NO11G00980, NO11G00980 (gene) Nannochloropsis oceanica

Overview
NameNO11G00980
Unique NameNO11G00980
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1419
Alignment locationchr11:369084..370502 -

Link to JBrowse

Properties
Property NameValue
DescriptionZinc finger, RanBP2-type
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:369084..370502 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036443Znf_RanBP2_sf
IPR001841Znf_RING
Homology
[Close]
BLAST of NO11G00980 vs. NCBI_GenBank
Match: OAY66246.1 (E3 ubiquitin-protein ligase [Ananas comosus])

HSP 1 Score: 78.2 bits (191), Expect = 7.700e-11
Identity = 31/63 (49.21%), Postives = 43/63 (68.25%), Query Frame = 0 
Query:  407 STELERMRRESMGNARDCSVCMEEFELGDVTRRLPCLHTYHKACIDRWLLQCNAMCPICKVPI 470
            STEL +++ E+     +C VC+  F  G+ TR LPC H +H+AC+DRWLL C   CP+C+VPI
Sbjct:   33 STELLKLKAEA---GEECCVCLSRFGEGEATRELPCRHLFHRACVDRWLLSCRRTCPLCRVPI 92
[Close]
BLAST of NO11G00980 vs. NCBI_GenBank
Match: OAY66250.1 (E3 ubiquitin-protein ligase [Ananas comosus])

HSP 1 Score: 78.2 bits (191), Expect = 7.700e-11
Identity = 31/63 (49.21%), Postives = 43/63 (68.25%), Query Frame = 0 
Query:  407 STELERMRRESMGNARDCSVCMEEFELGDVTRRLPCLHTYHKACIDRWLLQCNAMCPICKVPI 470
            STEL +++ E+     +C VC+  F  G+ TR LPC H +H+AC+DRWLL C   CP+C+VPI
Sbjct:   23 STELLKLKAEA---GEECCVCLSRFGEGEATRELPCRHLFHRACVDRWLLSCRRTCPLCRVPI 82
[Close]
BLAST of NO11G00980 vs. NCBI_GenBank
Match: XP_002290665.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED92417.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 77.8 bits (190), Expect = 1.000e-10
Identity = 41/99 (41.41%), Postives = 58/99 (58.59%), Query Frame = 0 
Query:  374 MSYEDLLNLFGPGHEPQK--ASEVAVSALPEVTVSS-TELERMRRESMGNARDCSVCMEEFELGDVTRRLPCLHTYHKACIDRWLLQCNAMCPICKVPI 470
            MSYE LL +FG G+E +   A+  A+S+LP   +   T+L   +RE       C +C+EEF+ GD    LPCLH +H+ C+ RW L  N  CP+CK  +
Sbjct:  306 MSYERLLEVFGDGNENRNLAATPSAISSLPFSKIDDPTKLPADKRE-------CCICLEEFKTGDERTTLPCLHGFHRLCVTRW-LGSNGTCPVCKTAV 396
[Close]
BLAST of NO11G00980 vs. NCBI_GenBank
Match: XP_009387746.1 (PREDICTED: uncharacterized protein LOC103974609 isoform X5 [Musa acuminata subsp. malaccensis] >XP_009387747.1 PREDICTED: uncharacterized protein LOC103974609 isoform X5 [Musa acuminata subsp. malaccensis])

HSP 1 Score: 77.8 bits (190), Expect = 1.000e-10
Identity = 38/95 (40.00%), Postives = 54/95 (56.84%), Query Frame = 0 
Query:  372 DRMSYEDLLNLFGPGHEPQKASEVAVSALPEVTVSSTELERMRRESMGNARDCSVCMEEFELGDVTRRLPCLHTYHKACIDRWLLQCNAMCPICK 467
            D   YE LL L    H+   ASE  ++ LP+ TV +  +E           +C+VC+E+  +GD+ R LPCLH +HK CID+WL +    CP+CK
Sbjct:  673 DENDYETLLALDENNHQHSGASENQINNLPQSTVQADTIE-----------ECAVCLEKPSIGDIIRHLPCLHKFHKDCIDQWLRR-KTSCPVCK 755
[Close]
BLAST of NO11G00980 vs. NCBI_GenBank
Match: XP_018677419.1 (PREDICTED: uncharacterized protein LOC103974609 isoform X2 [Musa acuminata subsp. malaccensis])

