NO11G01070, NO11G01070 (gene) Nannochloropsis oceanica

Overview
NameNO11G01070
Unique NameNO11G01070
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length597
Alignment locationchr11:398841..399437 +

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Properties
Property NameValue
DescriptionPheophorbide a oxygenase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:398841..399437 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0010277chlorophyllide a oxygenase [overall] activity
GO:0005488binding
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR013626PaO
Homology
BLAST of NO11G01070 vs. NCBI_GenBank
Match: WP_015201846.1 (pheophorbide a oxygenase [Crinalium epipsammum] >AFZ11724.1 Pheophorbide a oxygenase [Crinalium epipsammum PCC 9333])

HSP 1 Score: 126.7 bits (317), Expect = 8.000e-26
Identity = 75/194 (38.66%), Postives = 99/194 (51.03%), Query Frame = 0
Query:    7 VPLCPPLTEDPDS-VCLDVSRHVPYSYENVKENLLDPSHVPFTHHATIGRRSYAGPMPLKLTSEVSMQGIKGAWEHNIPASPMTKKHLGRVRRETVFNAPSYMHHLISTPELS-TWTVTYATPSRPGKSRILAGIPFKIPEGSNSTDSAPPTKKSSLMSRLRGALFLRIPHWLQHLQQNRVLDDDNIFLAVQER 199
            VP+  P+ E PD  +CL+  R +PY    + EN+LD SHVPFTHH ++G R+ A P+ L++ +    QG KG WE       + K+        T F AP+ M H +++ +   T TV YATP R G+ RI A  PFK                    S+L G      P W  HL QN VL+DD IFL  QER
Sbjct:  153 VPIIEPIEESPDGWICLNTFRDLPYDALTLLENVLDASHVPFTHHRSVGNRTNAAPVELEVVAS-DKQGFKGIWEEGPRKGTLGKQF-------TTFIAPALMWHDLTSKQFGRTLTVVYATPIRKGECRIFARFPFK------------------FSSKLPGLFLKLTPRWYSHLGQNNVLEDDQIFLHYQER 320          
BLAST of NO11G01070 vs. NCBI_GenBank
Match: WP_011244241.1 (MULTISPECIES: cell death suppressor protein Lls1 [Synechococcus] >BAD80121.1 cell death suppressor protein Lls1 homolog [Synechococcus elongatus PCC 6301] >ABB58194.1 cell death suppressor protein Lls1-like [Synechococcus elongatus PCC 7942] >AJD57331.1 cell death suppressor protein Lls1 [Synechococcus sp. UTEX 2973])

HSP 1 Score: 126.3 bits (316), Expect = 1.000e-25
Identity = 83/194 (42.78%), Postives = 99/194 (51.03%), Query Frame = 0
Query:    7 VPLCPPLTEDPDSVCLDVSRHVPYSYENVKENLLDPSHVPFTHHATIGRRSYAGPMPLKLTSEVSMQGIKGAWEHNIPASPMTKKHLGRVRRETVFNAPSYMHHLISTPELS-TWTVTYATPSRPGKSRILAGIPFKIPEGSNSTDSAPPTKKSSLMSRLRGALFLRI-PHWLQHLQQNRVLDDDNIFLAVQER 199
            +PL  P   D D VC+D  R +PY    + EN+LDPSH+PFTHH ++G R+ AGPM      E   QG +G W    P  P   K LG   + T F APS M H +    L    TV YATP R G+ RI A  PF+         SA P              FLRI P W QHL QN VL++D IFL  QER
Sbjct:  151 LPLVEPWGTDADWVCIDTFRDLPYDALTLLENVLDPSHLPFTHHGSVGNRANAGPMTDLKIVESDRQGFQGVW----PEGPRRGK-LG--TQSTTFIAPSLMWHDLEADSLGRAMTVVYATPIRAGECRIFARFPFRF-------KSAIP------------RFFLRIAPTWFQHLGQNTVLEEDQIFLHHQER 318          
BLAST of NO11G01070 vs. NCBI_GenBank
Match: WP_015129619.1 (pheophorbide a oxygenase [Calothrix sp. PCC 7507] >AFY33810.1 Pheophorbide a oxygenase [Calothrix sp. PCC 7507])

