NO11G00950, NO11G00950 (gene) Nannochloropsis oceanica

Overview
NameNO11G00950
Unique NameNO11G00950
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length800
Alignment locationchr11:364059..364858 +

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Properties
Property NameValue
DescriptionAppr-1-p processing enzyme family protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:364059..364858 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002589Macro_dom
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO11G00950 vs. NCBI_GenBank
Match: XP_002520862.1 (PREDICTED: macro domain-containing protein VPA0103 [Ricinus communis] >EEF41571.1 Protein LRP16, putative [Ricinus communis])

HSP 1 Score: 194.5 bits (493), Expect = 3.400e-46
Identity = 97/189 (51.32%), Postives = 130/189 (68.78%), Query Frame = 0
Query:   14 TRVFTLSDQTRLQIKVGDLTK----AAVGAIVNAANERMLGGGGVDGAIHRAAGPRLYDACKAVPEITPGVRCPTGEARLTPGFELPASFVVHTVGPVYENDFVSAPLLRACHQSSLGLASREGVASVAFPAISCGIYGYPASKAARIAVQSCIDFIREQDSTSPLQNIEFILFSQENFTAWVAAAEEL 199
            T VF LS  + L+I  GD+TK     +  AIVN ANE+MLGGGG DGAIHRAAGP L DAC  VPE+ PG+RCPTGEAR+TPGF+LPAS V+HTVGP+Y+ +  SA +L+  +++SL +A    +  +AFPAISCG+Y YP  +AA +++ +  +F         ++ + F+LFS E F  WV  A+EL
Sbjct:   84 TAVFPLSSSSVLKINKGDITKWFVDGSSDAIVNPANEKMLGGGGADGAIHRAAGPELVDACYKVPEVRPGIRCPTGEARITPGFKLPASHVIHTVGPIYDANRNSAAILKNAYRNSLSVAKDNNIKFIAFPAISCGVYLYPFEEAASVSISTIKEF------ADDIKEVHFVLFSDEIFNVWVKKAKEL 266          
BLAST of NO11G00950 vs. NCBI_GenBank
Match: XP_010554711.1 (PREDICTED: uncharacterized protein LOC104824360 [Tarenaya hassleriana])

HSP 1 Score: 194.5 bits (493), Expect = 3.400e-46
Identity = 99/198 (50.00%), Postives = 132/198 (66.67%), Query Frame = 0
Query:    8 VAAAATTRVFTLSDQTRLQIKVGDLTKAAV----GAIVNAANERMLGGGGVDGAIHRAAGPRLYDACKAVPEITPGVRCPTGEARLTPGFELPASFVVHTVGPVYENDFVSAPLLRACHQSSLGLASREGVASVAFPAISCGIYGYPASKAARIAVQSCIDFIREQDSTSPLQNIEFILFSQENFTAWVAAAEELTQP 202
            +A++    VF LSD + L I  GD+T+ +V     AIVN ANERMLGGGG DGAIHRAAGP+L  AC  VPE+ PG+RCPTGEAR+TPGF LPAS V+HTVGPVY++D      L   +++SL +A    +  +AFPAISCG+YGYP  +AA +A+ +   F         L+ + F+LFS E ++ W+  A+E+  P
Sbjct:   80 MASSGEGAVFKLSDSSVLNILKGDITRWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPQLRAACYEVPEVRPGIRCPTGEARITPGFNLPASHVIHTVGPVYDSDSNPKESLANAYKNSLRVAKENNIKCIAFPAISCGVYGYPFDEAASVAISTIKQF------ADDLKEVHFVLFSDEIYSVWINKAKEVLHP 271          
BLAST of NO11G00950 vs. NCBI_GenBank
Match: XP_012091148.1 (uncharacterized protein LOC105649184 isoform X1 [Jatropha curcas])

