NO11G01210, NO11G01210 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO11G01210 vs. NCBI_GenBank
Match: EWM25103.1 (ribosome recycling factor [Nannochloropsis gaditana]) HSP 1 Score: 338.6 bits (867), Expect = 1.600e-89 Identity = 191/237 (80.59%), Postives = 205/237 (86.50%), Query Frame = 0 Query: 1 MRAG--IYVLLGLVASTQAFFAPQ-AVRLVGAPAASCRS---SRRMAVTMEGEVAGVTKDAESKMKKCVDSTDNNLKAIRTGRASVTLLDRVMVDYFGSPTPLNQLAGISISGPQSLVVSPYDKSAFKLIETAILESNLGLNPNNEGSVLRLNIPPLTEDRRKVLSKQAKSVAEEGKVAVRNVRRDAVERVKKFEKDKAIGKDESATGQEALQKLTDKYGKQLDEMLKAKEKEIMTV 232 MRA + +LL L+ +T AFF + A L GAP S + +RRMAVTMEGEVA + K+AE KMKK VDSTDNNLK IRTGRASVTLLDRVMVDYFGSPTPLNQLAG+S+SGPQSLVVSPYDK AFKLIETAILES+LGLNPNNEGSVLRLNIPPLTEDRRK LSK AK +AEEGKVAVRNVRRDAVERVKK EKDK IGKDESA GQEALQKLTDKYGKQLDEMLK+KEKEIMTV Sbjct: 1 MRASPPLSLLLVLLTATDAFFMGRIASTLHGAPKCSYYTKAIARRMAVTMEGEVADIQKEAEIKMKKSVDSTDNNLKGIRTGRASVTLLDRVMVDYFGSPTPLNQLAGVSVSGPQSLVVSPYDKCAFKLIETAILESSLGLNPNNEGSVLRLNIPPLTEDRRKELSKMAKGLAEEGKVAVRNVRRDAVERVKKLEKDKTIGKDESANGQEALQKLTDKYGKQLDEMLKSKEKEIMTV 237
BLAST of NO11G01210 vs. NCBI_GenBank
Match: XP_002184049.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC44227.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 212.2 bits (539), Expect = 1.700e-51 Identity = 121/224 (54.02%), Postives = 156/224 (69.64%), Query Frame = 0 Query: 8 LLGLVASTQAFFAPQAVRLVGAPAASCRSSRRMAVTMEGEVAGVTKDAESKMKKCVDSTDNNLKAIRTGRASVTLLDRVMVDYFGSPTPLNQLAGISISGPQSLVVSPYDKSAFKLIETAILESNLGLNPNNEGSVLRLNIPPLTEDRRKVLSKQAKSVAEEGKVAVRNVRRDAVERVKKFEKDKAIGKDESATGQEALQKLTDKYGKQLDEMLKAKEKEIMTV 232 LLGLV S A F PQ +GA A C ++ AV V VT DA +M K VDS NL+++RTGRAS +LDRV VDY+G TPLNQ+A IS+ Q L + PYDK++ IETAI+ES+LGL NN+GS++R+NIP +TEDRRK + K KS+ EEGKVAVRN+RRD ++ +KK EK IG+DE GQ+ +QKLTDK K++DE++ AKEKE+M V Sbjct: 7 LLGLV-SLSAAFTPQPRISLGARAV-CGTTLYAAV---ASVKDVTDDASDRMAKSVDSVRLNLQSVRTGRASAQILDRVKVDYYGVETPLNQMATISVPSAQQLSIDPYDKTSLNNIETAIVESDLGLTTNNDGSIIRINIPSMTEDRRKEMLKLCKSIGEEGKVAVRNIRRDGLDTIKKMEKSSDIGEDEMKDGQDTMQKLTDKNVKEIDEVVGAKEKEVMKV 225
BLAST of NO11G01210 vs. NCBI_GenBank
