NO11G01030, NO11G01030 (gene) Nannochloropsis oceanica

Overview
NameNO11G01030
Unique NameNO11G01030
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length837
Alignment locationchr11:383685..384521 +

Link to JBrowse

Properties
Property NameValue
DescriptionBeclin 1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:383685..384521 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006914autophagy
GO:0006914autophagy
Vocabulary: INTERPRO
TermDefinition
IPR007243Atg6/Beclin
Homology
BLAST of NO11G01030 vs. NCBI_GenBank
Match: XP_005856298.1 (beclin 1, partial [Nannochloropsis gaditana CCMP526] >EKU20078.1 beclin 1, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 173.3 bits (438), Expect = 1.000e-39
Identity = 87/160 (54.37%), Postives = 113/160 (70.62%), Query Frame = 0
Query:    5 DNAEQQVQRLRKELEAVDLERALVRRRRAQVEGRRRRLQRLQSRWWVSNNAAERMVIHLVGNQNATLQDVARAKARLKVLAQLNAANDCFYIWHAGPFATINGCRLGRLPSFMTVEWVDINAGLGQSMLLLDTLVRRAGFRFRDHQLMPLGSFSKIIKLP 165
            D  E  +  LR++L+AV+  R  + RRRA VE +RRRLQ L   W   NN+A   ++ L  +  AT      A ARL+ L QLN ANDCF++WH+GPFAT+NGC +GRLP+F  VEW DINAGLGQ++LLLDTLV++ GFRFR  +L+P GSFSKI++ P
Sbjct:    6 DGPEAHILHLREKLKAVEARRITLHRRRALVEKKRRRLQGLLDLWQSLNNSAAEALLDLSESHQATHGSELSAGARLEALTQLNVANDCFHVWHSGPFATMNGCSIGRLPAFAAVEWTDINAGLGQAILLLDTLVKQTGFRFRRLELVPFGSFSKILRSP 165          
BLAST of NO11G01030 vs. NCBI_GenBank
Match: CBJ29009.1 (Beclin [Ectocarpus siliculosus])

HSP 1 Score: 172.9 bits (437), Expect = 1.400e-39
Identity = 86/190 (45.26%), Postives = 120/190 (63.16%), Query Frame = 0
Query:   86 QLNAANDCFYIWHAGPFATINGCRLGRLPSFMTVEWVDINAGLGQSMLLLDTLVRRAGFRFRDHQLMPLGSFSKIIKLPRGREEAGLVPSSPRASGGNALNLYYDEANLVFFPRRNLNAALVAFLRCVEEFGTYVEQQDPTLRLPHRIQD-GGKVGGLSISLIQGEEETWTRALKYLLTDLKWLLAWSAK 275
            ++ A NDCF+IWH GPF TING R+GRL + + V+W ++NAG+GQ+ ++L T+    G  F  + + P GSF+KI                 R+  G  L   + + +   FPRRN N AL AFL C+ E G +V++ DPTLRLP+ I++  G VGGL ++L    E+ WTRALKY+LTDLKW+ AW+AK
Sbjct:  240 RMGALNDCFHIWHQGPFGTINGFRVGRLNTHV-VDWQEVNAGVGQAAIVLVTVAMAMGVEFTKYLIAPCGSFTKI----------------ARSEDGRVLYSLHTDESFSLFPRRNFNFALKAFLHCLGEVGDHVQEHDPTLRLPYHIKEKEGTVGGLPVALGSSYED-WTRALKYMLTDLKWIAAWAAK 411          
BLAST of NO11G01030 vs. NCBI_GenBank
Match: GAY00470.1 (beclin-1-like protein [Pythium insidiosum])

HSP 1 Score: 172.9 bits (437), Expect = 1.400e-39
Identity = 94/199 (47.24%), Postives = 122/199 (61.31%), Query Frame = 0
Query:   77 AKARLKVLAQLNAANDCFYIWHAGPFATINGCRLGRLPSFMTVEWVDINAGLGQSMLLLDTLVRRAGFRFRDHQLMPLGSFSKIIKLPRGREEAGLVPSSPRASGGNALNLYYDEANLVFFPRRNLNAALVAFLRCVEEFGTYVEQQDPTLRLPHRIQDGGKVGGLSISLIQGEEETWTRALKYLLTDLKWLLAWSAKR 276
            A   L+ L + N  ND F+IWH G F TING RLGRLP+   VEWV+INA LGQ++LLL T+  RA F F  ++L+P GSFS++  +                  G   +LY D      F RR  N ALV FL CV++ G    +++P+L+ P++IQ  GK+G L ISL  G +E WT+ALKY+LT LKWLLAW AKR
Sbjct:  364 ASDMLRRLQRYNVCNDVFHIWHDGHFGTINGLRLGRLPT-RPVEWVEINAALGQAVLLLATIAERANFDFTRNKLVPRGSFSRVANM-----------------YGKEYSLYSDGG---MFRRRGFNQALVLFLECVDDAGKQAMKEEPSLKFPYKIQ-RGKIGDLPISL--GNDEQWTKALKYMLTHLKWLLAWVAKR 538          
BLAST of NO11G01030 vs. NCBI_GenBank
Match: XP_024583962.1 (beclin-1-like protein [Plasmopara halstedii] >CEG47593.1 beclin-1-like protein [Plasmopara halstedii])

