NO11G01030.1, NO11G01030.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G01030.1
Unique NameNO11G01030.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length837
Alignment locationchr11:383685..384521 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:383685..384521 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO11G01030.1 vs.
Match: EWM25124.1 (beclin 1 [Nannochloropsis gaditana])

HSP 1 Score: 326.6 bits (836), Expect = 7.300e-86
Identity = 163/274 (59.49%), Postives = 203/274 (74.09%), Query Frame = 0
Query:    5 DNAEQQVQRLRKELEAVDLERALVRRRRAQVEGRRRRLQRLQSRWWVSNNAAERMVIHLVGNQNATLQDVARAKARLKVLAQLNAANDCFYIWHAGPFATINGCRLGRLPSFMTVEWVDINAGLGQSMLLLDTLVRRAGFRFRDHQLMPLGSFSKIIKLP--RGREEAGLVPSSPRASGGNALNLYYDEANLVFFPRRNLNAALVAFLRCVEEFGTYVEQQDPTLRLPHRIQDGGKVGGLSISLIQGEEETWTRALKYLLTDLKWLLAWSAKRV 277
            D  E  +  LR++L+AV+  R  + RRRA VE +RRRLQ L   W   NN+A   ++ L  +  AT      A ARL+ L QLN ANDCF++WH+GPFAT+NGC +GRLP+F  VEW DINAGLGQ++LLLDTLV++ GFRFR  +L+P GSFSKI++ P      E  L+P+SPR +  NA++ YYDEANL FFPRRN+NAALVAFL+CVEEFG++VE  DPT+RLPHR+Q G K+GGL I L  GEE+TW RALKYLLTDLKWL AWSA+ V
Sbjct:    6 DGPEAHILHLREKLKAVEARRITLHRRRALVEKKRRRLQGLLDLWQSLNNSAAEALLDLSESHQATHGSELSAGARLEALTQLNVANDCFHVWHSGPFATMNGCSIGRLPAFAAVEWTDINAGLGQAILLLDTLVKQTGFRFRRLELVPFGSFSKILRSPCDLSDVETKLMPNSPRITASNAMSFYYDEANLAFFPRRNMNAALVAFLQCVEEFGSHVEGLDPTIRLPHRVQ-GNKIGGLPIVLTPGEEDTWNRALKYLLTDLKWLSAWSARHV 278          
The following BLAST results are available for this feature:
BLAST of NO11G01030.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25124.17.300e-8659.49beclin 1 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G01030NO11G01030Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G01030.1NO11G01030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G01030.1.cds1NO11G01030.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G01030.1 ID=NO11G01030.1|Name=NO11G01030.1|organism=Nannochloropsis oceanica|type=mRNA|length=837bp
ATGAAGGTTTACGACAATGCTGAACAACAGGTGCAGCGTCTGCGGAAGGA
GCTCGAGGCTGTGGACTTAGAGCGGGCTCTGGTGCGTCGGCGGCGAGCTC
AAGTTGAAGGGAGACGGCGCCGGCTCCAGCGGCTGCAATCGCGATGGTGG
GTCAGCAACAACGCCGCGGAGCGAATGGTGATTCACTTGGTGGGAAACCA
GAACGCTACACTGCAAGATGTGGCGCGTGCCAAGGCCCGGCTGAAGGTAC
TGGCGCAGTTGAATGCAGCAAATGATTGTTTCTATATTTGGCATGCGGGG
CCCTTTGCAACCATTAATGGATGCCGCCTGGGCCGCCTACCTTCCTTCAT
GACGGTCGAGTGGGTAGATATCAATGCAGGCCTGGGCCAATCAATGCTTC
TGCTTGACACATTGGTGCGACGAGCGGGCTTTAGATTCCGGGACCACCAG
CTGATGCCCTTGGGTTCATTCTCCAAAATTATTAAACTGCCCAGGGGACG
AGAGGAGGCGGGTTTGGTACCCAGCAGTCCCCGCGCCAGCGGCGGTAACG
CGTTGAATCTGTACTATGACGAGGCCAATCTGGTTTTCTTCCCCCGCCGA
AATCTGAACGCGGCACTGGTCGCGTTTCTGCGGTGCGTAGAGGAGTTTGG
GACATATGTCGAGCAGCAGGACCCGACTCTTCGCCTGCCACATCGCATCC
AAGACGGCGGGAAAGTGGGCGGGCTGTCCATAAGTCTTATTCAGGGGGAA
GAAGAAACGTGGACGCGAGCGCTAAAATATCTGCTGACGGATCTCAAGTG
GCTGTTGGCCTGGAGTGCAAAACGCGTGGCGACTTGA
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protein sequence of NO11G01030.1

