NO11G01000, NO11G01000 (gene) Nannochloropsis oceanica

Overview
NameNO11G01000
Unique NameNO11G01000
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3897
Alignment locationchr11:376418..380314 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:376418..380314 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO11G01000 vs. NCBI_GenBank
Match: EWM25126.1 (hypothetical protein Naga_100016g41 [Nannochloropsis gaditana])

HSP 1 Score: 79.7 bits (195), Expect = 6.500e-11
Identity = 187/734 (25.48%), Postives = 268/734 (36.51%), Query Frame = 0 
Query:    1 MDDLNPFRAQRRLARTPPLKPKV-----PVAAVEAPPLWPKVQSPPAQNMHHFVPKGPAITTQHHQQPRMVHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTAAYEKNETAAAESP---GSLRTTTTKIVTKTAILGEAQASGTPPLVETQAAAPAPLPEHINLATPTTTT-----AVTAMSDTTVDPKQAQDVSSVVTSNEANSPLP------------------QYSVAEPMVSVQSTEELVVKEPPSLEVQKKVNFVEAALPVAKAQHEWQ----QXXXXXXXXSEHDVSATTFVTPSVEKALPSSPPAVSSXXXSAAFQRPAYPXXXXXAV-APWTAPDPPSRDAPSARSLITNILSSASSFSRAPIRTTTAASTTCIATVSPRMAEQPLGAKVSAPAPGISTKTVSQPSPSLPAAQVAFSIRNFTQSLKKGPPIAEIKPVVVTVDLTSTQATVKSMEEQEEDALDAPIAMVDMSSSVQSAEGKAMATTSALPAVLT-FMPSAPAXXXXXXXXXXXXQTEVVVKETPEEEDLVTAAKATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLKERCELTASVRAFDRLCELERRLKIKLVHQEAASYDARSTYLRDYRTMCSFGRTVSLKAFELMGRVK 698
            MDD+NPF+AQRRLARTPP KPK       ++A+ AP       + P+Q     V + P +            XXXXXXXXXXXXXXX                                          AA E      A S    GSL     +I+ +     EA A+   P ++ +  A       +++ T +           ++ D    P  A D+  +  ++E     P                   YS ++P   +    + V+       + K VN    A P ++++   Q    Q            + A+       E+ L      V+        Q+ +       A  AP   P+ P+  A SA +LI  +L+SAS+ + API+        C     P   E  LG         I ++ +S+P  +    ++AF  R FT SLKKG       P  V   ++S   +     E E DA  A ++ + ++S  Q  +  A +  +A PA +   +  AP+                  KE    +  VT AKA                                                                                                QLK RC+LTASV AFDRLCE ER +KIKL+++EA SY ARSTYL DY TMC+FGR +S+K+FELMGRVK