HSP 1 Score: 77.8 bits (190), Expect = 1.000e-10
Identity = 38/95 (40.00%), Postives = 54/95 (56.84%), Query Frame = 0 
Query:  372 DRMSYEDLLNLFGPGHEPQKASEVAVSALPEVTVSSTELERMRRESMGNARDCSVCMEEFELGDVTRRLPCLHTYHKACIDRWLLQCNAMCPICK 467
            D   YE LL L    H+   ASE  ++ LP+ TV +  +E           +C+VC+E+  +GD+ R LPCLH +HK CID+WL +    CP+CK
Sbjct:  703 DENDYETLLALDENNHQHSGASENQINNLPQSTVQADTIE-----------ECAVCLEKPSIGDIIRHLPCLHKFHKDCIDQWLRR-KTSCPVCK 785
[Close]
BLAST of NO11G00980 vs. NCBI_GenBank
Match: XP_003055036.1 (predicted protein [Micromonas pusilla CCMP1545] >EEH60288.1 predicted protein [Micromonas pusilla CCMP1545])

HSP 1 Score: 77.4 bits (189), Expect = 1.300e-10
Identity = 45/113 (39.82%), Postives = 66/113 (58.41%), Query Frame = 0 
Query:  362 MTMIQQQDAVDRMSYEDLLNLFGPGHE-PQKASEVAVSALPEVTVSSTELERMRRESMGNARDCSVCMEEFELGDVTRRLP-CLHTYHKACIDRWLLQCNAMCPICKVPIAQT 473
            MT +   D VD M+YE+LL  FGPG E    A   A+ A+P  T+++    +     +  A  C VC++EF +G+  + LP C H +H  CID+WLL  NA CP+C+V + +T
Sbjct:    1 MTSLVAAD-VDAMTYEELLETFGPGVEGVAGAPAAAIDAVPTSTLAADYAWKDAISDV-EASSCRVCLDEFRVGEKVKALPSCGHRFHAPCIDKWLLGRNA-CPMCRVGLPET 110
[Close]
BLAST of NO11G00980 vs. NCBI_GenBank
Match: XP_019166072.1 (PREDICTED: uncharacterized protein LOC109161945 isoform X1 [Ipomoea nil])

HSP 1 Score: 77.4 bits (189), Expect = 1.300e-10
Identity = 43/106 (40.57%), Postives = 55/106 (51.89%), Query Frame = 0 
Query:  365 IQQQDAVDRMSYEDLLNLFGPGHEPQKASEVAVSALPEVTVSSTELERMRRESMGNARDCSVCMEEFELGDVTRRLPCLHTYHKACIDRWLLQCNAMCPICKVPIA 471
            +Q Q   +   YE LL L    H+   AS   ++ LPE TV +  LE            CS+C+E   +GD  R LPCLH +HK CID W LQ  + CP+CK  IA
Sbjct:  675 LQTQRDFNENDYEMLLALDENNHQHAGASMHQINGLPESTVQNENLEEA----------CSICLENPTMGDTIRHLPCLHKFHKDCIDPW-LQRRSSCPVCKSSIA 769
[Close]
BLAST of NO11G00980 vs. NCBI_GenBank
Match: XP_019166073.1 (PREDICTED: uncharacterized protein LOC109161945 isoform X2 [Ipomoea nil] >XP_019166074.1 PREDICTED: uncharacterized protein LOC109161945 isoform X2 [Ipomoea nil] >XP_019166075.1 PREDICTED: uncharacterized protein LOC109161945 isoform X2 [Ipomoea nil] >XP_019166076.1 PREDICTED: uncharacterized protein LOC109161945 isoform X2 [Ipomoea nil])