HSP 1 Score: 125.6 bits (314), Expect = 1.800e-25
Identity = 77/194 (39.69%), Postives = 104/194 (53.61%), Query Frame = 0
Query:    7 VPLCPPLTEDP-DSVCLDVSRHVPYSYENVKENLLDPSHVPFTHHATIGRRSYAGPMPLKLTSEVSMQGIKGAWEHNIPASPMTKKHLGRVRRETVFNAPSYMHHLISTPELS-TWTVTYATPSRPGKSRILAGIPFKIPEGSNSTDSAPPTKKSSLMSRLRGALFLRIPHWLQHLQQNRVLDDDNIFLAVQER 199
            +P+  PL E P + VCL+  R +PY    + EN+LD SH+PFTHH ++G R+ A P+ L++ S  + QG  G WE      P   K LG  R+ET F AP  M H +++ +   T TV YATP R G+ R+ A  PFK P                  ++L G L    P W  H+ QN +L+DD IFL  QER
Sbjct:  154 IPIVAPLEESPTEWVCLNTFRDLPYDALTLLENVLDSSHLPFTHHRSVGNRANAAPVELEVISS-NKQGFTGIWEE----GPRRGK-LG--RQETKFIAPGLMWHDLTSKQFGRTLTVVYATPIRKGECRLFARFPFKFP------------------NKLPGLLMKLTPRWYNHIGQNGILEDDQIFLHYQER 321          
BLAST of NO11G01070 vs. NCBI_GenBank
Match: WP_035985316.1 (cell death suppressor protein Lls1 [Leptolyngbya sp. KIOST-1])

HSP 1 Score: 125.6 bits (314), Expect = 1.800e-25
Identity = 77/194 (39.69%), Postives = 103/194 (53.09%), Query Frame = 0
Query:    7 VPLCPPLTEDPDS-VCLDVSRHVPYSYENVKENLLDPSHVPFTHHATIGRRSYAGPMPLKLTSEVSMQGIKGAWEHNIPASPMTKKHLGRVRRETVFNAPSYMHHLISTPELS-TWTVTYATPSRPGKSRILAGIPFKIPEGSNSTDSAPPTKKSSLMSRLRGALFLRIPHWLQHLQQNRVLDDDNIFLAVQER 199
            VP+  P+ + PD  V L+  R +PY    + EN+LD SH+P+THH TIG R  A PM +++T E S QG +G W    P  P  K  LG   + T F APS M+H +++ +   T TV YA P R G+ R+ A  PFK                    S+L   +  R P W  H+  NRVL+DD IFL +QER
Sbjct:  157 VPIIGPVADQPDGWVILNTFRDLPYDALTLLENVLDASHIPYTHHKTIGNRDNAAPMEMEVT-ESSKQGFQGLW----PEGP-RKGKLG--TQYTTFVAPSLMYHDLTSKQFGRTMTVVYAVPMRKGECRLFARFPFK------------------FSSKLPSFVIKRTPRWWSHIGNNRVLEDDQIFLHIQER 324          
BLAST of NO11G01070 vs. NCBI_GenBank
Match: WP_017290605.1 (hypothetical protein [Leptolyngbya boryana] >BAS54881.1 Pheophorbide a oxygenase [Leptolyngbya boryana IAM M-101] >BAS61229.1 Pheophorbide a oxygenase [Leptolyngbya boryana dg5] >BAY58981.1 pheophorbide a oxygenase [Leptolyngbya boryana NIES-2135])

