NO11G00970, NO11G00970 (gene) Nannochloropsis oceanica

Overview
NameNO11G00970
Unique NameNO11G00970
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1718
Alignment locationchr11:367111..368828 +

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Properties
Property NameValue
DescriptionPhd zinc finger-containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:367111..368828 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011011Znf_FYVE_PHD
IPR019787Znf_PHD-finger
IPR001965Znf_PHD
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
Homology
[Close]
BLAST of NO11G00970 vs. NCBI_GenBank
Match: PIA13111.1 (hypothetical protein COEREDRAFT_78156, partial [Coemansia reversa NRRL 1564])

HSP 1 Score: 69.7 bits (169), Expect = 2.600e-8
Identity = 35/81 (43.21%), Postives = 42/81 (51.85%), Query Frame = 0 
Query:   72 EDCCVICHQEEFDAQVNEIIYCDRCDLGFHQQCYGVPKVPDGDFFCEFC--SVAKEASDRKKNAPAAVCELCRQRGGGLVK 151
            E  C +C  EE D   N I++CD C+L  HQ CYGVP +P+G + C  C  S AKE S          C LC Q GG   K
Sbjct:  463 ESACAVCGSEECD-NTNAIVFCDGCNLAVHQDCYGVPYIPEGQWLCRKCMLSPAKEVS----------CVLCPQLGGAFKK 532
[Close]
BLAST of NO11G00970 vs. NCBI_GenBank
Match: EJK75809.1 (hypothetical protein THAOC_02457, partial [Thalassiosira oceanica])

HSP 1 Score: 68.9 bits (167), Expect = 4.500e-8
Identity = 34/93 (36.56%), Postives = 51/93 (54.84%), Query Frame = 0 
Query:   75 CVICHQEEFDAQVNEIIYCDRCDLGFHQQCYGVPKVPDGDFFCEFC---SVAKE-ASDRKKNAPAA-------VCELCRQRGGGLVKAWIVDP 157
            C +C+  E     N+II+CD C++  HQ+CYG+  +P G+FFC  C    V KE  + RK+  P         +CELC +R G  V+   ++P
Sbjct:  301 CDVCNDGEVTLN-NQIIFCDACNVAVHQKCYGIDHIPSGNFFCRTCIHFDVDKEYLAARKRGGPPVKLTRHPIICELCPRRQGAFVQVDSLEP 392
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BLAST of NO11G00970 vs. NCBI_GenBank
Match: ODV98477.1 (hypothetical protein PACTADRAFT_48230 [Pachysolen tannophilus NRRL Y-2460])

HSP 1 Score: 68.9 bits (167), Expect = 4.500e-8
Identity = 27/73 (36.99%), Postives = 42/73 (57.53%), Query Frame = 0 
Query:   66 GDRAKREDCCVICHQEEFDAQVNEIIYCDRCDLGFHQQCYGVPKVPDGDFFCEFCSVAKEASDRKKNAPAAVC 139
            G R + + CC +C++ E D   N I++CD CD+  HQ+CYGV  +P+G + C  C ++     RK  +P   C
Sbjct:  206 GGRPEEDQCCAVCNESECD-NSNAIVFCDGCDIAVHQECYGVVFIPEGQWLCRRCLIS-----RKNKSPCLFC 272
[Close]
BLAST of NO11G00970 vs. NCBI_GenBank
Match: XP_002772881.1 (helicase, putative [Perkinsus marinus ATCC 50983] >EER04697.1 helicase, putative [Perkinsus marinus ATCC 50983])

HSP 1 Score: 68.6 bits (166), Expect = 5.900e-8
Identity = 30/79 (37.97%), Postives = 47/79 (59.49%), Query Frame = 0 
Query:   73 DCCVICHQEEFDAQVNEIIYCDRCDLGFHQQCYGVPKVPDGDFFCEFCSVAKEASDRKKNA-PAAVCELCRQRGGGLVK 151
            D C+I  Q++ D   N I+ CD C+   HQ CY + +VP G ++C+FC+ A+E S  ++ A     C LC +R G L++
Sbjct:   26 DVCLIQDQDDEDGNPNLILICDACEAAVHQDCYAIARVPKGAWYCDFCTYARENSLSEEEARRERQCLLCPRRTGALLR 104
[Close]
BLAST of NO11G00970 vs. NCBI_GenBank
Match: ETI56199.1 (hypothetical protein F443_01198 [Phytophthora parasitica P1569])