HSP 1 Score: 77.4 bits (189), Expect = 1.300e-10
Identity = 43/106 (40.57%), Postives = 55/106 (51.89%), Query Frame = 0 
Query:  365 IQQQDAVDRMSYEDLLNLFGPGHEPQKASEVAVSALPEVTVSSTELERMRRESMGNARDCSVCMEEFELGDVTRRLPCLHTYHKACIDRWLLQCNAMCPICKVPIA 471
            +Q Q   +   YE LL L    H+   AS   ++ LPE TV +  LE            CS+C+E   +GD  R LPCLH +HK CID W LQ  + CP+CK  IA
Sbjct:  669 LQTQRDFNENDYEMLLALDENNHQHAGASMHQINGLPESTVQNENLEEA----------CSICLENPTMGDTIRHLPCLHKFHKDCIDPW-LQRRSSCPVCKSSIA 763
[Close]
BLAST of NO11G00980 vs. NCBI_GenBank
Match: XP_012209522.1 (hypothetical protein SPRG_15094 [Saprolegnia parasitica CBS 223.65] >KDO19760.1 hypothetical protein SPRG_15094 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 77.0 bits (188), Expect = 1.700e-10
Identity = 41/100 (41.00%), Postives = 55/100 (55.00%), Query Frame = 0 
Query:  372 DRMSYEDLLNLFGPGHEPQK---ASEVAVSALPEVTVSSTELERMRRESMGNARDCSVCMEEFELGDVTRRLPCLHTYHKACIDRWLLQCNAMCPICKVP 469
            D   YE LL L    H   K   ASE  +  LP VTV+ T L+  +  +  +A  CS+C+E+  +G + R +PC H +H  CID WL +  A CPICK P
Sbjct:   96 DSNDYEQLLQL--DEHNVAKSHGASEGDIDRLPVVTVTETMLQGHKEATGSDAIQCSICLEDLAVGALARMVPCFHRFHPECIDLWLFE-KAECPICKFP 192
[Close]
BLAST of NO11G00980 vs. NCBI_GenBank
Match: XP_015692280.1 (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC102703674 [Oryza brachyantha])

