NO11G01070, NO11G01070 (gene) Nannochloropsis oceanica

Overview
NameNO11G01070
Unique NameNO11G01070
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length597
Alignment locationchr11:398841..399437 +

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Properties
Property NameValue
DescriptionPheophorbide a oxygenase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:398841..399437 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0010277chlorophyllide a oxygenase [overall] activity
GO:0005488binding
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR013626PaO
Homology
BLAST of NO11G01070 vs. NCBI_GenBank
Match: EWM25140.1 (pheophorbide a oxygenase [Nannochloropsis gaditana])

HSP 1 Score: 309.7 bits (792), Expect = 6.600e-81
Identity = 151/206 (73.30%), Postives = 165/206 (80.10%), Query Frame = 0
Query:    2 PDTSLVPLCPPLTEDPDSVCLDVSRHVPYSYENVKENLLDPSHVPFTHHATIGRRSYAGPMPLKLTSEVSMQGIKGAWEHNIPASPMTKKHLGRVRRETVFNAPSYMHHLISTPELSTWTVTYATPSRPGKSRILAGIPFKIPE---------GSNSTDSAPPTKKSSLMSRLRGALFLRIPHWLQHLQQNRVLDDDNIFLAVQER 199
            P   L+PLCPPL  D D +CLDVSR VPYSYE  KENLLDPSHVPFTHHATIGRRSYA P+PLKLTSEV++ G +G WE NIPASPMTKKHLGRV RET+FNAPSYMHHLISTPE+STWTVTYATPSRPG+ RILA  PFK P+         G N+T  A P +  S  SRLR A+FL IP W+QHLQQNRVLDDDNIFLAVQER
Sbjct:  197 PSVDLIPLCPPLV-DEDLICLDVSRDVPYSYEQAKENLLDPSHVPFTHHATIGRRSYASPVPLKLTSEVTLAGFRGTWERNIPASPMTKKHLGRVERETLFNAPSYMHHLISTPEVSTWTVTYATPSRPGQCRILARFPFKFPDPVTDTGSLGGFNTTPPASPLRGRSWASRLRRAIFLSIPDWMQHLQQNRVLDDDNIFLAVQER 401          
BLAST of NO11G01070 vs. NCBI_GenBank
Match: OLP90130.1 (Zeaxanthin epoxidase, chloroplastic [Symbiodinium microadriaticum])

HSP 1 Score: 164.5 bits (415), Expect = 3.400e-37
Identity = 93/207 (44.93%), Postives = 121/207 (58.45%), Query Frame = 0
Query:    3 DTSLVPLCPPLTEDPDSVCLDVSRHVPYSYENVKENLLDPSHVPFTHHATIGRRSYAGPMPLKLTSEVSMQGIKGAWEHNIPASPM---TKKHLGRVRRETVFNAPSYMHHLISTPE--------LSTWTVTYATPSRPGKSRILAGIPFKIPEGSNSTDSAPPTKKSSLMSRLRGALFLRIPHWLQHLQQNRVLDDDNIFLAVQER 199
            D SL+P+C  + E  +   +DVSR +PYS + + ENLLD SHVPFTHH T+ +R  A P+PL++T  +S  G +GA++ + P         K+  R  R T+F AP+YMHH I T +          TWTV YATPS PG+SR+ A  PF+ P        AP  K    + RL   L   +P WL HL Q RVLDDDNIFL +QER
Sbjct:  422 DESLIPICDAM-ESSEFEWIDVSRDMPYSADILLENLLDSSHVPFTHHKTVSKRENAQPLPLQITERISASGFRGAFKTDTPVGKQGTDAIKNGRRTARSTMFKAPTYMHHRIRTSDSQGNLDNGFETWTVAYATPSGPGRSRLFARFPFRFP--------AP--KFGPNLPRL---LVRHLPDWLNHLGQLRVLDDDNIFLPIQER 614          
BLAST of NO11G01070 vs. NCBI_GenBank
Match: KOO22708.1 (pheophorbide a oxygenase [Chrysochromulina sp. CCMP291])