Sbjct:    1 MDDINPFKAQRRLARTPPPKPKAHAPVEAISALAAPTAHHDKLTKPSQAQQPKVMRSPVLAXXXXXXXXXXXXXXXXXXXXXXXXXXVTPCVEVDHSDFSSVPVSALSVARPAEDICSISEDK-----LAAKEVGAAVMATSSTHNGSLARNGFQIILR----AEAPAATMAPTLDHETGAEKSAKCLVSIETSSEDVKEGPCLAPSLGDNEASP-VATDLELIDPAHEGEKSSPPAEDKGARSLNAQLAPDWPYSDSDP---IAEASQRVLASGTDKVLDKTVNSPGGAAPSSRSRISGQSPPAQPTGEQNPCQGGGMDASELCATGSERKLDHVSGIVAPPHSLTNSQKHSPASLPPLATSAPSPIPNRPAESACSATTLIAKLLASASTSNSAPIKRGGIPPVACEGEKDPFPVETYLG------RGQIPSQAISRPVTN----KLAFDFRTFTSSLKKGASTTNSVP-GVNQAVSSALGSATQDLEAESDACQATLSNM-VTSEAQKLDIDAKSHHTAHPAAINPELHGAPSK-----------------KEAKTGQSAVTEAKANLSLHEKELQAELAGLRDSLAKQKANSQRLMETWSDAQQALKESGAELCNVQRERRRLSVNVSRLTRDLTCTKERIPPLIVENRKARSDVYRIKCEQLKARCQLTASVCAFDRLCERERSVKIKLLYEEATSYGARSTYLHDYSTMCAFGRKISIKSFELMGRVK 692
The following BLAST results are available for this feature:
BLAST of NO11G01000 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25126.16.500e-1125.48hypothetical protein Naga_100016g41 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002172NSK002172Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G01000.1NO11G01000.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590988gene_4974Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100016g41gene5380Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G01000.1NO11G01000.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G01000 ID=NO11G01000|Name=NO11G01000|organism=Nannochloropsis oceanica|type=gene|length=3897bp
ACAGGCGCCATTACCCCTTCACTGCTTCGCCTGATCTCGCCATCATAACA
ATATACTATCTTCCTGCGCAATCAAGCAGATGGACGACCTCAATCCCTTT
CGGGCACAACGCAGgtaagttccacaagcgtaagagtgaagtgaattgat
tgctatggtactaacccgccattaaacaattcactaccgcccacagGCTG
GCGCGCACACCGCCATTGAAGCCGAAAGTGCCTGTAGCGGCGGTCGAAGC
CCCGCCGCTTTGGCCCAAAGTTCAGTCGCCGCCAGCCCAGAACATGCACC
ACTTTGTGCCAAAGGGACCAGCTATAACTACGCAGCATCACCAGCAACCG
AGGATGGTGCACTCCCCTCCTTTTTTAGCGGCACAGCAACAACAGCAGAA
GGTGGTGCGCTCCCCTCCCGTTCCCACTCTTGCCCGCCTTGCCGCCCGTC
TGGCCGCAGCTACTGAGGCGCCTGTCGCTGCCCGCATGTCCTCCTTGCTC
GAAACCCCCGAGCTAGCGCCCTCCGCGGTAACAGCAGCGTATGAGAAGAA
CGAGACTGCAGCGGCCGAGAGTCCGGGCAGCCTTCGTACCACTACCACCA
AAATCGTCACAAAAACTGCCATACTGGGGGAAGCGCAAGCATCCGGCACC
CCACCCCTCGTCGAGACGCAGGCTGCGGCTCCTGCGCCGCTTCCCGAGCA
CATCAATTTAGCGACGCCTACTACCACGACGGCTGTCACCGCGATGAGCG
ACACGACAGTCGACCCCAAGCAGGCGCAAGACGTGTCTTCCGTCGTCACG
AGCAATGAAGCAAATTCCCCGCTGCCACAGTATTCAGTAGCAGAACCAAT
GGTGTCGGTCCAATCAACGGAAGAGCTCGTCGTGAAGGAACCGCCGTCAT
TAGAAGTGCAGAAGAAGGTCAACTTCGTGGAGGCCGCATTGCCGGTTGCC