HSP 1 Score: 76.3 bits (186), Expect = 2.900e-10
Identity = 38/99 (38.38%), Postives = 52/99 (52.53%), Query Frame = 0 
Query:  368 QDAVDRMSYEDLLNLFGPGHEPQKASEVAVSALPEVTVSSTELERMRRESMGNARDCSVCMEEFELGDVTRRLPCLHTYHKACIDRWLLQCNAMCPICK 467
            Q  +D   Y+ LL L    H+   ASE  ++ LP+  V S  +E            C+VC+E   +GD  RRLPC H +HK CID WL +   +CP+CK
Sbjct:  628 QPNIDLNDYDALLALDENNHQHAGASESQINNLPQSVVQSNNIE----------EPCAVCLENPSIGDTIRRLPCFHMFHKECIDEWLRR-KKLCPVCK 715
The following BLAST results are available for this feature:
BLAST of NO11G00980 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
OAY66246.17.700e-1149.21E3 ubiquitin-protein ligase [Ananas comosus][more]
OAY66250.17.700e-1149.21E3 ubiquitin-protein ligase [Ananas comosus][more]
XP_002290665.11.000e-1041.41predicted protein [Thalassiosira pseudonana CCMP13... [more]
XP_009387746.11.000e-1040.00PREDICTED: uncharacterized protein LOC103974609 is... [more]
XP_018677419.11.000e-1040.00PREDICTED: uncharacterized protein LOC103974609 is... [more]
XP_003055036.11.300e-1039.82predicted protein [Micromonas pusilla CCMP1545] >E... [more]
XP_019166072.11.300e-1040.57PREDICTED: uncharacterized protein LOC109161945 is... [more]
XP_019166073.11.300e-1040.57PREDICTED: uncharacterized protein LOC109161945 is... [more]
XP_012209522.11.700e-1041.00hypothetical protein SPRG_15094 [Saprolegnia paras... [more]
XP_015692280.12.900e-1038.38PREDICTED: LOW QUALITY PROTEIN: uncharacterized pr... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002175NSK002175Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G00980.1NO11G00980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590981gene_4972Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100016g44gene5377Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G00980.1NO11G00980.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G00980 ID=NO11G00980|Name=NO11G00980|organism=Nannochloropsis oceanica|type=gene|length=1419bp
ATGGACTCGGACAACTATGACACATGTCCCACTTGCAGCACCAATTACCC
TCCTGTCAACGCGGCCCTACATCAGGCCCGATGTCCAAGGCAGCACCAGC
AGGCACCGCACCACCGTATGCATGTTGCGGCTTCCTCCGCTACCGCACCA
TCGCGGGCTTCCCGAGAGCAGCAGAAGCAGCAGCAGCAAGAGCACGACCA
CGAGGGAGAGGAGGAGCACGAGAAGGAGAAGGAGGGGCACGAGAAGGAGG
AGGAGGGAGAGGAGAGGGAGGAAGCAACAACTATCGACCTGACGGGTAGC
AGCCCCTTAAATTCAGGCAGGCCCACCCTCCCAAGCATCCATGCTCCGGC
GGCCGCGGCAGCGATTGCGATGGCGGGAAACAGGAACCTTGACAGGGGAC
GGGATGATGAGGTGGTATACGATAGCGAGGATGATCGCAGCAGTGATATG
GCCGGTTCGGGGGAGGCGGCAGGCCGTCCAAAGGACGATGGGGTGGGCGG
AGGTGGCAGGCTTAAGGGGGTATGCAACGAAGAGGATAACGAGGAGGAGG
AAGACGGCGTTCAAATTCAGTGCGCCACTTGCACTTTTTTTAACGAACCA
GACATGGACATCTGTCAGATGTGTATGGCACCGCTGACCAATCAGGCCGG
TGGTGGCGGGGGCGGTGGCATGGAGGAACAGGAAAATGATGTGCGAGAAC
TTAACGCGCACGCCCGATGGACTTGTCCATTGTGTACGTACGGCGGTAAT
ACGAGAGGCAATTGGATTTGCCAAGCCTGTGAGGTGGGGCGGCCCCGACG
TCAAGATATGCTTGGCTCGACGAACAATGACGGGTACGTAATGGTATCGC
CCGACGCGCTGAGTCGGGGCAGCGGAGGGTGGGGGAGGCAAAGAGGCGGC
GGGAGAGGAGGAGCTCAGGGGATGCTGGAGGCTGTGGTAACGGGGGCATT
GTTTGGTGGAGGTGCAGCGGGATTAGGATCGGCCCTGGCAGGAGGCACAA
GAGCGGATAGTCATCGTCGCATGCTGATGGGCTCCCTGGTGGGAGGGTTA
GGGGGAGGGATCTTGGGCTCTCAGTTCCAGCAAATGACGATGATCCAACA
GCAGGACGCTGTCGACAGAATGAGCTACGAGGACTTGCTCAATTTATTCG
GTCCTGGGCATGAGCCGCAGAAGGCGAGTGAGGTCGCGGTCAGCGCACTT
CCTGAGGTCACGGTGAGCAGCACGGAACTCGAGAGGATGCGGCGGGAAAG
CATGGGGAATGCGCGCGACTGCAGTGTGTGTATGGAAGAATTTGAGCTGG
GTGACGTCACTAGGCGCCTGCCCTGCTTGCACACGTATCACAAGGCGTGC
ATTGACCGGTGGCTACTTCAGTGCAATGCCATGTGCCCTATCTGCAAGGT
CCCCATTGCCCAGACATGA
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protein sequence of NO11G00980.1

>NO11G00980.1-protein ID=NO11G00980.1-protein|Name=NO11G00980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=473bp
MDSDNYDTCPTCSTNYPPVNAALHQARCPRQHQQAPHHRMHVAASSATAP
SRASREQQKQQQQEHDHEGEEEHEKEKEGHEKEEEGEEREEATTIDLTGS
SPLNSGRPTLPSIHAPAAAAAIAMAGNRNLDRGRDDEVVYDSEDDRSSDM
AGSGEAAGRPKDDGVGGGGRLKGVCNEEDNEEEEDGVQIQCATCTFFNEP
DMDICQMCMAPLTNQAGGGGGGGMEEQENDVRELNAHARWTCPLCTYGGN
TRGNWICQACEVGRPRRQDMLGSTNNDGYVMVSPDALSRGSGGWGRQRGG
GRGGAQGMLEAVVTGALFGGGAAGLGSALAGGTRADSHRRMLMGSLVGGL
GGGILGSQFQQMTMIQQQDAVDRMSYEDLLNLFGPGHEPQKASEVAVSAL
PEVTVSSTELERMRRESMGNARDCSVCMEEFELGDVTRRLPCLHTYHKAC
IDRWLLQCNAMCPICKVPIAQT*
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Synonyms
Publications