HSP 1 Score: 160.2 bits (404), Expect = 6.500e-36
Identity = 93/222 (41.89%), Postives = 123/222 (55.41%), Query Frame = 0
Query:    1 MPDTSLVPLCPPLTEDPDSVCLDVSRHVPYSYENVKENLLDPSHVPFTHHATIGRRSYAGPMPLKLTSEVSMQGIKGAWEHNIPASPMTKKHLG------RVRRETVFNAPSYMHHLISTPELS-------------TWTVTYATPSRPGKSRILAGIPFKIPEGSNSTDSAPPTKKSSLMSR-----LRGALFLRIPHWLQHLQQNRVLDDDNIFLAVQER 199
            +PD + +P+C  L ED   V +DVSR +PYS + + EN+LD SHVPFTHH TI +R  A P+PL LT  +S  G  G  E+ +       K  G      R  R TVF AP+YMHH I +  L+             TWTV YATP+ PG+ R+ A  PF+ P         PP  ++ L+ +     L   +F R+P W QH+ Q +VLDDDNIFL +QER
Sbjct:  152 LPDEAQIPICEAL-EDDRFVWIDVSRDMPYSADMLLENVLDSSHVPFTHHQTISKRENAKPLPLVLTETLSADGFSG--ENRVDGDAGVLKVQGSAPPTRRTERTTVFRAPTYMHHKIRSGGLAGTDAENDFDAGFETWTVAYATPTGPGRCRLFARFPFRFP---------PPKPRTGLLGKLPSINLPAEVFRRVPTWAQHMGQLKVLDDDNIFLPLQER 361          
BLAST of NO11G01070 vs. NCBI_GenBank
Match: CEM01847.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 150.6 bits (379), Expect = 5.100e-33
Identity = 89/202 (44.06%), Postives = 114/202 (56.44%), Query Frame = 0
Query:    2 PDTSLVPLCPPLTEDPDSVCLDVSRHVPYSYENVKENLLDPSHVPFTHHATIGRRSYAGPMPLKLTSEVS-MQGIKGAWEHNIPASPMT---KKHLGRVRRETVFNAPSYMHHLI--STPELSTWTVTYATPSRPGKSRILAGIPFKIPEGSNSTDSAPPTKKSSLMSRLRGALFLRIPHWLQHLQQNRVLDDDNIFLAVQE 198
            P  SL+P    + EDPD V LD+SR +PY Y  + EN+LD +H+PFTHH TIG+R  A P+PLKL   +  + G  G+W    P   MT   K   G  RR T F  P  M+H +  S    + WTV YA P+ PG+SRI+A  PF+  EGS      P  K  + M R        +P WLQH+ QN V+DDD IFL +QE
Sbjct:  217 PAESLIPTL-KIYEDPDVVSLDMSRDLPYDYSTLLENVLDSAHIPFTHHKTIGKRERAVPIPLKLDGHLDPVHGFSGSWTSAPPL--MTGGGKTKEGVYRRSTRFVPPVLMYHRLEDSAENATMWTVVYAVPTSPGRSRIIARFPFRFGEGSK-----PMAKFVTFMLRF-------VPDWLQHINQNLVMDDDAIFLYLQE 403          
BLAST of NO11G01070 vs. NCBI_GenBank
Match: WP_103137183.1 (cell death suppressor protein Lls1 [Nostoc sp. CENA543] >AUT00791.1 cell death suppressor protein Lls1 [Nostoc sp. CENA543])