AAAGCGCAACATGAGTGGCAGCAGCACCACCAGCAGCAAGAGCAACGATC
TGAGCATGACGTCTCGGCGACAACCTTTGTCACTCCGTCCGTCGAAAAAG
CGTTGCCATCTTCGCCGCCCGCGGTCTCCTCCCCGCCTGTTTCTGCAGCT
TTCCAGCGACCTGCTTATCCTATGCCCGCCATGCCCGCGGTGGCGCCATG
GACTGCCCCGGACCCACCCTCTCGAGATGCCCCCTCGGCGAGAAGCTTGA
TTACCAACATCCTTTCCTCCGCCTCATCATTCTCAAGGGCCCCGATCAGG
ACGACGACTGCCGCCTCGACGACATGCATAGCGACAGTCTCCCCCCGCAT
GGCGGAGCAGCCCTTGGGTGCCAAAGTTTCTGCTCCTGCTCCCGGCATAT
CCACAAAAACGGTCAGCCAGCCCTCTCCATCTTTGCCGGCGGCGCAAGTG
GCCTTCAGCATTCGCAACTTCACCCAGAGCCTGAAAAAGGGCCCCCCAAT
CGCCGAAATAAAGCCGGTAGTTGTGACAGTCGATCTTACCAGCACCCAAG
CGACAGTAAAATCCATGGAGGAACAAGAGGAGGACGCGTTGGATGCCCCT
ATTGCCATGGTGGATATGTCCTCTTCTGTACAGTCTGCGGAGGGCAAAGC
CATGGCTACTACTAGCGCCCTTCCTGCCGTTCTGACTTTCATGCCTTCTG
CTCCTGCTTCTGTTCCTGCTGCTGCTCCTGTTTCAGCGGCGGCGCAAACG
GAGGTGGTGGTAAAAGAGACGCCTGAAGAGGAAGACCTGGTGACGGCGGC
CAAGGCCACACTGACGCAGCAGGAGGCGGAGCTGCAGGACGAACTAGCCA
GGTTGCGTGCGGAGTTGATGCAGCAAAAGGCCGAGTCACAGCGTTTAATG
GAATCCTGGACACAAGCCCAGGAAGCGCTCAATGAGTCGGGCGCCGAATT
GAATGGCGTGCAGAGGGAGCGACGACGCTTGAGCGTGGACGTGAGCCGTC
TCACCCAGAATTTGACGACGACCGAGGAGCGCATTCCGCTGCTCTTGGAG
GAAACGGATAAAGTCCGTATGGAGGCCCACCGCATAAAAATGGAACAGCT
GAAGGAGCGGTGTGAGCTCACTGCCTCGGTCCGCGCCTTTGACCGGCTGT
GTGAGCTGGAACGGCGACTCAAGATCAAGCTCGTACACCAAGAGGCAGCC
TCCTACGACGCACGATCAACCTATTTGCGCGACTACAGAACCATGTGCTC
TTTTGGACGCACTGTGTCACTTAAGGCCTTTGAGCTGATGGGTCGGGTAA
AGGAGGGTGTGGGCAGGGTGAAGGGCGCCATGCAGGTCCAGCGTGGGGAG
CTGCAAAAGCAAGCGGCCGAGGCTAGCCAGCAGGCTGCCCACGCCTCAAA
AGTGTCGGCGGCTGAGATCATCCATCTTGCGAATCGTGAAGTAGATCAGC
AAAAGACGCTACAGAAGGTGGAAGAGGGAAAAAAGAAAGCTGAAAAACGG
CTGGTTGAGGCGGAAAAGCGCGCAAGCGAGGAGGTTCGGCGCCTGGAGAG
CATGGTGTCGTCCCGCGGAAACGAAATCAAGAAGTTGGAGGACGAGTTGA
AAAAGCTTCGTCGCGATGGGTCGAAAAGGGCAGCGCTTGCAGCCAAGGCA
GCGAAGGCGGTAGTCAGCAACAAGATGAAGGCAGCGCAGAAGACTGTGAA
GAAGGCAGAGGAAAAGACAGAGGAAGAAGACAGGGAAGAGGACGAGCAGC
AGCAGCAGCAGCAGCATGAAGAGGAGAGAGAAGAGCCGGAGGATGAAGAC
GTGCCTCTTGTAGCGACCAAGGCCAAAGGCAGCAGAAAGCGTACCACGAG
CAAAGCCAGACTGGAGAAAGCCTCCGCGCCCAAAAAGATTGCTCCACGCC
GCCAACCGAAAAACAGGGCAGCAGTGAGGTCGGCACCCGTGTCCCAGCGG
CAGGACGTCGAGGCAGAGCAAGTTGAAGCGGTGAAGACGACCCCAGTAGT
GGCGACGATGGTCACAGCACATTCTTCTTCTTCCTCTTCAGGTCTACCAT
TCTCGTTTGCCGAGGCCGTGGATGCTATTCCGGACGTCATGGAGGCCCAT
GCCGACAAGGATGTCGAAGAGGAGGTTCTTCCCGTCTCCAAGCGCGCCGC
ATTCCGTGCTTCAACCAACAAGCGTGTAATGCAGGAGATGCAATCAGAGG