HSP 1 Score: 68.6 bits (166), Expect = 5.900e-8
Identity = 30/80 (37.50%), Postives = 44/80 (55.00%), Query Frame = 0 
Query:   67 DRAKREDCCVICHQEEFDAQVNEIIYCDRCDLGFHQQCYGVPKVPDGDFFCEFCSVAKEASDRKKNAPAAVCELCRQRGG 147
            D A  +  CV+C   +   + N II+CDRC+L  HQ+CYG+ KVP  +F C+ C   +E  D  ++     C+LC    G
Sbjct:  707 DDAIDDGTCVVCFDGQ-SPETNPIIFCDRCELAVHQRCYGMAKVPSNEFICDRCRATREGLDPARD---VFCQLCSLSDG 782
[Close]
BLAST of NO11G00970 vs. NCBI_GenBank
Match: ETK96021.1 (hypothetical protein L915_01126 [Phytophthora parasitica] >ETL49381.1 hypothetical protein L916_01110 [Phytophthora parasitica] >ETO84940.1 hypothetical protein F444_01193 [Phytophthora parasitica P1976])

HSP 1 Score: 68.6 bits (166), Expect = 5.900e-8
Identity = 30/80 (37.50%), Postives = 44/80 (55.00%), Query Frame = 0 
Query:   67 DRAKREDCCVICHQEEFDAQVNEIIYCDRCDLGFHQQCYGVPKVPDGDFFCEFCSVAKEASDRKKNAPAAVCELCRQRGG 147
            D A  +  CV+C   +   + N II+CDRC+L  HQ+CYG+ KVP  +F C+ C   +E  D  ++     C+LC    G
Sbjct:  707 DDAIDDGTCVVCFDGQ-SPETNPIIFCDRCELAVHQRCYGMAKVPSNEFICDRCRATREGLDPARD---VFCQLCSLSDG 782
[Close]
BLAST of NO11G00970 vs. NCBI_GenBank
Match: ETM02431.1 (hypothetical protein L917_01080 [Phytophthora parasitica])

HSP 1 Score: 68.6 bits (166), Expect = 5.900e-8
Identity = 30/80 (37.50%), Postives = 44/80 (55.00%), Query Frame = 0 
Query:   67 DRAKREDCCVICHQEEFDAQVNEIIYCDRCDLGFHQQCYGVPKVPDGDFFCEFCSVAKEASDRKKNAPAAVCELCRQRGG 147
            D A  +  CV+C   +   + N II+CDRC+L  HQ+CYG+ KVP  +F C+ C   +E  D  ++     C+LC    G
Sbjct:  707 DDAIDDGTCVVCFDGQ-SPETNPIIFCDRCELAVHQRCYGMAKVPSNEFICDRCRATREGLDPARD---VFCQLCSLSDG 782
[Close]
BLAST of NO11G00970 vs. NCBI_GenBank
Match: ETM55704.1 (hypothetical protein L914_01116 [Phytophthora parasitica])

HSP 1 Score: 68.6 bits (166), Expect = 5.900e-8
Identity = 30/80 (37.50%), Postives = 44/80 (55.00%), Query Frame = 0 
Query:   67 DRAKREDCCVICHQEEFDAQVNEIIYCDRCDLGFHQQCYGVPKVPDGDFFCEFCSVAKEASDRKKNAPAAVCELCRQRGG 147
            D A  +  CV+C   +   + N II+CDRC+L  HQ+CYG+ KVP  +F C+ C   +E  D  ++     C+LC    G
Sbjct:  707 DDAIDDGTCVVCFDGQ-SPETNPIIFCDRCELAVHQRCYGMAKVPSNEFICDRCRATREGLDPARD---VFCQLCSLSDG 782
[Close]
BLAST of NO11G00970 vs. NCBI_GenBank
Match: XP_008890851.1 (hypothetical protein PPTG_01011 [Phytophthora parasitica INRA-310] >ETN24822.1 hypothetical protein PPTG_01011 [Phytophthora parasitica INRA-310])