HSP 1 Score: 129.4 bits (324), Expect = 1.200e-26
Identity = 79/198 (39.90%), Postives = 104/198 (52.53%), Query Frame = 0
Query:    3 DTSLVPLCPPLTEDPDS-VCLDVSRHVPYSYENVKENLLDPSHVPFTHHATIGRRSYAGPMPLKLTSEVSMQGIKGAWEHNIPASPMTKKHLGRVRRETVFNAPSYMHHLISTPELS-TWTVTYATPSRPGKSRILAGIPFKIPEGSNSTDSAPPTKKSSLMSRLRGALFLRIPHWLQHLQQNRVLDDDNIFLAVQER 199
            D +LVP+   L ++PD  VCL+  R +PY    + EN+LD SH+P+THH T+G R+   P+ L++T E    G KG W     A    K  LG  R++T F AP  M H +++ +   T TV YATP R G+ R+ A  PFK                    S+L G      P W  HL QNRVL+DD IFL  QER
Sbjct:  159 DKTLVPIVEALEDEPDGWVCLNTFRDLPYDALTLMENVLDTSHIPYTHHRTVGNRANVSPVNLEIT-ESGKWGFKGTW-----AEGPRKGTLG--RQDTTFIAPGLMWHDLTSKQYGRTLTVVYATPIRKGECRLFARFPFK------------------FSSKLPGIFLKLTPRWYSHLGQNRVLEDDQIFLHYQER 330          
BLAST of NO11G01070 vs. NCBI_GenBank
Match: WP_096687651.1 (MULTISPECIES: cell death suppressor protein Lls1 [Calothrix] >BAZ11302.1 pheophorbide a oxygenase [Calothrix sp. NIES-4071] >BAZ57448.1 pheophorbide a oxygenase [Calothrix sp. NIES-4105])

HSP 1 Score: 128.6 bits (322), Expect = 2.100e-26
Identity = 80/194 (41.24%), Postives = 104/194 (53.61%), Query Frame = 0
Query:    7 VPLCPPLTEDPDS-VCLDVSRHVPYSYENVKENLLDPSHVPFTHHATIGRRSYAGPMPLKLTSEVSMQGIKGAWEHNIPASPMTKKHLGRVRRETVFNAPSYMHHLISTPELS-TWTVTYATPSRPGKSRILAGIPFKIPEGSNSTDSAPPTKKSSLMSRLRGALFLRIPHWLQHLQQNRVLDDDNIFLAVQER 199
            VP+  PL E  D  VC+D  R +PY    + EN+LD SHVP+THH ++G R+ AGP+ L++  E   QG KG WE         +  LG  R++T F AP  M H I++ +   T TV YATP R G+ R+ A  PFK                SS + RL   +F   P W  H+ QN VL+DD IFL  QER
Sbjct:  167 VPIVEPLDETVDDWVCIDTFRDLPYDALTLMENVLDASHVPYTHHRSVGNRTNAGPVELEVV-EAGKQGFKGKWEEG-----PRRGTLG--RQDTTFVAPGLMWHDITSKQFGRTMTVVYATPIRKGECRLFARFPFKF---------------SSPIPRL---IFKLTPRWYSHIGQNNVLEDDQIFLHFQER 334          
BLAST of NO11G01070 vs. NCBI_GenBank
Match: XP_003058352.1 (chloroplast envelope protein translocase family [Micromonas pusilla CCMP1545] >EEH56807.1 chloroplast envelope protein translocase family [Micromonas pusilla CCMP1545])

HSP 1 Score: 127.9 bits (320), Expect = 3.600e-26
Identity = 72/194 (37.11%), Postives = 104/194 (53.61%), Query Frame = 0
Query:    7 VPLCPPLTEDPDSVCL--DVSRHVPYSYENVKENLLDPSHVPFTHHATIGRRSYAGPMPLKLTSEVSMQGIKGAWEHNIPASPMTKKHLGRVRRETVFNAPSYMHHLISTPELSTWTVTYATPSRPGKSRILAGIPFKIPEGSNSTDSAPPTKKSSLMSRLRGALFLRIPHWLQHLQQNRVLDDDNIFLAVQER 199
            VP+ P + +   S C+  D+SR +P  Y  + EN++D SHVPFTHH ++GRR  A P+  +LT+E++  G +G W+      P   K+  +    T F AP+ M H + T + +T TV YA P+ PG+ R++A  PF          +APP              F  +P W  HL QN +L+DD IFL  QER
Sbjct:  240 VPVIPEIDDPGASHCVVQDISRDLPMDYATLLENVMDISHVPFTHHGSVGRRENATPVVAELTTELADGGFEGIWKE----GPRNGKYGSQY---THFQAPALMRHTLRTDQFTTLTVVYAVPTTPGRCRLMARFPFIF-------KAAPPR-----------FFFKLVPRWWSHLNQNSILEDDQIFLHKQER 408          
BLAST of NO11G01070 vs. NCBI_GenBank
Match: WP_006098410.1 (cell death suppressor protein Lls1 [Coleofasciculus chthonoplastes] >EDX77974.1 Pheophorbide a oxygenase family [Coleofasciculus chthonoplastes PCC 7420])