HSP 1 Score: 194.5 bits (493), Expect = 3.400e-46
Identity = 97/192 (50.52%), Postives = 130/192 (67.71%), Query Frame = 0
Query:   14 TRVFTLSDQTRLQIKVGDLTK----AAVGAIVNAANERMLGGGGVDGAIHRAAGPRLYDACKAVPEITPGVRCPTGEARLTPGFELPASFVVHTVGPVYENDFVSAPLLRACHQSSLGLASREGVASVAFPAISCGIYGYPASKAARIAVQSCIDFIREQDSTSPLQNIEFILFSQENFTAWVAAAEELTQP 202
            T VF LS  + L+I  GD+TK     +  AIVN ANERMLGGGG DGAIHRAAGP L DAC  VPE+ PG+RCPTGEAR+TPGF+LPAS V++TVGP+Y+ D   A  L+  +++SL +A    +  +AFPAISCG+YGYP  +AA +++ +  +F         L+ + F+LFS + +  W+  A+EL  P
Sbjct:   94 TTVFPLSSSSVLKINKGDITKWFVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELLDACYKVPEVQPGIRCPTGEARITPGFKLPASHVIYTVGPIYDTDSNPAASLKNAYRNSLTVAKDNNIKYIAFPAISCGVYGYPYEEAAAVSISTIKEF------KDDLKEVHFVLFSDDIYNVWLKKAKELLLP 279          
BLAST of NO11G00950 vs. NCBI_GenBank
Match: KPK16476.1 (hypothetical protein AMJ62_05185 [Myxococcales bacterium SG8_38])

HSP 1 Score: 193.4 bits (490), Expect = 7.500e-46
Identity = 98/171 (57.31%), Postives = 125/171 (73.10%), Query Frame = 0
Query:   24 RLQIKVGDLTKAAVGAIVNAANERMLGGGGVDGAIHRAAGPRLYDACKAVPEITPGVRCPTGEARLTPGFELPASFVVHTVGPVYENDFVSAPLLRACHQSSLGLASREGVASVAFPAISCGIYGYPASKAARIAVQSCIDFIREQDSTSPLQNIEFILFSQENFTAWVAA 195
            R+++  GDLT+ AV AIVNAANE++LGGGGVDGAIHRAAGP L +AC+ +PE+ PGVRCPTGEAR+TPGF L A  V+HTVGPVY      A LLR+ ++S+L LA   G+ SVAFPAISCG+YGYP  +AA I+    I  +R++D    L  + F+LFS +  +AW  A
Sbjct:    4 RIEVLRGDLTQQAVDAIVNAANEKLLGGGGVDGAIHRAAGPELLEACRKLPEVQPGVRCPTGEARITPGFGLRARHVIHTVGPVYRGRPTDAVLLRSAYRSALELAVEHGLRSVAFPAISCGVYGYPLDEAAAIS----ISVVRDRDWA--LDEVRFVLFSNDVLSAWKRA 168          
BLAST of NO11G00950 vs. NCBI_GenBank
Match: XP_001700135.1 (predicted protein, partial [Chlamydomonas reinhardtii])

HSP 1 Score: 193.0 bits (489), Expect = 9.800e-46
Identity = 94/149 (63.09%), Postives = 118/149 (79.19%), Query Frame = 0
Query:   13 TTRVFTLSDQTRLQIKVGDLTKAAVGAIVNAANERMLGGGGVDGAIHRAAGPRLYDACKAVPEITPGVRCPTGEARLTPGFELPASFVVHTVGPVYENDFVSAPLLRACHQSSLGLASREGVASVAFPAISCGIYGYPASKAARIAVQS 162
            ++R F L   T+L IK GD+T   V AIVNAANERMLGGGGVDGAIHRAAGP+L  AC  VPE+ PGVRCPTGEAR+TPGF L A  V+HTVGP+Y ND VSAPLL + ++SS+ LA+++G+AS++FP IS G++GYP  KAA++ V +
Sbjct:    2 SSRTFPLRQGTKLVIKQGDITVEDVDAIVNAANERMLGGGGVDGAIHRAAGPQLVRACAEVPEVYPGVRCPTGEARITPGFHLKARHVIHTVGPIYHNDRVSAPLLASAYRSSVELAAQQGLASLSFPGISTGVFGYPWDKAAQVRVHT 150          
BLAST of NO11G00950 vs. NCBI_GenBank
Match: AAB87596.2 (expressed protein [Arabidopsis thaliana])

