NO11G01210.1, NO11G01210.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G01210.1
Unique NameNO11G01210.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1031
Alignment locationchr11:430295..431743 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:430295..431743 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G01210.1 vs.
Match: EWM25103.1 (ribosome recycling factor [Nannochloropsis gaditana])

HSP 1 Score: 338.6 bits (867), Expect = 1.600e-89
Identity = 191/237 (80.59%), Postives = 205/237 (86.50%), Query Frame = 0 
Query:    1 MRAG--IYVLLGLVASTQAFFAPQ-AVRLVGAPAASCRS---SRRMAVTMEGEVAGVTKDAESKMKKCVDSTDNNLKAIRTGRASVTLLDRVMVDYFGSPTPLNQLAGISISGPQSLVVSPYDKSAFKLIETAILESNLGLNPNNEGSVLRLNIPPLTEDRRKVLSKQAKSVAEEGKVAVRNVRRDAVERVKKFEKDKAIGKDESATGQEALQKLTDKYGKQLDEMLKAKEKEIMTV 232
            MRA   + +LL L+ +T AFF  + A  L GAP  S  +   +RRMAVTMEGEVA + K+AE KMKK VDSTDNNLK IRTGRASVTLLDRVMVDYFGSPTPLNQLAG+S+SGPQSLVVSPYDK AFKLIETAILES+LGLNPNNEGSVLRLNIPPLTEDRRK LSK AK +AEEGKVAVRNVRRDAVERVKK EKDK IGKDESA GQEALQKLTDKYGKQLDEMLK+KEKEIMTV
Sbjct:    1 MRASPPLSLLLVLLTATDAFFMGRIASTLHGAPKCSYYTKAIARRMAVTMEGEVADIQKEAEIKMKKSVDSTDNNLKGIRTGRASVTLLDRVMVDYFGSPTPLNQLAGVSVSGPQSLVVSPYDKCAFKLIETAILESSLGLNPNNEGSVLRLNIPPLTEDRRKELSKMAKGLAEEGKVAVRNVRRDAVERVKKLEKDKTIGKDESANGQEALQKLTDKYGKQLDEMLKSKEKEIMTV 237
The following BLAST results are available for this feature:
BLAST of NO11G01210.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25103.11.600e-8980.59ribosome recycling factor [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G01210NO11G01210Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G01210.1NO11G01210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G01210.1.cds1NO11G01210.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01210.1.cds2NO11G01210.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01210.1.cds3NO11G01210.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G01210.1 ID=NO11G01210.1|Name=NO11G01210.1|organism=Nannochloropsis oceanica|type=mRNA|length=1031bp
ACAAAAGCAAGTCAACAATGAGGGCTGGCATCTACGTGTTGCTGGGCCTG
GTGGCCAGCACGCAAGCCTTTTTTGCGCCTCAGGCTGTGCGCCTCGTGGG
TGCACCCGCCGCAAGCTGTCGGTCTAGCAGACGCATGGCAGTGACGATGG
AGGGCGAGGTGGCGGGCGTGACGAAAGACGCTGAGAGTAAGATGAAGAAG
TGCGTGGACTCGACGGACAACAACCTGAAAGCGATTCGTACCGGCCGCGC
CTCCGTCACCCTCCTTGACCGTGTCATGGTCGACTACTTCGGCTCCCCCA
CGCCCTTAAACCAACTCGCCGGCATCTCCATCTCGGGGCCCCAATCCCTC
GTTGTCTCTCCCTATGACAAAAGTGCGTTTAAGCTTATCGAGACGGCCAT
CTTAGAGTCCAATTTAGGCCTTAATCCTAACAATGAAGGGAGTGTGCTCC
GCTTGAACATCCCTCCTCTGACCGAGGACCGGAGGAAGGTCCTCAGCAAG
CAAGCCAAGAGCGTGGCAGAAGAGGGGAAGGTGGCTGTGAGGAATGTGCG
GCGGGATGCGGTGGAGCGAGTGAAGAAGTTTGAGAAGGACAAGGCGATTG
GCAAGGATGAGAGTGCAACGGGCCAGGAGGCGTTGCAGAAACTAACGGAC
AAGTATGGAAAGCAGTTAGATGAGATGCTCAAGGCGAAGGAGAAGGAAAT
CATGACTGTTTAGTGTTCTAAAGGAGGGAAGAAAGGAGGGAGGGAGGGTG
GAAAGGAGAGAGGGAGGGAGGGAAGAGCCAGCTGCTCGCGGGGAAGAAAC
ATGAGTGGGCACGCCTCGAAGGCAACCACTTACACTGCCCATGCGGCTAA
GCCCGCCTACTCCGACGACCACGTGTCGAGGCATCTACGTGATTCATGAC
TGCTCAAATGGCCTCCCCCTTATTGGGTAGATAACTCTCCCTTCTCCCCT
TTACCGCCACCTAGGGACACCTGGGGAAAGAACTGACACACATAAAGAGA
GGATAACAGTTAAAAGGTTGCCAGAAGGAGC
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protein sequence of NO11G01210.1