Match: GAX24388.1 (ribosome recycling factor [Fistulifera solaris]) HSP 1 Score: 202.2 bits (513), Expect = 1.700e-48 Identity = 102/181 (56.35%), Postives = 134/181 (74.03%), Query Frame = 0 Query: 51 VTKDAESKMKKCVDSTDNNLKAIRTGRASVTLLDRVMVDYFGSPTPLNQLAGISISGPQSLVVSPYDKSAFKLIETAILESNLGLNPNNEGSVLRLNIPPLTEDRRKVLSKQAKSVAEEGKVAVRNVRRDAVERVKKFEKDKAIGKDESATGQEALQKLTDKYGKQLDEMLKAKEKEIMTV 232 VT DA+++M K V+S NL IRTGRAS ++LDR+ VDY+G TPLNQ+A IS+ Q L V PYDKS I+ AI ES+LG++PNN+G+++R+NIP LTEDRRK + KQ KS+ EEGKVAVRNVRRD ++ +KK EK IGKDE G + +QK+TDK K++DE++ KEKE+ V Sbjct: 47 VTDDADTRMSKSVESVKTNLATIRTGRASASILDRIKVDYYGVATPLNQMATISVPSAQQLAVDPYDKSTMNDIQKAIAESDLGVSPNNDGTIIRINIPELTEDRRKDMMKQCKSIGEEGKVAVRNVRRDGMDLIKKLEKAATIGKDEMQDGLDLMQKMTDKRVKEIDEIVAKKEKELSKV 227
BLAST of NO11G01210 vs. NCBI_GenBank
Match: GAX25995.1 (ribosome recycling factor [Fistulifera solaris]) HSP 1 Score: 200.3 bits (508), Expect = 6.600e-48 Identity = 101/184 (54.89%), Postives = 135/184 (73.37%), Query Frame = 0 Query: 48 VAGVTKDAESKMKKCVDSTDNNLKAIRTGRASVTLLDRVMVDYFGSPTPLNQLAGISISGPQSLVVSPYDKSAFKLIETAILESNLGLNPNNEGSVLRLNIPPLTEDRRKVLSKQAKSVAEEGKVAVRNVRRDAVERVKKFEKDKAIGKDESATGQEALQKLTDKYGKQLDEMLKAKEKEIMTV 232 V VT DA+++M K V+S NL IRTGRAS ++LDR+ VDY+G TPLNQ+A IS+ Q L V PYDKS I+ AI ES+LG++PNN+G+++R+NIP LTE+RRK + KQ KS+ EEGKVAVRN+RRD V+ +KK EK IGKDE G + +QK+TDK K++D+++ KEKE+ V Sbjct: 44 VKEVTDDADTRMSKSVESVKTNLATIRTGRASASILDRIKVDYYGVATPLNQMATISVPSAQQLAVDPYDKSTLNDIQKAIAESDLGVSPNNDGTIIRINIPELTEERRKDMMKQCKSIGEEGKVAVRNIRRDGVDLIKKLEKAATIGKDEMQDGLDLMQKMTDKRVKEIDDIVAKKEKELSKV 227
BLAST of NO11G01210 vs. NCBI_GenBank
Match: XP_005716293.1 (Ribosome-recycling factor RRF, Rhodoplastic [Chondrus crispus] >CDF36474.1 Ribosome-recycling factor RRF, Rhodoplastic [Chondrus crispus]) HSP 1 Score: 199.1 bits (505), Expect = 1.500e-47 Identity = 106/213 (49.77%), Postives = 148/213 (69.48%), Query Frame = 0 Query: 19 FAPQAVRLVGAPAASCRSSRRMAVTMEGEVAGVTKDAESKMKKCVDSTDNNLKAIRTGRASVTLLDRVMVDYFGSPTPLNQLAGISISGPQSLVVSPYDKSAFKLIETAILESNLGLNPNNEGSVLRLNIPPLTEDRRKVLSKQAKSVAEEGKVAVRNVRRDAVERVKKFEKDKAIGKDESATGQEALQKLTDKYGKQLDEMLKAKEKEIMTV 232 F+ RL +P+ S SS R +T K+ +M K +DS + +RTGRAS +++DRVMV Y+ TPLNQLA +S+SG +++V PYDKS +E I+ES++G+ PNN+GS +RL++PPLTEDRRK L KQ K +AEEG+VA+RN+RRDAV+ +KK EK K +GKDES T Q +QK+TDK+ K++DE+LK KE +I+ V Sbjct: 38 FSTSTRRLQHSPSQSNPSSVRCELTQN----ETGKETTDRMGKTLDSVQSAFSTVRTGRASTSMVDRVMVSYYDVETPLNQLASVSLSGTSTILVEPYDKSCMGDVERGIMESDVGITPNNDGSCIRLSVPPLTEDRRKELVKQVKGLAEEGRVALRNIRRDAVDSLKKLEKKKELGKDESKTLQSEVQKITDKHVKRIDELLKQKEADILKV 246