HSP 1 Score: 125.2 bits (313), Expect = 2.300e-25
Identity = 78/200 (39.00%), Postives = 106/200 (53.00%), Query Frame = 0
Query:    2 PDTSLVPLCPPLTEDPDS-VCLDVSRHVPYSYENVKENLLDPSHVPFTHHATIGRRSYAGPMPLKLTSEVSMQGIKGAWEHNIPASPMTKKHLGRVRRETVFNAPSYMHHLISTPELS-TWTVTYATPSRPGKSRILAGIPFKIPEGSNSTDSAPPTKKSSLMSRLRGALFLRI-PHWLQHLQQNRVLDDDNIFLAVQER 199
            P+   +P+  P+ E PD  VCL+  R +PY    + EN+LD SH+PFTHH ++G RS A P+ L++  E S QG KG W+         K  LG   ++T F AP+ M H +++ +   T TV YATP+R G+ R+ A  PFK      ST                   F+R+ P W  HL  N VL+DD IFL  QER
Sbjct:  144 PEQVKIPIIEPMEETPDGWVCLNTFRDLPYDALTLLENVLDSSHLPFTHHKSVGNRSNAAPVELEVL-ESSKQGFKGFWQEG-----PRKGTLG--SQQTTFIAPALMWHDLTSKQFGRTLTVVYATPTRKGECRVFARFPFKFASKLPST-------------------FIRLTPRWYSHLGNNTVLEDDQIFLHYQER 316          
BLAST of NO11G01070 vs. NCBI_GenBank
Match: WP_070392436.1 (cell death suppressor protein Lls1 [Moorea producens] >AOW99962.1 cell death suppressor protein Lls1 [Moorea producens PAL-8-15-08-1])

HSP 1 Score: 125.2 bits (313), Expect = 2.300e-25
Identity = 79/195 (40.51%), Postives = 105/195 (53.85%), Query Frame = 0
Query:    7 VPLCPPLTEDPDS-VCLDVSRHVPYSYENVKENLLDPSHVPFTHHATIGRRSYAGPMPLKLTSEVSMQGIKGAWEHNIPASPMTKKHLGRVRRETVFNAPSYMHHLISTPELS-TWTVTYATPSRPGKSRILAGIPFKIPEGSNSTDSAPPTKKSSLMSRLRGALFLRI-PHWLQHLQQNRVLDDDNIFLAVQER 199
            VP+   L EDPD  VCL+  R +PY    + EN+LDPSH+P+THH ++G R+   P+ L++  E    G KG W     A    K  LG  R++T F AP  M H +++ +   T TV YATP R G+ R+ A  PFK                SS + R    LFL++ P W  H+ QN VL+DD IFL  QER
Sbjct:  157 VPIVDALEEDPDGWVCLNTFRDLPYDALTLMENVLDPSHIPYTHHRSVGNRANVSPVELEVV-ESGKWGFKGVW-----AEGPRKGTLG--RQDTTFIAPGLMWHDLTSKQFGRTLTVVYATPIRKGECRLFARFPFKF---------------SSKLPR----LFLKLTPRWYSHIGQNNVLEDDQIFLHYQER 324          
BLAST of NO11G01070 vs. NCBI_GenBank
Match: WP_008184847.1 (cell death suppressor protein Lls1 [Moorea producens] >EGJ32427.1 phenylpropionate dioxygenase family ring-hydroxylating dioxygenase, large terminal subunit [Moorea producens 3L] >OLT65319.1 cell death suppressor protein Lls1 [Moorea producens PAL])

HSP 1 Score: 124.8 bits (312), Expect = 3.000e-25
Identity = 79/195 (40.51%), Postives = 105/195 (53.85%), Query Frame = 0
Query:    7 VPLCPPLTEDPDS-VCLDVSRHVPYSYENVKENLLDPSHVPFTHHATIGRRSYAGPMPLKLTSEVSMQGIKGAWEHNIPASPMTKKHLGRVRRETVFNAPSYMHHLISTPELS-TWTVTYATPSRPGKSRILAGIPFKIPEGSNSTDSAPPTKKSSLMSRLRGALFLRI-PHWLQHLQQNRVLDDDNIFLAVQER 199
            VP+   L EDPD  VCL+  R +PY    + EN+LDPSH+P+THH ++G R+   P+ L++  E    G KG W     A    K  LG  R++T F AP  M H +++ +   T TV YATP R G+ R+ A  PFK                SS + R    LFL++ P W  H+ QN VL+DD IFL  QER
Sbjct:  157 VPIVDALEEDPDGWVCLNTFRDLPYDALTLMENVLDPSHIPYTHHRSVGNRANVSPVELEVV-ESGKCGFKGVW-----AEGPRKGTLG--RQDTTFIAPGLMWHDLTSKQFGRTLTVVYATPIRKGECRLFARFPFKF---------------SSKLPR----LFLKLTPRWYSHIGQNNVLEDDQIFLHYQER 324          
BLAST of NO11G01070 vs. NCBI_GenBank
Match: WP_016874431.1 (cell death suppressor protein Lls1 [Chlorogloeopsis fritschii])