HSP 1 Score: 171.4 bits (433), Expect = 3.900e-39
Identity = 107/273 (39.19%), Postives = 154/273 (56.41%), Query Frame = 0
Query:    8 EQQVQRLRKELEAVDLERALVRRRRAQVEGRRRRLQRLQSRWWVSNNAAERMVI-HLVGNQNATLQDVA----RAKARLKVLAQLNAANDCFYIWHAGPFATINGCRLGRLPSFMTVEWVDINAGLGQSMLLLDTLVRRAGFRFRDHQLMPLGSFSKIIKLPRGREEAGLVPSSPRASGGNALNLYYDEANLVFFPRRNLNAALVAFLRCVEEFGTYVEQQDPTLRLPHRIQDGGKVGGLSISLIQGEEETWTRALKYLLTDLKWLLAWSAKR 276
            +++ + L  +L A++ E   V  +R ++      L++L     +    AE   + HL+G      Q V+     A   L+ L + N  ND F+IWH G F TING RLGRLP    VEWV+INA LGQ++LLL T+  RA F F  ++L+P GSFS+++ +                  G   +LY D      F RR  N A++ FL CVE+ G    +++P+L+ P+++ + GK+GGL ISL  G +E WTRALKY+LT LKWLLAW +KR
Sbjct:  374 QEEERVLNAQLRAIEDETLQVTAKRRELWSTGMDLEQL-----IHGTFAEGAFLQHLLGLSRDERQSVSVFAVHASDMLRRLQRYNVCNDVFHIWHDGLFGTINGLRLGRLP-LKPVEWVEINAALGQAVLLLATIADRANFEFSRNRLVPRGSFSRVVNM-----------------YGKEYSLYSDGG---MFRRRGFNQAMILFLECVEDAGRRAMKEEPSLKFPYKV-ERGKIGGLPISL--GNDEQWTRALKYMLTHLKWLLAWISKR 617          
BLAST of NO11G01030 vs. NCBI_GenBank
Match: XP_012210536.1 (hypothetical protein SPRG_21648 [Saprolegnia parasitica CBS 223.65] >KDO18758.1 hypothetical protein SPRG_21648 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 170.6 bits (431), Expect = 6.700e-39
Identity = 95/218 (43.58%), Postives = 126/218 (57.80%), Query Frame = 0
Query:   59 MVIHLVGNQNATLQDVARAKARLKVLAQLNAANDCFYIWHAGPFATINGCRLGRLPSFMTVEWVDINAGLGQSMLLLDTLVRRAGFRFRDHQLMPLGSFSKIIKLPRGREEAGLVPSSPRASGGNALNLYYDEANLVFFPRRNLNAALVAFLRCVEEFGTYVEQQDPTLRLPHRIQDGGKVGGLSISLIQGEEETWTRALKYLLTDLKWLLAWSAKRV 277
            ++ H    +++       A   L+ L + N  ND F+IWH G F TING RLGRLPS   VEW +INA LGQ+ LLL T+  RA   F  H  +  GS+SK++             ++P         LY D +   FF R+  N ALV FL CV+E G    +++P+LR P++I   GK+G L+IS + G +E WTRALKYLLT LKWLLAW AKR+
Sbjct:   65 LMTHTKEERSSVSTFAVHASDVLRCLQRYNVFNDTFHIWHEGSFGTINGLRLGRLPS-KPVEWAEINAALGQATLLLATVASRANLNFARHTPVARGSYSKML-------------TAPSKDKRKEYPLYSDGS---FFQRQKFNQALVFFLECVDEAGVRAMREEPSLRFPYKIYK-GKIGELAIS-VGGNDEQWTRALKYLLTHLKWLLAWIAKRI 263          
BLAST of NO11G01030 vs. NCBI_GenBank
Match: XP_016608509.1 (hypothetical protein SPPG_04786 [Spizellomyces punctatus DAOM BR117] >KND00470.1 hypothetical protein SPPG_04786 [Spizellomyces punctatus DAOM BR117])