BLAST of NO11G01210 vs. NCBI_GenBank
Match: XP_002185186.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC43318.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 199.1 bits (505), Expect = 1.500e-47 Identity = 100/173 (57.80%), Postives = 131/173 (75.72%), Query Frame = 0 Query: 59 MKKCVDSTDNNLKAIRTGRASVTLLDRVMVDYFGSPTPLNQLAGISISGPQSLVVSPYDKSAFKLIETAILESNLGLNPNNEGSVLRLNIPPLTEDRRKVLSKQAKSVAEEGKVAVRNVRRDAVERVKKFEKDKAIGKDESATGQEALQKLTDKYGKQLDEMLKAKEKEIMTV 232 M K VDS NL+++RTGRAS +LDRV VDY+G TPLNQ+A IS+ Q L + PYDK++ IETAI+ES+LGL NN+GS++R+NIP +TEDRRK + K KS+ EEGKVAVRN+RRD ++ +KK EK IG+DE GQ+ +QKLTDK K++DE++ AKEKE+M V Sbjct: 1 MAKSVDSVRLNLQSVRTGRASAQILDRVKVDYYGVETPLNQMATISVPSAQQLSIDPYDKTSLNNIETAIVESDLGLTTNNDGSIIRINIPSMTEDRRKEMLKLCKSIGEEGKVAVRNIRRDGLDTIKKMEKSSDIGEDEMKDGQDTMQKLTDKNVKEIDEVVGAKEKEVMKV 173
BLAST of NO11G01210 vs. NCBI_GenBank
Match: AFG38038.1 (ribosome recycling factor [Spirochaeta africana DSM 8902]) HSP 1 Score: 196.8 bits (499), Expect = 7.300e-47 Identity = 99/180 (55.00%), Postives = 135/180 (75.00%), Query Frame = 0 Query: 52 TKDAESKMKKCVDSTDNNLKAIRTGRASVTLLDRVMVDYFGSPTPLNQLAGISISGPQSLVVSPYDKSAFKLIETAILESNLGLNPNNEGSVLRLNIPPLTEDRRKVLSKQAKSVAEEGKVAVRNVRRDAVERVKKFEKDKAIGKDESATGQEALQKLTDKYGKQLDEMLKAKEKEIMTV 232 TKDAES+MKK + + + AIRTGRAS L D++MV+Y+G+PTPLNQ+A +S + +V+ P+DKSA IE AI +S L LNPNN+G V+R+NIPPLTEDRRK + K AK +AE+ KVA+RN+RRDA +++K+ +KD I +DE Q+ +QKLTD Y KQ+ +ML AKEKEI+ + Sbjct: 3 TKDAESRMKKSIKALEEEFAAIRTGRASTALFDKIMVEYYGTPTPLNQVATVSTPEARLVVIQPWDKSALGDIEKAIQKSELSLNPNNDGKVIRINIPPLTEDRRKEIVKSAKQIAEQAKVAIRNIRRDANDQLKQQQKDGEISEDEEKRLQDDVQKLTDTYTKQISQMLDAKEKEILEI 182
BLAST of NO11G01210 vs. NCBI_GenBank
Match: WP_041397263.1 (ribosome recycling factor [Spirochaeta africana]) HSP 1 Score: 196.8 bits (499), Expect = 7.300e-47 Identity = 99/180 (55.00%), Postives = 135/180 (75.00%), Query Frame = 0 Query: 52 TKDAESKMKKCVDSTDNNLKAIRTGRASVTLLDRVMVDYFGSPTPLNQLAGISISGPQSLVVSPYDKSAFKLIETAILESNLGLNPNNEGSVLRLNIPPLTEDRRKVLSKQAKSVAEEGKVAVRNVRRDAVERVKKFEKDKAIGKDESATGQEALQKLTDKYGKQLDEMLKAKEKEIMTV 232 TKDAES+MKK + + + AIRTGRAS L D++MV+Y+G+PTPLNQ+A +S + +V+ P+DKSA IE AI +S L LNPNN+G V+R+NIPPLTEDRRK + K AK +AE+ KVA+RN+RRDA +++K+ +KD I +DE Q+ +QKLTD Y KQ+ +ML AKEKEI+ + Sbjct: 7 TKDAESRMKKSIKALEEEFAAIRTGRASTALFDKIMVEYYGTPTPLNQVATVSTPEARLVVIQPWDKSALGDIEKAIQKSELSLNPNNDGKVIRINIPPLTEDRRKEIVKSAKQIAEQAKVAIRNIRRDANDQLKQQQKDGEISEDEEKRLQDDVQKLTDTYTKQISQMLDAKEKEILEI 186