AGCAAACGACACAAGCAAGCGAGAACTCGCCGGCCGCACCTTCCTATGTC
AAGAGATCCCGCGGTGCCTCTCTGTCTGAGCCGGTACAGGAGCTGACAGC
TATGGCGAGCCCGCAAGCCCCTGCAGTCACAACTATTAAATCTCTGCGGC
GTAGATCCTCGCGCAATAAGAATGACTTACCGGTAGCCTTGCATGCTGCA
GCTGCGCCGCCCCTGGGGGAGCAGTCAAAGAATGCGGTGAACGAGCAGGC
TCAGGTGCCCACCTTTGCGCCGGTCACCATGAAGAAGCCCGCGGCCGTGG
TAAAGGCTCCCAGTGCGGGGCCTTCTGCGGCCCCTTGCACGACATCCATG
ACAACCATTAAGCCCGCGGCAAAATCCAGCACATTGAAGCACTCGCAGGG
ATCCAAGAAGAATACGATCTTCTCCACATTCATTAATAAGGGGGCTATCC
CCAAGCTTAAAAAGCAAACATAGCCTGTGTGGGAAGCGTGTATCTTGCGT
GTATCTTGTATGTACTGGTACGTTGATAAGGCTGATGGGTGGATCGATCG
AGGTATGGAAAGAGAGTATTGGTCAAGAAGACTGAGCGAATGAATATTTA
AATTTAAAGACAAAGAAGGGGTACAAGCAAATGAGAACAACAAATGTGGA
AAAGGACACAACGAACCGTAGAGACTTAAGTCGGACAAAGCACAAAGATC
CGGTAGGAGAAGAAATTAGCACGGACATGTAAAAGTATTTACGAACA
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protein sequence of NO11G01000.1

>NO11G01000.1-protein ID=NO11G01000.1-protein|Name=NO11G01000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1154bp
MDDLNPFRAQRRLARTPPLKPKVPVAAVEAPPLWPKVQSPPAQNMHHFVP
KGPAITTQHHQQPRMVHSPPFLAAQQQQQKVVRSPPVPTLARLAARLAAA
TEAPVAARMSSLLETPELAPSAVTAAYEKNETAAAESPGSLRTTTTKIVT
KTAILGEAQASGTPPLVETQAAAPAPLPEHINLATPTTTTAVTAMSDTTV
DPKQAQDVSSVVTSNEANSPLPQYSVAEPMVSVQSTEELVVKEPPSLEVQ
KKVNFVEAALPVAKAQHEWQQHHQQQEQRSEHDVSATTFVTPSVEKALPS
SPPAVSSPPVSAAFQRPAYPMPAMPAVAPWTAPDPPSRDAPSARSLITNI
LSSASSFSRAPIRTTTAASTTCIATVSPRMAEQPLGAKVSAPAPGISTKT
VSQPSPSLPAAQVAFSIRNFTQSLKKGPPIAEIKPVVVTVDLTSTQATVK
SMEEQEEDALDAPIAMVDMSSSVQSAEGKAMATTSALPAVLTFMPSAPAS
VPAAAPVSAAAQTEVVVKETPEEEDLVTAAKATLTQQEAELQDELARLRA
ELMQQKAESQRLMESWTQAQEALNESGAELNGVQRERRRLSVDVSRLTQN
LTTTEERIPLLLEETDKVRMEAHRIKMEQLKERCELTASVRAFDRLCELE
RRLKIKLVHQEAASYDARSTYLRDYRTMCSFGRTVSLKAFELMGRVKEGV
GRVKGAMQVQRGELQKQAAEASQQAAHASKVSAAEIIHLANREVDQQKTL
QKVEEGKKKAEKRLVEAEKRASEEVRRLESMVSSRGNEIKKLEDELKKLR
RDGSKRAALAAKAAKAVVSNKMKAAQKTVKKAEEKTEEEDREEDEQQQQQ
QHEEEREEPEDEDVPLVATKAKGSRKRTTSKARLEKASAPKKIAPRRQPK
NRAAVRSAPVSQRQDVEAEQVEAVKTTPVVATMVTAHSSSSSSGLPFSFA
EAVDAIPDVMEAHADKDVEEEVLPVSKRAAFRASTNKRVMQEMQSEEQTT
QASENSPAAPSYVKRSRGASLSEPVQELTAMASPQAPAVTTIKSLRRRSS
RNKNDLPVALHAAAAPPLGEQSKNAVNEQAQVPTFAPVTMKKPAAVVKAP
SAGPSAAPCTTSMTTIKPAAKSSTLKHSQGSKKNTIFSTFINKGAIPKLK
KQT*
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Synonyms
Publications