NO11G01070.1, NO11G01070.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G01070.1
Unique NameNO11G01070.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length597
Alignment locationchr11:398841..399437 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:398841..399437 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO11G01070.1 vs.
Match: EWM25140.1 (pheophorbide a oxygenase [Nannochloropsis gaditana])

HSP 1 Score: 309.7 bits (792), Expect = 6.600e-81
Identity = 151/206 (73.30%), Postives = 165/206 (80.10%), Query Frame = 0
Query:    2 PDTSLVPLCPPLTEDPDSVCLDVSRHVPYSYENVKENLLDPSHVPFTHHATIGRRSYAGPMPLKLTSEVSMQGIKGAWEHNIPASPMTKKHLGRVRRETVFNAPSYMHHLISTPELSTWTVTYATPSRPGKSRILAGIPFKIPE---------GSNSTDSAPPTKKSSLMSRLRGALFLRIPHWLQHLQQNRVLDDDNIFLAVQER 199
            P   L+PLCPPL  D D +CLDVSR VPYSYE  KENLLDPSHVPFTHHATIGRRSYA P+PLKLTSEV++ G +G WE NIPASPMTKKHLGRV RET+FNAPSYMHHLISTPE+STWTVTYATPSRPG+ RILA  PFK P+         G N+T  A P +  S  SRLR A+FL IP W+QHLQQNRVLDDDNIFLAVQER
Sbjct:  197 PSVDLIPLCPPLV-DEDLICLDVSRDVPYSYEQAKENLLDPSHVPFTHHATIGRRSYASPVPLKLTSEVTLAGFRGTWERNIPASPMTKKHLGRVERETLFNAPSYMHHLISTPEVSTWTVTYATPSRPGQCRILARFPFKFPDPVTDTGSLGGFNTTPPASPLRGRSWASRLRRAIFLSIPDWMQHLQQNRVLDDDNIFLAVQER 401          
The following BLAST results are available for this feature:
BLAST of NO11G01070.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25140.16.600e-8173.30pheophorbide a oxygenase [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G01070NO11G01070Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G01070.1NO11G01070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G01070.1.cds1NO11G01070.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G01070.1 ID=NO11G01070.1|Name=NO11G01070.1|organism=Nannochloropsis oceanica|type=mRNA|length=597bp
ATGCCCGACACAAGCTTGGTTCCCCTTTGTCCGCCCCTGACCGAAGATCC
TGATTCAGTATGTCTTGATGTGAGCCGCCACGTACCCTACTCGTACGAGA
ACGTGAAGGAGAACTTGCTGGATCCGAGCCATGTCCCTTTTACTCACCAC
GCCACAATTGGAAGGCGGTCCTACGCGGGTCCTATGCCTTTGAAACTGAC
AAGTGAGGTGTCTATGCAAGGCATTAAGGGCGCATGGGAACACAATATTC
CAGCCTCGCCCATGACGAAAAAACACCTGGGGCGTGTCAGGCGCGAAACG
GTATTCAATGCCCCATCCTATATGCACCACCTCATTTCCACGCCCGAGCT
GTCGACCTGGACGGTAACGTACGCCACTCCCTCGCGTCCAGGCAAGAGTC
GCATTTTGGCCGGAATCCCATTCAAAATTCCTGAGGGCTCAAACAGCACA
GACTCCGCGCCTCCTACAAAGAAGTCCTCCCTTATGTCCCGTCTAAGGGG
TGCCCTGTTCTTGCGGATCCCGCACTGGCTGCAGCATTTGCAACAGAATC
GCGTACTCGATGACGACAACATTTTCTTGGCCGTGCAAGAACGGTGA
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protein sequence of NO11G01070.1

>NO11G01070.1-protein ID=NO11G01070.1-protein|Name=NO11G01070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=199bp
MPDTSLVPLCPPLTEDPDSVCLDVSRHVPYSYENVKENLLDPSHVPFTHH
ATIGRRSYAGPMPLKLTSEVSMQGIKGAWEHNIPASPMTKKHLGRVRRET
VFNAPSYMHHLISTPELSTWTVTYATPSRPGKSRILAGIPFKIPEGSNST
DSAPPTKKSSLMSRLRGALFLRIPHWLQHLQQNRVLDDDNIFLAVQER*
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mRNA from alignment at chr11:398841..399437+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G01070.1 ID=NO11G01070.1|Name=NO11G01070.1|organism=Nannochloropsis oceanica|type=mRNA|length=597bp|location=Sequence derived from alignment at chr11:398841..399437+ (Nannochloropsis oceanica)
ATGCCCGACACAAGCTTGGTTCCCCTTTGTCCGCCCCTGACCGAAGATCC TGATTCAGTATGTCTTGATGTGAGCCGCCACGTACCCTACTCGTACGAGA ACGTGAAGGAGAACTTGCTGGATCCGAGCCATGTCCCTTTTACTCACCAC GCCACAATTGGAAGGCGGTCCTACGCGGGTCCTATGCCTTTGAAACTGAC AAGTGAGGTGTCTATGCAAGGCATTAAGGGCGCATGGGAACACAATATTC CAGCCTCGCCCATGACGAAAAAACACCTGGGGCGTGTCAGGCGCGAAACG GTATTCAATGCCCCATCCTATATGCACCACCTCATTTCCACGCCCGAGCT GTCGACCTGGACGGTAACGTACGCCACTCCCTCGCGTCCAGGCAAGAGTC GCATTTTGGCCGGAATCCCATTCAAAATTCCTGAGGGCTCAAACAGCACA GACTCCGCGCCTCCTACAAAGAAGTCCTCCCTTATGTCCCGTCTAAGGGG TGCCCTGTTCTTGCGGATCCCGCACTGGCTGCAGCATTTGCAACAGAATC GCGTACTCGATGACGACAACATTTTCTTGGCCGTGCAAGAACGGTGA
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Coding sequence (CDS) from alignment at chr11:398841..399437+

>NO11G01070.1 ID=NO11G01070.1|Name=NO11G01070.1|organism=Nannochloropsis oceanica|type=CDS|length=597bp|location=Sequence derived from alignment at chr11:398841..399437+ (Nannochloropsis oceanica)
ATGCCCGACACAAGCTTGGTTCCCCTTTGTCCGCCCCTGACCGAAGATCC
TGATTCAGTATGTCTTGATGTGAGCCGCCACGTACCCTACTCGTACGAGA
ACGTGAAGGAGAACTTGCTGGATCCGAGCCATGTCCCTTTTACTCACCAC
GCCACAATTGGAAGGCGGTCCTACGCGGGTCCTATGCCTTTGAAACTGAC
AAGTGAGGTGTCTATGCAAGGCATTAAGGGCGCATGGGAACACAATATTC
CAGCCTCGCCCATGACGAAAAAACACCTGGGGCGTGTCAGGCGCGAAACG
GTATTCAATGCCCCATCCTATATGCACCACCTCATTTCCACGCCCGAGCT
GTCGACCTGGACGGTAACGTACGCCACTCCCTCGCGTCCAGGCAAGAGTC
GCATTTTGGCCGGAATCCCATTCAAAATTCCTGAGGGCTCAAACAGCACA
GACTCCGCGCCTCCTACAAAGAAGTCCTCCCTTATGTCCCGTCTAAGGGG
TGCCCTGTTCTTGCGGATCCCGCACTGGCTGCAGCATTTGCAACAGAATC
GCGTACTCGATGACGACAACATTTTCTTGGCCGTGCAAGAACGGTGA
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Synonyms
Publications