BLAST of NO11G01210 vs. NCBI_GenBank
Match: OEU13240.1 (ribosome releasing factor [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 195.7 bits (496), Expect = 1.600e-46 Identity = 97/178 (54.49%), Postives = 134/178 (75.28%), Query Frame = 0 Query: 54 DAESKMKKCVDSTDNNLKAIRTGRASVTLLDRVMVDYFGSPTPLNQLAGISISGPQSLVVSPYDKSAFKLIETAILESNLGLNPNNEGSVLRLNIPPLTEDRRKVLSKQAKSVAEEGKVAVRNVRRDAVERVKKFEKDKAIGKDESATGQEALQKLTDKYGKQLDEMLKAKEKEIMTV 232 DA KMKK +DS N+ ++RTGRAS +LDRV Y+G+ TP++Q+A IS+ Q L+V P+DK+A IE AI+++++GL P N+GSV+RLNIP LTEDRRK + KQ K++ EEGKVA+RN+RR AVE +KK EK IG+DES Q+ +QK+TDK K++D+++ KEKE+MTV Sbjct: 47 DATDKMKKSIDSLYLNMNSVRTGRASPAILDRVRAQYYGTETPISQMATISVPSAQQLMVDPFDKTALGDIERAIVDADIGLTPQNDGSVIRLNIPALTEDRRKEMMKQCKAIGEEGKVAIRNIRRKAVETIKKLEKSSDIGEDESKMAQDKIQKMTDKNVKEVDDIVDRKEKEVMTV 224
BLAST of NO11G01210 vs. NCBI_GenBank
Match: AAP80705.1 (ribosome recycling factor [Griffithsia japonica]) HSP 1 Score: 194.9 bits (494), Expect = 2.800e-46 Identity = 95/177 (53.67%), Postives = 137/177 (77.40%), Query Frame = 0 Query: 55 AESKMKKCVDSTDNNLKAIRTGRASVTLLDRVMVDYFGSPTPLNQLAGISISGPQSLVVSPYDKSAFKLIETAILESNLGLNPNNEGSVLRLNIPPLTEDRRKVLSKQAKSVAEEGKVAVRNVRRDAVERVKKFEKDKAIGKDESATGQEALQKLTDKYGKQLDEMLKAKEKEIMTV 232 +E++M+K +DS + ++RTGRAS +LLDR+ V+Y+G+ TPLN LA +S+SG +LVV PYDKS IE +++ES++GL PN++GS +RL+IP LT++RR L KQ KS+AE+G+VA+RN+RRDAV+ +KK EK +GKDES T Q+ +QKLTDKY K ++ + K KE++IM V Sbjct: 54 SEARMQKTIDSVKSAFNSVRTGRASPSLLDRIQVNYYGADTPLNSLATVSVSGTSTLVVEPYDKSCISDIERSLMESDIGLTPNSDGSTIRLSIPQLTKERRSQLVKQVKSMAEDGRVAIRNIRRDAVDSIKKLEKKSELGKDESKTLQDRVQKLTDKYVKTIESVYKQKEEDIMKV 230 The following BLAST results are available for this feature:
BLAST of NO11G01210 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO11G01210 ID=NO11G01210|Name=NO11G01210|organism=Nannochloropsis oceanica|type=gene|length=1449bpback to top protein sequence of NO11G01210.1 >NO11G01210.1-protein ID=NO11G01210.1-protein|Name=NO11G01210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=232bpback to top Synonyms
Publications
|