HSP 1 Score: 192.2 bits (487), Expect = 1.700e-45
Identity = 99/189 (52.38%), Postives = 129/189 (68.25%), Query Frame = 0
Query:   16 VFTLSDQTRLQIKVGDLTKAAV----GAIVNAANERMLGGGGVDGAIHRAAGPRLYDACKAVPEITPGVRCPTGEARLTPGFELPASFVVHTVGPVYENDFVSAPLLRACHQSSLGLASREGVASVAFPAISCGIYGYPASKAARIAVQSCIDFIREQDSTSPLQNIEFILFSQENFTAWVAAAEELTQ 201
            VF LSD + L+I  GD+TK +V     AIVN ANERMLGGGG DGAIHRAAGP+L  AC  VPE+ PGVRCPTGEAR+TPGF LPAS V+HTVGP+Y++D      L   +++SL +A    +  +AFPAISCGIYGYP  +AA I + +   F      ++  + + F+LF+ + F+ WV  A+E+ Q
Sbjct:    9 VFNLSDSSLLKILKGDITKWSVDSSSDAIVNPANERMLGGGGADGAIHRAAGPQLRAACYEVPEVRPGVRCPTGEARITPGFNLPASRVIHTVGPIYDSDVNPQESLTNSYKNSLRVAKENNIKYIAFPAISCGIYGYPFDEAAAIGISTIKQF------STDFKEVHFVLFADDIFSVWVNKAKEVLQ 191          
BLAST of NO11G00950 vs. NCBI_GenBank
Match: NP_030605.2 (appr-1-p processing enzyme family protein [Arabidopsis thaliana] >AAN41297.1 unknown protein [Arabidopsis thaliana] >AEC09853.1 appr-1-p processing enzyme family protein [Arabidopsis thaliana] >OAP10235.1 hypothetical protein AXX17_AT2G37710 [Arabidopsis thaliana])

HSP 1 Score: 192.2 bits (487), Expect = 1.700e-45
Identity = 99/189 (52.38%), Postives = 129/189 (68.25%), Query Frame = 0
Query:   16 VFTLSDQTRLQIKVGDLTKAAV----GAIVNAANERMLGGGGVDGAIHRAAGPRLYDACKAVPEITPGVRCPTGEARLTPGFELPASFVVHTVGPVYENDFVSAPLLRACHQSSLGLASREGVASVAFPAISCGIYGYPASKAARIAVQSCIDFIREQDSTSPLQNIEFILFSQENFTAWVAAAEELTQ 201
            VF LSD + L+I  GD+TK +V     AIVN ANERMLGGGG DGAIHRAAGP+L  AC  VPE+ PGVRCPTGEAR+TPGF LPAS V+HTVGP+Y++D      L   +++SL +A    +  +AFPAISCGIYGYP  +AA I + +   F      ++  + + F+LF+ + F+ WV  A+E+ Q
Sbjct:   73 VFNLSDSSLLKILKGDITKWSVDSSSDAIVNPANERMLGGGGADGAIHRAAGPQLRAACYEVPEVRPGVRCPTGEARITPGFNLPASRVIHTVGPIYDSDVNPQESLTNSYKNSLRVAKENNIKYIAFPAISCGIYGYPFDEAAAIGISTIKQF------STDFKEVHFVLFADDIFSVWVNKAKEVLQ 255          
BLAST of NO11G00950 vs. NCBI_GenBank
Match: XP_012091151.1 (uncharacterized protein LOC105649185 isoform X1 [Jatropha curcas] >XP_020540972.1 uncharacterized protein LOC105649185 isoform X1 [Jatropha curcas] >KDP21657.1 hypothetical protein JCGZ_03328 [Jatropha curcas])