HSP 1 Score: 127.9 bits (320), Expect = 3.600e-26
Identity = 77/193 (39.90%), Postives = 102/193 (52.85%), Query Frame = 0
Query:    7 VPLCPPLTEDPDS-VCLDVSRHVPYSYENVKENLLDPSHVPFTHHATIGRRSYAGPMPLKLTSEVSMQGIKGAWEHNIPASPMTKKHLGRVRRETVFNAPSYMHHLISTPELS-TWTVTYATPSRPGKSRILAGIPFKIPEGSNSTDSAPPTKKSSLMSRLRGALFLRIPHWLQHLQQNRVLDDDNIFLAVQE 198
            VP+  PL + P+  VC+D  R +PY    + EN+LD SHVPFTHH ++  R+YA P+ L++T E   QG KG WE         K  LG  R++T F AP+ M H +++ +   T TV YATP R G+ R+ A  PFK                    S+L G      P W  H+ QN VL+DD IFL  QE
Sbjct:  133 VPIVEPLDDSPEGWVCIDTFRDLPYDALTLLENVLDVSHVPFTHHRSVSDRAYASPVELEVT-ESGKQGFKGVWEQG-----PRKGTLG--RQDTTFLAPTLMWHDLTSKQFGRTMTVVYATPIRKGECRLFARFPFK------------------FASKLPGFFIKLTPRWYSHIGQNGVLEDDQIFLHYQE 299          
BLAST of NO11G01070 vs. NCBI_GenBank
Match: WP_073594643.1 (cell death suppressor protein Lls1 [Phormidium ambiguum] >OKH36678.1 cell death suppressor protein Lls1 [Phormidium ambiguum IAM M-71])

HSP 1 Score: 127.9 bits (320), Expect = 3.600e-26
Identity = 78/194 (40.21%), Postives = 104/194 (53.61%), Query Frame = 0
Query:    7 VPLCPPLTEDPDS-VCLDVSRHVPYSYENVKENLLDPSHVPFTHHATIGRRSYAGPMPLKLTSEVSMQGIKGAWEHNIPASPMTKKHLGRVRRETVFNAPSYMHHLISTPELS-TWTVTYATPSRPGKSRILAGIPFKIPEGSNSTDSAPPTKKSSLMSRLRGALFLRIPHWLQHLQQNRVLDDDNIFLAVQER 199
            VP+   + E+ D  +C++  R +PY    + EN+LD SHVP+THH T+G RS AGP+ L++T E S  G KG W+         K  LG  R++T F AP+ M H +++ +   T TV YATP R G+ R+ A  PFK                    S+L G      P W  HL QNRVL+DD IFL  QER
Sbjct:  156 VPIVEAIEENSDEWICINTFRDLPYDALTLLENVLDASHVPYTHHRTVGNRSNAGPVELEVT-ESSKHGFKGVWQEG-----PRKGTLG--RQDTTFIAPNLMWHDLTSKQFGRTLTVVYATPIRKGECRLFAIFPFK------------------FSSKLPGLFIKLTPRWYSHLGQNRVLEDDQIFLHHQER 323          
BLAST of NO11G01070 vs. NCBI_GenBank
Match: WP_012412708.1 (cell death suppressor protein Lls1 [Nostoc punctiforme] >ACC84772.1 Pheophorbide a oxygenase [Nostoc punctiforme PCC 73102])