HSP 1 Score: 68.6 bits (166), Expect = 5.900e-8
Identity = 30/80 (37.50%), Postives = 44/80 (55.00%), Query Frame = 0 
Query:   67 DRAKREDCCVICHQEEFDAQVNEIIYCDRCDLGFHQQCYGVPKVPDGDFFCEFCSVAKEASDRKKNAPAAVCELCRQRGG 147
            D A  +  CV+C   +   + N II+CDRC+L  HQ+CYG+ KVP  +F C+ C   +E  D  ++     C+LC    G
Sbjct:  707 DDAIDDGTCVVCFDGQ-SPETNPIIFCDRCELAVHQRCYGMAKVPSNEFICDRCRATREGLDPARD---VFCQLCSLSDG 782
[Close]
BLAST of NO11G00970 vs. NCBI_GenBank
Match: ETP26001.1 (hypothetical protein F441_01170 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 68.6 bits (166), Expect = 5.900e-8
Identity = 30/80 (37.50%), Postives = 44/80 (55.00%), Query Frame = 0 
Query:   67 DRAKREDCCVICHQEEFDAQVNEIIYCDRCDLGFHQQCYGVPKVPDGDFFCEFCSVAKEASDRKKNAPAAVCELCRQRGG 147
            D A  +  CV+C   +   + N II+CDRC+L  HQ+CYG+ KVP  +F C+ C   +E  D  ++     C+LC    G
Sbjct:  707 DDAIDDGTCVVCFDGQ-SPETNPIIFCDRCELAVHQRCYGMAKVPSNEFICDRCRATREGLDPARD---VFCQLCSLSDG 782
The following BLAST results are available for this feature:
BLAST of NO11G00970 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
PIA13111.12.600e-843.21hypothetical protein COEREDRAFT_78156, partial [Co... [more]
EJK75809.14.500e-836.56hypothetical protein THAOC_02457, partial [Thalass... [more]
ODV98477.14.500e-836.99hypothetical protein PACTADRAFT_48230 [Pachysolen ... [more]
XP_002772881.15.900e-837.97helicase, putative [Perkinsus marinus ATCC 50983] ... [more]
ETI56199.15.900e-837.50hypothetical protein F443_01198 [Phytophthora para... [more]
ETK96021.15.900e-837.50hypothetical protein L915_01126 [Phytophthora para... [more]
ETM02431.15.900e-837.50hypothetical protein L917_01080 [Phytophthora para... [more]
ETM55704.15.900e-837.50hypothetical protein L914_01116 [Phytophthora para... [more]
XP_008890851.15.900e-837.50hypothetical protein PPTG_01011 [Phytophthora para... [more]
ETP26001.15.900e-837.50hypothetical protein F441_01170 [Phytophthora para... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002176NSK002176Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G00970.1NO11G00970.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|49871gene_4971Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100016g45gene5376Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G00970.1NO11G00970.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G00970 ID=NO11G00970|Name=NO11G00970|organism=Nannochloropsis oceanica|type=gene|length=1718bp
ATGGCGTCCACAATgtaagtgctgcggcttatcaaccttcatgccaagag
