNKSQAQIQALVASRRVAAAANAASA
AAGGGMAAAPAPVVTVPLALPKAGGVEDTKYYVDVDPNVTQGAFAGRDVG
GDDGGRVPQAGTALEMMIQRPPIAPGTVAESGSWAPNKKSADYALMFQNA
SIAMAVASLDGNFVDCNGAFSIISGYNNREVLQRSVFDLTPAEDCQELMS
IVGKMMESPAESAKHFWKRCCFENRDCHCFVSMWLVRKASGEPVYFQCAV
LPLEDYPMSSKSVTYDASSQGKELAERGEGEDGGTVHAIEGQEEVQVSEA
NTLLQPEFRCGEGEGEAAIGRGGGGREGDLQFELPAPRSSQFTEKGLAVG
ASGECHDRPSPSSSS*
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Synonyms
Publications