HSP 1 Score: 127.5 bits (319), Expect = 4.700e-26
Identity = 77/194 (39.69%), Postives = 100/194 (51.55%), Query Frame = 0
Query:    7 VPLCPPLTEDPDS-VCLDVSRHVPYSYENVKENLLDPSHVPFTHHATIGRRSYAGPMPLKLTSEVSMQGIKGAWEHNIPASPMTKKHLGRVRRETVFNAPSYMHHLISTPELS-TWTVTYATPSRPGKSRILAGIPFKIPEGSNSTDSAPPTKKSSLMSRLRGALFLRIPHWLQHLQQNRVLDDDNIFLAVQER 199
            VP+  PL +DPD  +CL+  R VPY    + EN+LD SH+P+THH T+G R+   P+ L++  E    G KG W     A    K  LG  R++T F AP  M H +++ +   T TV YATP R G+ R+ A  PFK                    S L G      P W  H+ QNRVL+DD IFL  QER
Sbjct:  163 VPIVEPLEQDPDGWICLNTFRDVPYDALTLMENVLDTSHIPYTHHRTVGNRANVSPIDLEII-ESGKWGFKGTW-----AEGPRKGTLG--RQDTTFIAPGLMWHDLTSKQYGRTLTVVYATPIRKGECRLFARFPFK------------------FSSNLPGLFLKLTPRWYSHIGQNRVLEDDQIFLHYQER 330          
The following BLAST results are available for this feature:
BLAST of NO11G01070 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25140.16.600e-8173.30pheophorbide a oxygenase [Nannochloropsis gaditana... [more]
OLP90130.13.400e-3744.93Zeaxanthin epoxidase, chloroplastic [Symbiodinium ... [more]
KOO22708.16.500e-3641.89pheophorbide a oxygenase [Chrysochromulina sp. CCM... [more]
CEM01847.15.100e-3344.06unnamed protein product [Vitrella brassicaformis C... [more]
WP_103137183.11.200e-2639.90cell death suppressor protein Lls1 [Nostoc sp. CEN... [more]
WP_096687651.12.100e-2641.24MULTISPECIES: cell death suppressor protein Lls1 [... [more]
XP_003058352.13.600e-2637.11chloroplast envelope protein translocase family [M... [more]
WP_006098410.13.600e-2639.90cell death suppressor protein Lls1 [Coleofasciculu... [more]
WP_073594643.13.600e-2640.21cell death suppressor protein Lls1 [Phormidium amb... [more]
WP_012412708.14.700e-2639.69cell death suppressor protein Lls1 [Nostoc punctif... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL116nonsL116Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR019ngnoR019Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002164NSK002164Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G01070.1NO11G01070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591017gene_4985Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100016g32gene5388Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G01070.1NO11G01070.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G01070 ID=NO11G01070|Name=NO11G01070|organism=Nannochloropsis oceanica|type=gene|length=597bp
ATGCCCGACACAAGCTTGGTTCCCCTTTGTCCGCCCCTGACCGAAGATCC
TGATTCAGTATGTCTTGATGTGAGCCGCCACGTACCCTACTCGTACGAGA
ACGTGAAGGAGAACTTGCTGGATCCGAGCCATGTCCCTTTTACTCACCAC
GCCACAATTGGAAGGCGGTCCTACGCGGGTCCTATGCCTTTGAAACTGAC
AAGTGAGGTGTCTATGCAAGGCATTAAGGGCGCATGGGAACACAATATTC
CAGCCTCGCCCATGACGAAAAAACACCTGGGGCGTGTCAGGCGCGAAACG
GTATTCAATGCCCCATCCTATATGCACCACCTCATTTCCACGCCCGAGCT
GTCGACCTGGACGGTAACGTACGCCACTCCCTCGCGTCCAGGCAAGAGTC
GCATTTTGGCCGGAATCCCATTCAAAATTCCTGAGGGCTCAAACAGCACA
GACTCCGCGCCTCCTACAAAGAAGTCCTCCCTTATGTCCCGTCTAAGGGG
TGCCCTGTTCTTGCGGATCCCGCACTGGCTGCAGCATTTGCAACAGAATC
GCGTACTCGATGACGACAACATTTTCTTGGCCGTGCAAGAACGGTGA
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protein sequence of NO11G01070.1

>NO11G01070.1-protein ID=NO11G01070.1-protein|Name=NO11G01070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=199bp
MPDTSLVPLCPPLTEDPDSVCLDVSRHVPYSYENVKENLLDPSHVPFTHH
ATIGRRSYAGPMPLKLTSEVSMQGIKGAWEHNIPASPMTKKHLGRVRRET
VFNAPSYMHHLISTPELSTWTVTYATPSRPGKSRILAGIPFKIPEGSNST
DSAPPTKKSSLMSRLRGALFLRIPHWLQHLQQNRVLDDDNIFLAVQER*
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Synonyms
Publications