>NO11G01210.1-protein ID=NO11G01210.1-protein|Name=NO11G01210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=232bp
MRAGIYVLLGLVASTQAFFAPQAVRLVGAPAASCRSSRRMAVTMEGEVAG
VTKDAESKMKKCVDSTDNNLKAIRTGRASVTLLDRVMVDYFGSPTPLNQL
AGISISGPQSLVVSPYDKSAFKLIETAILESNLGLNPNNEGSVLRLNIPP
LTEDRRKVLSKQAKSVAEEGKVAVRNVRRDAVERVKKFEKDKAIGKDESA
TGQEALQKLTDKYGKQLDEMLKAKEKEIMTV*
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mRNA from alignment at chr11:430295..431743+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G01210.1 ID=NO11G01210.1|Name=NO11G01210.1|organism=Nannochloropsis oceanica|type=mRNA|length=1449bp|location=Sequence derived from alignment at chr11:430295..431743+ (Nannochloropsis oceanica)
ACAAAAGCAAGTCAACAATGAGGGCTGGCATCTACGTGTTGCTGGGCCTG
GTGGCCAGCACGCAAGCCTTTTTTGCGCCTCAGGCTGTGCGCCTCGTGGG
TGCACCCGCCGCAAGCTGTCGGTCTAGCAGGTACGTGCGAATTCGGTCAG
GGCAAGTCGTCTTCATCACCACGATAGGCAAGTATCTCCCCCTTACCATT
TCATGCCCATTCACCCCCCCAAAGACGCATGGCAGTGACGATGGAGGGCG
AGGTGGCGGGCGTGACGAAAGACGCTGAGAGTAAGATGAAGAAGTGCGTG
GACTCGACGGACAACAACCTGAAAGCGATTCGTACCGGCCGCGCCTCGTA
AGTGTCGTTGCTACTTTTCTTCTTGCCATATCGCGCCTTCGCTTTGCGTT
CTCTGCTTGATTGAACACTTGTCTGCGCGATACATGTAGAGGACTTAATC
TTCAAGGAGGGACAGAGACTCCGTGACTCAGCTTGCTTGTTGACCACCTC
TATCTTTGGTGTACGTTCGACTCCTTACAATGTTGCGCATAAAACGGATG
GCCCGCTAGAACGACGGACTGCTTAAAACTACTGTCAATTAAGCTCCTCC
TCTACCACTTCATTTCTCTGCCGATTTTAATTTTATTTTCTTATCTTCCT
CCTCCCTGCCCAACTTCCCAGCGTCACCCTCCTTGACCGTGTCATGGTCG
ACTACTTCGGCTCCCCCACGCCCTTAAACCAACTCGCCGGCATCTCCATC
TCGGGGCCCCAATCCCTCGTTGTCTCTCCCTATGACAAAAGTGCGTTTAA
GCTTATCGAGACGGCCATCTTAGAGTCCAATTTAGGCCTTAATCCTAACA
ATGAAGGGAGTGTGCTCCGCTTGAACATCCCTCCTCTGACCGAGGACCGG
AGGAAGGTCCTCAGCAAGCAAGCCAAGAGCGTGGCAGAAGAGGGGAAGGT
GGCTGTGAGGAATGTGCGGCGGGATGCGGTGGAGCGAGTGAAGAAGTTTG
AGAAGGACAAGGCGATTGGCAAGGATGAGAGTGCAACGGGCCAGGAGGCG
TTGCAGAAACTAACGGACAAGTATGGAAAGCAGTTAGATGAGATGCTCAA
GGCGAAGGAGAAGGAAATCATGACTGTTTAGTGTTCTAAAGGAGGGAAGA
AAGGAGGGAGGGAGGGTGGAAAGGAGAGAGGGAGGGAGGGAAGAGCCAGC
TGCTCGCGGGGAAGAAACATGAGTGGGCACGCCTCGAAGGCAACCACTTA
CACTGCCCATGCGGCTAAGCCCGCCTACTCCGACGACCACGTGTCGAGGC
ATCTACGTGATTCATGACTGCTCAAATGGCCTCCCCCTTATTGGGTAGAT
AACTCTCCCTTCTCCCCTTTACCGCCACCTAGGGACACCTGGGGAAAGAA
CTGACACACATAAAGAGAGGATAACAGTTAAAAGGTTGCCAGAAGGAGC
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Coding sequence (CDS) from alignment at chr11:430295..431743+

>NO11G01210.1 ID=NO11G01210.1|Name=NO11G01210.1|organism=Nannochloropsis oceanica|type=CDS|length=696bp|location=Sequence derived from alignment at chr11:430295..431743+ (Nannochloropsis oceanica)
ATGAGGGCTGGCATCTACGTGTTGCTGGGCCTGGTGGCCAGCACGCAAGC
CTTTTTTGCGCCTCAGGCTGTGCGCCTCGTGGGTGCACCCGCCGCAAGCT
GTCGGTCTAGCAGACGCATGGCAGTGACGATGGAGGGCGAGGTGGCGGGC
GTGACGAAAGACGCTGAGAGTAAGATGAAGAAGTGCGTGGACTCGACGGA
CAACAACCTGAAAGCGATTCGTACCGGCCGCGCCTCCGTCACCCTCCTTG
ACCGTGTCATGGTCGACTACTTCGGCTCCCCCACGCCCTTAAACCAACTC
GCCGGCATCTCCATCTCGGGGCCCCAATCCCTCGTTGTCTCTCCCTATGA
CAAAAGTGCGTTTAAGCTTATCGAGACGGCCATCTTAGAGTCCAATTTAG
GCCTTAATCCTAACAATGAAGGGAGTGTGCTCCGCTTGAACATCCCTCCT
CTGACCGAGGACCGGAGGAAGGTCCTCAGCAAGCAAGCCAAGAGCGTGGC
AGAAGAGGGGAAGGTGGCTGTGAGGAATGTGCGGCGGGATGCGGTGGAGC
GAGTGAAGAAGTTTGAGAAGGACAAGGCGATTGGCAAGGATGAGAGTGCA
ACGGGCCAGGAGGCGTTGCAGAAACTAACGGACAAGTATGGAAAGCAGTT
AGATGAGATGCTCAAGGCGAAGGAGAAGGAAATCATGACTGTTTAG
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Synonyms
Publications