HSP 1 Score: 169.1 bits (427), Expect = 2.000e-38
Identity = 86/201 (42.79%), Postives = 123/201 (61.19%), Query Frame = 0
Query:   80 RLKVLAQLNAANDCFYIWHAGPFATINGCRLGRLPSFMTVEWVDINAGLGQSMLLLDTLVRRAGFRFRDHQLMPLGSFSKIIKLPRGREEAGLVPSSPRASGGNALNLYYDEANL--VFFPRRNLNAALVAFLRCVEEFGTYVEQQDPTLRLPHRIQDGGKVGGLSISLIQGEEETWTRALKYLLTDLKWLLAWSAKRVAT 279
            +L+ L + N  ND F IWH GPF TING R+GRLP+   V+W +INA +GQ++LLLDT+  +  F F+ ++L+P+GSFS+I K                  G   ++  Y   +L  + F  R  + ALV+FL C+++ G Y EQ+DP  RLP+RI    K+G  SI L   ++E WT+ALKY+L DLKW+LA+   R+ T
Sbjct:  287 QLEKLKKTNVYNDTFRIWHDGPFGTINGFRMGRLPN-QPVDWSEINAAMGQALLLLDTMASKLNFTFKGYRLVPMGSFSRIEK----------------TDGDKGVHELYGSGDLKGMLFWNRRFDNALVSFLNCLQQIGDYAEQRDPKFRLPYRISK-DKIGDTSIRLQFNQDEAWTKALKYMLIDLKWILAFCCTRMNT 469          
BLAST of NO11G01030 vs. NCBI_GenBank
Match: XP_008616421.1 (hypothetical protein SDRG_12139 [Saprolegnia diclina VS20] >EQC30078.1 hypothetical protein SDRG_12139 [Saprolegnia diclina VS20])

HSP 1 Score: 163.7 bits (413), Expect = 8.200e-37
Identity = 107/271 (39.48%), Postives = 145/271 (53.51%), Query Frame = 0
Query:    5 DNAEQQVQRLRKELEAVDLERALVRRRRAQVEGRRRRLQRLQSRWWVSNNAAERMVIHLVGNQNATLQDVARAKARLKVLAQLNAANDCFYIWHAGPFATINGCRLGRLPSFMTVEWVDINAGLGQSMLLLDTLVRRAGFRFRDHQLMPLGSFSKIIKLPRGREEAGLVPSSPRASGGNALNLYYDEANLVFFPRRNLNAALVAFLRCVEEFGTYVEQQDPTLRLPHRIQDGGKVGGLSISLIQGEEETWTRALKYLLTDLKWLLAWSAKR 276
            D  E + + L   L  +D E A+V R R  +      L  LQ   +      + +       +++       A   L+ L + N  ND F+IWH G F TING RLGRLPS   VEW +INA LGQ+ LLL T+  RA   F  H  +  GS+SK++   + +++    P            LY D +   FF R+  N ALV FL CV+E G    +++P+LR P++I   GK+G L+IS + G +E WTRALKYLLT LKWLLAW AKR
Sbjct:  408 DELELKARALDDMLRYMDEESAMVLRNRELIWSCATELATLQRDSFDHGAVVQLLHASTKEERSSVSTFAVHASDVLRCLQRYNVFNDTFHIWHEGSFGTINGLRLGRLPS-KPVEWAEINAALGQATLLLATVAGRANLTFARHTPVARGSYSKML-TAQSKDKRKEYP------------LYSDGS---FFQRQKFNQALVFFLECVDEAGVRAMREEPSLRFPYKIYK-GKIGELAIS-VGGNDEQWTRALKYLLTHLKWLLAWIAKR 659          
BLAST of NO11G01030 vs. NCBI_GenBank
Match: OQR95573.1 (beclin-1 [Thraustotheca clavata])