HSP 1 Score: 192.2 bits (487), Expect = 1.700e-45
Identity = 101/192 (52.60%), Postives = 128/192 (66.67%), Query Frame = 0
Query:   14 TRVFTLSDQTRLQIKVGDLTKAAV----GAIVNAANERMLGGGGVDGAIHRAAGPRLYDACKAVPEITPGVRCPTGEARLTPGFELPASFVVHTVGPVYENDFVSAPLLRACHQSSLGLASREGVASVAFPAISCGIYGYPASKAARIAVQSCIDFIREQDSTSPLQNIEFILFSQENFTAWVAAAEELTQP 202
            T VF LS  T L+I  GD+TK  V     AIVN+AN+RMLGGGG DGAIH AAGP L+DAC  VPE+ PGVRCPTGEAR+TPGF L AS V+HTVGP+Y  D   A  L++ +++SL LA    +  +AFPAISCGIYGYP  +AA I++ +  +F         L+ + F+LF  E +  W+  A+EL  P
Sbjct:  187 TAVFPLSSSTVLKINKGDITKWFVDGYSDAIVNSANQRMLGGGGADGAIHSAAGPELFDACYKVPEVQPGVRCPTGEARITPGFRLLASHVIHTVGPIYGFDVDPAASLKSAYRNSLKLARDNNIKYIAFPAISCGIYGYPHEEAAAISISTIKEF------KDDLKEVHFVLFFDEIYDVWLKKAKELLLP 372          
BLAST of NO11G00950 vs. NCBI_GenBank
Match: XP_020540973.1 (uncharacterized protein LOC105649185 isoform X2 [Jatropha curcas])

HSP 1 Score: 192.2 bits (487), Expect = 1.700e-45
Identity = 101/192 (52.60%), Postives = 128/192 (66.67%), Query Frame = 0
Query:   14 TRVFTLSDQTRLQIKVGDLTKAAV----GAIVNAANERMLGGGGVDGAIHRAAGPRLYDACKAVPEITPGVRCPTGEARLTPGFELPASFVVHTVGPVYENDFVSAPLLRACHQSSLGLASREGVASVAFPAISCGIYGYPASKAARIAVQSCIDFIREQDSTSPLQNIEFILFSQENFTAWVAAAEELTQP 202
            T VF LS  T L+I  GD+TK  V     AIVN+AN+RMLGGGG DGAIH AAGP L+DAC  VPE+ PGVRCPTGEAR+TPGF L AS V+HTVGP+Y  D   A  L++ +++SL LA    +  +AFPAISCGIYGYP  +AA I++ +  +F         L+ + F+LF  E +  W+  A+EL  P
Sbjct:   84 TAVFPLSSSTVLKINKGDITKWFVDGYSDAIVNSANQRMLGGGGADGAIHSAAGPELFDACYKVPEVQPGVRCPTGEARITPGFRLLASHVIHTVGPIYGFDVDPAASLKSAYRNSLKLARDNNIKYIAFPAISCGIYGYPHEEAAAISISTIKEF------KDDLKEVHFVLFFDEIYDVWLKKAKELLLP 269          
BLAST of NO11G00950 vs. NCBI_GenBank
Match: XP_010031090.1 (PREDICTED: uncharacterized protein LOC104420991 [Eucalyptus grandis] >KCW50356.1 hypothetical protein EUGRSUZ_J00121 [Eucalyptus grandis])