atgttaggcccctcttttgtccaatcctcggaatgaaattcagaaacctg
cgactatagttggaaagcaaaagctgtttccccccacatgttactcccat
acagtccgcatggtctgcaggccagggtcgtcatatacccccaaccaatg
ttagacaattttgcttgctgttttctgttgatcgatgcatttaacgtaaa
aataagctggagagacacagcctatcctttaccaattgaaacgccgcctt
tccaaacctcacccctttgtgatcctcatttctcacgtttcgaaatcggg
aacattgaaaactaattacatagCATCGAGGCGAAGTGGGACGGCATCGA
AGAGGAAGACGACTTTGAGGACGTTATCCCACGCCAACAAGGCGAACGGG
AAATGGAAGATGCGGATAATAAACAGAATCAAGACCTGGCCGTCGCCGGG
CTGTTTTCCACCCATTTACCGCCACGAGCAGGGTGCGAATCAACGGGCCC
CATGGGAGACCGTGCCAAGCGCGAAGATTGCTGCGTCATTTGCCACCAAG
AGGAATTTGATGCGCAGGTGAATGAAATAATTTATTGTGATAGATGTGAT
TTGGGGTTCCATCAACAATGCTATGGTGTGCCAAAGGTCCCGGATGGTGA
TTTCTTTTGTGAATTCTGCAGTGTTGCCAAGGAGGCTTCCGACAGGAAGA
AGAATGCACCCGCAGCTGTGTGTGAGCTCTGCCGTCAACGAGGTGGGGGA
CTTGTGAAGGCCTGGATTGTGGACCCCGATGTGGACGAGAATCTGGAGGA
GGAGGAGGAGGAGGACAACGACGACGACGAATGGAACGAGAACGAGGAGG
AGGAAGATGAAGACGACGATGTCATGAGTGAATGCGTGGATGCAGATGCT
GTTGCTGCTGCATTGCGTGCGTCACCGCCATCTTTGTCTTGCCCATCGGC
TTTGCCAGCCTTTGTGCACAAGGTCTGTGCTTTGGCAGGCTGGAATCGAC
GGCCACGCCGGCTGGTGCGGTTCGTGGCGGGTACGAACGCTCAAGTGGCC
ATTTTGTCACGTGTTTTGGTGGCAAAGTATCGGTATGCCACGGCCAATGA
AGATGCTGCCGCCGCCCAATGGCAGTCAGTGGACATTGCCATGTGTGGTA
TCTGCTATTCTTCTGTTGGCTTGCTTATTCGTTGTCGCCACCACGATCCT
GAGAGTGAGTTTTTCAAGTGCTCGTTCTATGCTCATGCCGCTTGTGCCTT
CAATGCTGGTCAGGCCTCGCTCCTTTTGCACGACGTTCGGCAATCCCCCT
TAGTTCAGATATGGTGTGCCACGCACAAGCCTGGACCTTCTATCGAAAGG
CCGGGGGGAGAGGCCGTCGCGCGGTGCCTGGGTCTTCTCTTGCACCCTCC
GCCCGCAGCCGTCGAGGAGCACCAGCACCAGCAGTGGCAAGATCGGTCCC
GGCGCCAGCCACTTTTGCAACACTTGCTTTACGAGCGGAAGAGAGAAAGC
TACGGGCGCTTGGGGGGTTATATGGACGACAAATATAGTTTGCTGCAGCA
GCGGCTAGCATCGTCGCCTTCGGGGGCTGAGGGGGCTCGCCTGATCCTTT
GTTGGACGGATCGGGCAAAGGAGATTTATGCATGCCGGGAGCCTCATCCT
GCCACGCCCATCGTCTGA
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protein sequence of NO11G00970.1

>NO11G00970.1-protein ID=NO11G00970.1-protein|Name=NO11G00970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=453bp
MASTIIEAKWDGIEEEDDFEDVIPRQQGEREMEDADNKQNQDLAVAGLFS
THLPPRAGCESTGPMGDRAKREDCCVICHQEEFDAQVNEIIYCDRCDLGF
HQQCYGVPKVPDGDFFCEFCSVAKEASDRKKNAPAAVCELCRQRGGGLVK
AWIVDPDVDENLEEEEEEDNDDDEWNENEEEEDEDDDVMSECVDADAVAA
ALRASPPSLSCPSALPAFVHKVCALAGWNRRPRRLVRFVAGTNAQVAILS
RVLVAKYRYATANEDAAAAQWQSVDIAMCGICYSSVGLLIRCRHHDPESE
FFKCSFYAHAACAFNAGQASLLLHDVRQSPLVQIWCATHKPGPSIERPGG
EAVARCLGLLLHPPPAAVEEHQHQQWQDRSRRQPLLQHLLYERKRESYGR
LGGYMDDKYSLLQQRLASSPSGAEGARLILCWTDRAKEIYACREPHPATP
IV*
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Synonyms
Publications