HSP 1 Score: 163.7 bits (413), Expect = 8.200e-37
Identity = 106/271 (39.11%), Postives = 143/271 (52.77%), Query Frame = 0
Query:    5 DNAEQQVQRLRKELEAVDLERALVRRRRAQVEGRRRRLQRLQSRWWVSNNAAERMVIHLVGNQNATLQDVARAKARLKVLAQLNAANDCFYIWHAGPFATINGCRLGRLPSFMTVEWVDINAGLGQSMLLLDTLVRRAGFRFRDHQLMPLGSFSKIIKLPRGREEAGLVPSSPRASGGNALNLYYDEANLVFFPRRNLNAALVAFLRCVEEFGTYVEQQDPTLRLPHRIQDGGKVGGLSISLIQGEEETWTRALKYLLTDLKWLLAWSAKR 276
            +  E +   L + L  ++ E  ++ R R  +      L  LQ + +      +         + +       A   L+ L + N  ND F+IWH G F TING RLGRLPS   VEW +INA LGQ+ LLL T+  RA  +F  H  +  GS+SK++    G+E     P            LY D +   FF R+  N ALV FL CV+E G    +++PTLR P++I   GK+G L+IS + G +E WTRALKYLLT LKWLLAW AKR
Sbjct:  360 EELESKSAALSEILRLINEESQVILRNRELIWSCATELASLQHQTFDEGAIVQLASTFTKEERTSVGTFAVHASDMLRCLQRYNVMNDTFHIWHEGSFGTINGLRLGRLPS-KPVEWTEINAALGQATLLLATVASRANLQFARHTPVARGSYSKML-TSHGKERRREYP------------LYSDGS---FFQRQKFNQALVFFLECVDEAGQRAMREEPTLRFPYKIFK-GKIGELAIS-VGGNDEQWTRALKYLLTHLKWLLAWVAKR 611          
BLAST of NO11G01030 vs. NCBI_GenBank
Match: XP_008871386.1 (hypothetical protein H310_07420 [Aphanomyces invadans] >ETV99968.1 hypothetical protein H310_07420 [Aphanomyces invadans])

HSP 1 Score: 163.3 bits (412), Expect = 1.100e-36
Identity = 93/195 (47.69%), Postives = 116/195 (59.49%), Query Frame = 0
Query:   81 LKVLAQLNAANDCFYIWHAGPFATINGCRLGRLPSFMTVEWVDINAGLGQSMLLLDTLVRRAGFRFRDHQLMPLGSFSKIIKLPRGREEAGLVPSSPRASGGNALNLYYDEANLVFFPRRNLNAALVAFLRCVEEFGTYVEQQDPTLRLPHRIQDGGKVGGLSISLIQGEEETWTRALKYLLTDLKWLLAWSAKR 276
            L+ L + N  ND F+IWH G F TING RLGRLPS   VEW +INA LGQ+ LLL T+ +RAG  F     +  GS+SKI+ +  G+++    P            LY D     F  R+  N AL   L CVEE G     ++P+LR P++I   GK+G LSI  + G +E WTRALKYLLT LKWLLAW AKR
Sbjct: 1155 LRCLQRYNVFNDAFHIWHDGSFGTINGLRLGRLPS-RPVEWTEINAALGQTTLLLTTVAQRAGMEFSKIVPIARGSYSKIV-VVLGKDKKKEYP------------LYSDGG---FLQRQKFNTALKCLLECVEEAGGQAAAEEPSLRFPYKI-TRGKIGDLSIE-VGGNDEQWTRALKYLLTHLKWLLAWVAKR 1330          
BLAST of NO11G01030 vs. NCBI_GenBank
Match: OQR99709.1 (beclin-1-like protein [Achlya hypogyna])