HSP 1 Score: 124.4 bits (311), Expect = 3.900e-25
Identity = 75/194 (38.66%), Postives = 100/194 (51.55%), Query Frame = 0
Query:    7 VPLCPPLTEDPDS-VCLDVSRHVPYSYENVKENLLDPSHVPFTHHATIGRRSYAGPMPLKLTSEVSMQGIKGAWEHNIPASPMTKKHLGRVRRETVFNAPSYMHHLISTPELS-TWTVTYATPSRPGKSRILAGIPFKIPEGSNSTDSAPPTKKSSLMSRLRGALFLRIPHWLQHLQQNRVLDDDNIFLAVQER 199
            VP+  PL EDP+  +CL+  R +PY    + EN+LDPSHVP+THH T+G R+    + L++  E    G KG W     A    K  LG  R++T F AP  M H +++ +   T TV YATP R G+ R+ A  PFK                    S+L G      P W  H+ QN VL+DD IFL  Q+R
Sbjct:  163 VPIVEPLEEDPEGWICLNTFRDLPYDALTLMENVLDPSHVPYTHHRTVGNRANVSAVELEVV-ESGKWGFKGTW-----AEGPRKGTLG--RQDTTFIAPGLMWHDLTSKQFGRTLTVVYATPIRKGECRLFARFPFK------------------FSSKLPGLFLKLTPRWYSHIGQNNVLEDDQIFLHYQQR 330          
BLAST of NO11G01070 vs. NCBI_GenBank
Match: WP_011317409.1 (cell death suppressor protein Lls1 [Trichormus variabilis] >ABA20159.1 Rieske (2Fe-2S) region [Trichormus variabilis ATCC 29413])

HSP 1 Score: 124.4 bits (311), Expect = 3.900e-25
Identity = 74/193 (38.34%), Postives = 95/193 (49.22%), Query Frame = 0
Query:    7 VPLCPPLTEDPDS-VCLDVSRHVPYSYENVKENLLDPSHVPFTHHATIGRRSYAGPMPLKLTSEVSMQGIKGAWEHNIPASPMTKKHLGRVRRETVFNAPSYMHHLISTPELSTWTVTYATPSRPGKSRILAGIPFKIPEGSNSTDSAPPTKKSSLMSRLRGALFLRIPHWLQHLQQNRVLDDDNIFLAVQER 199
            +P+  PL E PD  V ++  R VPY    + EN+LDPSH+ +THH T+G R  A P+ L++       G KG W  +I A        G+    T F AP+ M H I++      TV YATP R G+ R+ A  PFK P                  S+L G      P W  HL QN VL+DD IFL  QER
Sbjct:  149 IPVVEPLEESPDGWVIINTFRDVPYDALTLLENILDPSHLAYTHHKTVGNRKNAAPLELEVVVS-GKHGFKGVWHQSIKA--------GQSELSTTFVAPALMWHDINSERGRILTVVYATPIRKGECRLFARFPFKFP------------------SKLPGIFIKLRPRWYYHLGQNGVLEDDQIFLHYQER 314          
BLAST of NO11G01070 vs. NCBI_GenBank
Match: WP_106232702.1 (cell death suppressor protein Lls1 [Pleurocapsa sp. CCALA 161] >PSB12656.1 cell death suppressor protein Lls1 [Pleurocapsa sp. CCALA 161])