HSP 1 Score: 191.8 bits (486), Expect = 2.200e-45
Identity = 100/200 (50.00%), Postives = 133/200 (66.50%), Query Frame = 0
Query:    5 RGQVAAAATTRVFTLSDQTRLQIKVGDLTK----AAVGAIVNAANERMLGGGGVDGAIHRAAGPRLYDACKAVPEITPGVRCPTGEARLTPGFELPASFVVHTVGPVYENDFVSAPLLRACHQSSLGLASREGVASVAFPAISCGIYGYPASKAARIAVQSCIDFIREQDSTSPLQNIEFILFSQENFTAWVAAAEELTQ 201
            RG  A A     F+LS  + L I+ GD+TK     +  AI N ANERMLGGGG DGAIHRAAGP L +AC  VPE+ PG+RCPTGEAR+TPGF LPAS V+HTVGP+Y+ D      L   +++SL +A  + +  VAFPAISCG+YGYP  +AA IA+ +       ++S+  L+ + F+LFS + +  W++ A+EL Q
Sbjct:   69 RGGYAEAQKLVSFSLSPTSALVIQKGDITKWSADGSSDAIANPANERMLGGGGADGAIHRAAGPELLEACYKVPEVRPGIRCPTGEARITPGFRLPASHVIHTVGPIYDADSNPQASLTNAYRNSLTVAKEKKLQYVAFPAISCGVYGYPYDEAATIAISTI------KESSDGLKEVHFVLFSDDIYNVWLSKAKELLQ 262          
The following BLAST results are available for this feature:
BLAST of NO11G00950 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_002520862.13.400e-4651.32PREDICTED: macro domain-containing protein VPA0103... [more]
XP_010554711.13.400e-4650.00PREDICTED: uncharacterized protein LOC104824360 [T... [more]
XP_012091148.13.400e-4650.52uncharacterized protein LOC105649184 isoform X1 [J... [more]
KPK16476.17.500e-4657.31hypothetical protein AMJ62_05185 [Myxococcales bac... [more]
XP_001700135.19.800e-4663.09predicted protein, partial [Chlamydomonas reinhard... [more]
AAB87596.21.700e-4552.38expressed protein [Arabidopsis thaliana][more]
NP_030605.21.700e-4552.38appr-1-p processing enzyme family protein [Arabido... [more]
XP_012091151.11.700e-4552.60uncharacterized protein LOC105649185 isoform X1 [J... [more]
XP_020540973.11.700e-4552.60uncharacterized protein LOC105649185 isoform X2 [J... [more]
XP_010031090.12.200e-4550.00PREDICTED: uncharacterized protein LOC104420991 [E... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002178NSK002178Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G00950.1NO11G00950.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590966gene_4969Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100016g47gene5374Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G00950.1NO11G00950.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G00950 ID=NO11G00950|Name=NO11G00950|organism=Nannochloropsis oceanica|type=gene|length=800bp
ATGGTTTTCAGTCGCGGTCAGGTCGCGGCGGCAGCGACGACGCGAGTCTT
TACCTTGAGTGACCAAACACGCCTGCAGATTAAGGTGGGAGATTTGACGA
AAGCGGCCGTTGGCGCCATAGTGAACGCGGCGAACGAGCGGATGTTGGGT
GGAGGCGGGGTGGACGGGGCCATCCATCGGGCAGCAGGGCCTAGGCTTTA
CGACGCGTGCAAGGCAGTGCCCGAAATCACGCCGGGTGTTCGTTGTCCTA
CGGGGGAAGCCCGCCTCACGCCAGGCTTTGAGTTGCCGGCATCTTTCGTC
GTGCATACGGTGGGTCCGGTGTACGAGAATGACTTTGTGTCGGCCCCCTT
GCTTCGGGCCTGTCACCAGAGCTCTCTCGGATTGGCCTCGAGAGAAGGTG
TGGCATCGGTGGCTTTCCCAGCCATTTCATGTGGAATCTACGGGTATCCG
GCATCGAAAGCTGCACGCATTGCTGTCCAAAGTTGCATTGACTTCATCAG
GGAACAGgtgagctgggggaaatgaggcgggataaggcatgcgcttgaag
aatgaagagagcaggaaaaaaatctttcttttgcgaaaagcgtgtgcacg
aatcccgccagtcgaagcagtattgaataaatgaatgatcacatccatat
aaatataaccagGATTCTACATCCCCGCTTCAAAACATCGAGTTTATCCT
ATTCTCACAAGAAAATTTCACTGCCTGGGTCGCTGCCGCGGAGGAGCTCA
CCCAACCTAGCTCCCGCGGCGCAGAAACCTGTCCAACCATCGAAAGCTGA
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protein sequence of NO11G00950.1

>NO11G00950.1-protein ID=NO11G00950.1-protein|Name=NO11G00950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=215bp
MVFSRGQVAAAATTRVFTLSDQTRLQIKVGDLTKAAVGAIVNAANERMLG
GGGVDGAIHRAAGPRLYDACKAVPEITPGVRCPTGEARLTPGFELPASFV
VHTVGPVYENDFVSAPLLRACHQSSLGLASREGVASVAFPAISCGIYGYP
ASKAARIAVQSCIDFIREQDSTSPLQNIEFILFSQENFTAWVAAAEELTQ
PSSRGAETCPTIES*
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Synonyms
Publications