HSP 1 Score: 162.9 bits (411), Expect = 1.400e-36
Identity = 111/272 (40.81%), Postives = 147/272 (54.04%), Query Frame = 0
Query:    5 DNAEQQVQRLRKELEAVDLERALVRRRRAQVEGRRRRLQRLQSRWWVSNNAAERMVIHLVGNQNATLQDVA-RAKARLKVLAQLNAANDCFYIWHAGPFATINGCRLGRLPSFMTVEWVDINAGLGQSMLLLDTLVRRAGFRFRDHQLMPLGSFSKIIKLPRGREEAGLVPSSPRASGGNALNLYYDEANLVFFPRRNLNAALVAFLRCVEEFGTYVEQQDPTLRLPHRIQDGGKVGGLSISLIQGEEETWTRALKYLLTDLKWLLAWSAKR 276
            +  E + + L   L  VD E AL+ R R  +      L  LQ R      A  ++       + A++   A  A   L+ L + N  ND F+IWH G F TING RLGRLPS   VEW +INA LGQ+ LL+ T+  RA   F  H  +  GS+SK++    G+E     P            L+ D +   FF R+  N ALV FL C+EE G    +++P+LR P++I   GK+G L+IS + G +E WTRALKYLLT LKWLLAW AKR
Sbjct:  397 EELEAKARALEDLLRLVDDESALLLRNRELIWSCATELAGLQ-REAFEEGAIVQLGHTTTKEERASVATFAVHASDVLRCLQRYNVFNDAFHIWHDGSFGTINGLRLGRLPS-KPVEWTEINAALGQATLLVATVASRANLTFSRHTPVARGSYSKML-TAHGKERKKEYP------------LFSDGS---FFQRQKFNQALVFFLECIEEAGNRAMREEPSLRFPYKIFK-GKIGELAIS-VGGNDEQWTRALKYLLTHLKWLLAWIAKR 648          
The following BLAST results are available for this feature:
BLAST of NO11G01030 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005856298.11.000e-3954.38beclin 1, partial [Nannochloropsis gaditana CCMP52... [more]
CBJ29009.11.400e-3945.26Beclin [Ectocarpus siliculosus][more]
GAY00470.11.400e-3947.24beclin-1-like protein [Pythium insidiosum][more]
XP_024583962.13.900e-3939.19beclin-1-like protein [Plasmopara halstedii] >CEG4... [more]
XP_012210536.16.700e-3943.58hypothetical protein SPRG_21648 [Saprolegnia paras... [more]
XP_016608509.12.000e-3842.79hypothetical protein SPPG_04786 [Spizellomyces pun... [more]
XP_008616421.18.200e-3739.48hypothetical protein SDRG_12139 [Saprolegnia dicli... [more]
OQR95573.18.200e-3739.11beclin-1 [Thraustotheca clavata][more]
XP_008871386.11.100e-3647.69hypothetical protein H310_07420 [Aphanomyces invad... [more]
OQR99709.11.400e-3640.81beclin-1-like protein [Achlya hypogyna][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL116nonsL116Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR019ngnoR019Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002169NSK002169Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G01030.1NO11G01030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Atg6gene5383Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G01030.1NO11G01030.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G01030 ID=NO11G01030|Name=NO11G01030|organism=Nannochloropsis oceanica|type=gene|length=837bp
ATGAAGGTTTACGACAATGCTGAACAACAGGTGCAGCGTCTGCGGAAGGA
GCTCGAGGCTGTGGACTTAGAGCGGGCTCTGGTGCGTCGGCGGCGAGCTC
AAGTTGAAGGGAGACGGCGCCGGCTCCAGCGGCTGCAATCGCGATGGTGG
GTCAGCAACAACGCCGCGGAGCGAATGGTGATTCACTTGGTGGGAAACCA
GAACGCTACACTGCAAGATGTGGCGCGTGCCAAGGCCCGGCTGAAGGTAC
TGGCGCAGTTGAATGCAGCAAATGATTGTTTCTATATTTGGCATGCGGGG
CCCTTTGCAACCATTAATGGATGCCGCCTGGGCCGCCTACCTTCCTTCAT
GACGGTCGAGTGGGTAGATATCAATGCAGGCCTGGGCCAATCAATGCTTC
TGCTTGACACATTGGTGCGACGAGCGGGCTTTAGATTCCGGGACCACCAG
CTGATGCCCTTGGGTTCATTCTCCAAAATTATTAAACTGCCCAGGGGACG
AGAGGAGGCGGGTTTGGTACCCAGCAGTCCCCGCGCCAGCGGCGGTAACG
CGTTGAATCTGTACTATGACGAGGCCAATCTGGTTTTCTTCCCCCGCCGA
AATCTGAACGCGGCACTGGTCGCGTTTCTGCGGTGCGTAGAGGAGTTTGG
GACATATGTCGAGCAGCAGGACCCGACTCTTCGCCTGCCACATCGCATCC
AAGACGGCGGGAAAGTGGGCGGGCTGTCCATAAGTCTTATTCAGGGGGAA
GAAGAAACGTGGACGCGAGCGCTAAAATATCTGCTGACGGATCTCAAGTG
GCTGTTGGCCTGGAGTGCAAAACGCGTGGCGACTTGA
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protein sequence of NO11G01030.1

>NO11G01030.1-protein ID=NO11G01030.1-protein|Name=NO11G01030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=279bp
MKVYDNAEQQVQRLRKELEAVDLERALVRRRRAQVEGRRRRLQRLQSRWW
VSNNAAERMVIHLVGNQNATLQDVARAKARLKVLAQLNAANDCFYIWHAG
PFATINGCRLGRLPSFMTVEWVDINAGLGQSMLLLDTLVRRAGFRFRDHQ
LMPLGSFSKIIKLPRGREEAGLVPSSPRASGGNALNLYYDEANLVFFPRR
NLNAALVAFLRCVEEFGTYVEQQDPTLRLPHRIQDGGKVGGLSISLIQGE
EETWTRALKYLLTDLKWLLAWSAKRVAT*
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Synonyms
Publications