HSP 1 Score: 124.4 bits (311), Expect = 3.900e-25
Identity = 79/197 (40.10%), Postives = 103/197 (52.28%), Query Frame = 0
Query:    4 TSLVPLCPPLTEDPDS-VCLDVSRHVPYSYENVKENLLDPSHVPFTHHATIGRRSYAGPMPLKLTSEVSMQGIKGAWEHNIPASPMTKKHLGRVRRETVFNAPSYMHHLISTPELS-TWTVTYATPSRPGKSRILAGIPFKIPEGSNSTDSAPPTKKSSLMSRLRGALFLRIPHWLQHLQQNRVLDDDNIFLAVQER 199
            T+ VP+  P+ EDPD+ VCL++ R +PY    + EN++D SH+P+THH T+G RS   P+ L++T E   QG KG W          K  LG   + T F AP  + H +++ +   T TV YATP   GK R+ A  PFK         SAP          L   L    P W  HL QN VL+DD IFL  QER
Sbjct:  147 TTPVPIIKPMAEDPDAWVCLNIFRDLPYDALTLLENVIDASHIPYTHHKTVGNRSNVAPVELEIT-ESGKQGFKGIW-----IEGPRKGKLG--TQYTTFTAPCLIWHDLTSQQFGRTLTVVYATPISKGKCRLFARFPFKF--------SAP----------LPRFLIKLTPTWYSHLNQNSVLEDDQIFLHHQER 317          
The following BLAST results are available for this feature:
BLAST of NO11G01070 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
WP_015201846.18.000e-2638.66pheophorbide a oxygenase [Crinalium epipsammum] >A... [more]
WP_011244241.11.000e-2542.78MULTISPECIES: cell death suppressor protein Lls1 [... [more]
WP_015129619.11.800e-2539.69pheophorbide a oxygenase [Calothrix sp. PCC 7507] ... [more]
WP_035985316.11.800e-2539.69cell death suppressor protein Lls1 [Leptolyngbya s... [more]
WP_017290605.12.300e-2539.00hypothetical protein [Leptolyngbya boryana] >BAS54... [more]
WP_070392436.12.300e-2540.51cell death suppressor protein Lls1 [Moorea produce... [more]
WP_008184847.13.000e-2540.51cell death suppressor protein Lls1 [Moorea produce... [more]
WP_016874431.13.900e-2538.66cell death suppressor protein Lls1 [Chlorogloeopsi... [more]
WP_011317409.13.900e-2538.34cell death suppressor protein Lls1 [Trichormus var... [more]
WP_106232702.13.900e-2540.10cell death suppressor protein Lls1 [Pleurocapsa sp... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL116nonsL116Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR019ngnoR019Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002164NSK002164Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G01070.1NO11G01070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591017gene_4985Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100016g32gene5388Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G01070.1NO11G01070.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G01070 ID=NO11G01070|Name=NO11G01070|organism=Nannochloropsis oceanica|type=gene|length=597bp
ATGCCCGACACAAGCTTGGTTCCCCTTTGTCCGCCCCTGACCGAAGATCC
TGATTCAGTATGTCTTGATGTGAGCCGCCACGTACCCTACTCGTACGAGA
ACGTGAAGGAGAACTTGCTGGATCCGAGCCATGTCCCTTTTACTCACCAC
GCCACAATTGGAAGGCGGTCCTACGCGGGTCCTATGCCTTTGAAACTGAC
AAGTGAGGTGTCTATGCAAGGCATTAAGGGCGCATGGGAACACAATATTC
CAGCCTCGCCCATGACGAAAAAACACCTGGGGCGTGTCAGGCGCGAAACG
GTATTCAATGCCCCATCCTATATGCACCACCTCATTTCCACGCCCGAGCT
GTCGACCTGGACGGTAACGTACGCCACTCCCTCGCGTCCAGGCAAGAGTC
GCATTTTGGCCGGAATCCCATTCAAAATTCCTGAGGGCTCAAACAGCACA
GACTCCGCGCCTCCTACAAAGAAGTCCTCCCTTATGTCCCGTCTAAGGGG
TGCCCTGTTCTTGCGGATCCCGCACTGGCTGCAGCATTTGCAACAGAATC
GCGTACTCGATGACGACAACATTTTCTTGGCCGTGCAAGAACGGTGA
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protein sequence of NO11G01070.1

>NO11G01070.1-protein ID=NO11G01070.1-protein|Name=NO11G01070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=199bp
MPDTSLVPLCPPLTEDPDSVCLDVSRHVPYSYENVKENLLDPSHVPFTHH
ATIGRRSYAGPMPLKLTSEVSMQGIKGAWEHNIPASPMTKKHLGRVRRET
VFNAPSYMHHLISTPELSTWTVTYATPSRPGKSRILAGIPFKIPEGSNST
DSAPPTKKSSLMSRLRGALFLRIPHWLQHLQQNRVLDDDNIFLAVQER*
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Synonyms
Publications