>NO11G01030.1-protein ID=NO11G01030.1-protein|Name=NO11G01030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=279bp
MKVYDNAEQQVQRLRKELEAVDLERALVRRRRAQVEGRRRRLQRLQSRWW
VSNNAAERMVIHLVGNQNATLQDVARAKARLKVLAQLNAANDCFYIWHAG
PFATINGCRLGRLPSFMTVEWVDINAGLGQSMLLLDTLVRRAGFRFRDHQ
LMPLGSFSKIIKLPRGREEAGLVPSSPRASGGNALNLYYDEANLVFFPRR
NLNAALVAFLRCVEEFGTYVEQQDPTLRLPHRIQDGGKVGGLSISLIQGE
EETWTRALKYLLTDLKWLLAWSAKRVAT*
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mRNA from alignment at chr11:383685..384521+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G01030.1 ID=NO11G01030.1|Name=NO11G01030.1|organism=Nannochloropsis oceanica|type=mRNA|length=837bp|location=Sequence derived from alignment at chr11:383685..384521+ (Nannochloropsis oceanica)
ATGAAGGTTTACGACAATGCTGAACAACAGGTGCAGCGTCTGCGGAAGGA GCTCGAGGCTGTGGACTTAGAGCGGGCTCTGGTGCGTCGGCGGCGAGCTC AAGTTGAAGGGAGACGGCGCCGGCTCCAGCGGCTGCAATCGCGATGGTGG GTCAGCAACAACGCCGCGGAGCGAATGGTGATTCACTTGGTGGGAAACCA GAACGCTACACTGCAAGATGTGGCGCGTGCCAAGGCCCGGCTGAAGGTAC TGGCGCAGTTGAATGCAGCAAATGATTGTTTCTATATTTGGCATGCGGGG CCCTTTGCAACCATTAATGGATGCCGCCTGGGCCGCCTACCTTCCTTCAT GACGGTCGAGTGGGTAGATATCAATGCAGGCCTGGGCCAATCAATGCTTC TGCTTGACACATTGGTGCGACGAGCGGGCTTTAGATTCCGGGACCACCAG CTGATGCCCTTGGGTTCATTCTCCAAAATTATTAAACTGCCCAGGGGACG AGAGGAGGCGGGTTTGGTACCCAGCAGTCCCCGCGCCAGCGGCGGTAACG CGTTGAATCTGTACTATGACGAGGCCAATCTGGTTTTCTTCCCCCGCCGA AATCTGAACGCGGCACTGGTCGCGTTTCTGCGGTGCGTAGAGGAGTTTGG GACATATGTCGAGCAGCAGGACCCGACTCTTCGCCTGCCACATCGCATCC AAGACGGCGGGAAAGTGGGCGGGCTGTCCATAAGTCTTATTCAGGGGGAA GAAGAAACGTGGACGCGAGCGCTAAAATATCTGCTGACGGATCTCAAGTG GCTGTTGGCCTGGAGTGCAAAACGCGTGGCGACTTGA
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Coding sequence (CDS) from alignment at chr11:383685..384521+

>NO11G01030.1 ID=NO11G01030.1|Name=NO11G01030.1|organism=Nannochloropsis oceanica|type=CDS|length=837bp|location=Sequence derived from alignment at chr11:383685..384521+ (Nannochloropsis oceanica)
ATGAAGGTTTACGACAATGCTGAACAACAGGTGCAGCGTCTGCGGAAGGA
GCTCGAGGCTGTGGACTTAGAGCGGGCTCTGGTGCGTCGGCGGCGAGCTC
AAGTTGAAGGGAGACGGCGCCGGCTCCAGCGGCTGCAATCGCGATGGTGG
GTCAGCAACAACGCCGCGGAGCGAATGGTGATTCACTTGGTGGGAAACCA
GAACGCTACACTGCAAGATGTGGCGCGTGCCAAGGCCCGGCTGAAGGTAC
TGGCGCAGTTGAATGCAGCAAATGATTGTTTCTATATTTGGCATGCGGGG
CCCTTTGCAACCATTAATGGATGCCGCCTGGGCCGCCTACCTTCCTTCAT
GACGGTCGAGTGGGTAGATATCAATGCAGGCCTGGGCCAATCAATGCTTC
TGCTTGACACATTGGTGCGACGAGCGGGCTTTAGATTCCGGGACCACCAG
CTGATGCCCTTGGGTTCATTCTCCAAAATTATTAAACTGCCCAGGGGACG
AGAGGAGGCGGGTTTGGTACCCAGCAGTCCCCGCGCCAGCGGCGGTAACG
CGTTGAATCTGTACTATGACGAGGCCAATCTGGTTTTCTTCCCCCGCCGA
AATCTGAACGCGGCACTGGTCGCGTTTCTGCGGTGCGTAGAGGAGTTTGG
GACATATGTCGAGCAGCAGGACCCGACTCTTCGCCTGCCACATCGCATCC
AAGACGGCGGGAAAGTGGGCGGGCTGTCCATAAGTCTTATTCAGGGGGAA
GAAGAAACGTGGACGCGAGCGCTAAAATATCTGCTGACGGATCTCAAGTG
GCTGTTGGCCTGGAGTGCAAAACGCGTGGCGACTTGA
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Synonyms
Publications