NO11G00950.1, NO11G00950.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G00950.1
Unique NameNO11G00950.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length645
Alignment locationchr11:364059..364858 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:364059..364858 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G00950.1 vs.
Match: XP_005856302.1 (hypothetical protein NGA_2111400, partial [Nannochloropsis gaditana CCMP526]; EKU20082.1 hypothetical protein NGA_2111400, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 281.2 bits (718), Expect = 2.700e-72
Identity = 138/199 (69.35%), Postives = 166/199 (83.42%), Query Frame = 0 
Query:    6 GQVAAAATTRVFTLSDQTRLQIKVGDLTKAAVGAIVNAANERMLGGGGVDGAIHRAAGPRLYDACKAVPEITPGVRCPTGEARLTPGFELPASFVVHTVGPVYENDFVSAPLLRACHQSSLGLASREGVASVAFPAISCGIYGYPASKAARIAVQSCIDFIREQDSTSPLQNIEFILFSQENFTAWVAAAEELTQPSSR 205
            G+ AA+   R F LS++  LQI VGDLTK +V AIVNAANERMLGGGGVDGA+HRAAGP+LY+AC+AVPE+ PGVRCPTGEAR+TPGF+LPA +VVHTVGP+Y+ND  SA LLRA H SSL LA ++G+ SVAFPA+SCGIYGYP S+A+ IAV+SCIDF  EQ   SPL+NIEF+LFSQ+ + AWVAAAE+L   S+R
Sbjct:   41 GKAAASILRRSFPLSNRISLQISVGDLTKCSVDAIVNAANERMLGGGGVDGAVHRAAGPQLYEACRAVPEVRPGVRCPTGEARITPGFKLPARYVVHTVGPIYKNDNESAALLRASHLSSLDLAVKQGLTSVAFPAVSCGIYGYPVSRASHIAVKSCIDFGDEQGLNSPLRNIEFVLFSQDIYNAWVAAAEDLVHRSTR 239
The following BLAST results are available for this feature:
BLAST of NO11G00950.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005856302.12.700e-7269.35hypothetical protein NGA_2111400, partial [Nannoch... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G00950NO11G00950Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G00950.1NO11G00950.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G00950.1.cds1NO11G00950.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G00950.1.cds2NO11G00950.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G00950.1 ID=NO11G00950.1|Name=NO11G00950.1|organism=Nannochloropsis oceanica|type=mRNA|length=645bp
ATGGTTTTCAGTCGCGGTCAGGTCGCGGCGGCAGCGACGACGCGAGTCTT
TACCTTGAGTGACCAAACACGCCTGCAGATTAAGGTGGGAGATTTGACGA
AAGCGGCCGTTGGCGCCATAGTGAACGCGGCGAACGAGCGGATGTTGGGT
GGAGGCGGGGTGGACGGGGCCATCCATCGGGCAGCAGGGCCTAGGCTTTA
CGACGCGTGCAAGGCAGTGCCCGAAATCACGCCGGGTGTTCGTTGTCCTA
CGGGGGAAGCCCGCCTCACGCCAGGCTTTGAGTTGCCGGCATCTTTCGTC
GTGCATACGGTGGGTCCGGTGTACGAGAATGACTTTGTGTCGGCCCCCTT
GCTTCGGGCCTGTCACCAGAGCTCTCTCGGATTGGCCTCGAGAGAAGGTG
TGGCATCGGTGGCTTTCCCAGCCATTTCATGTGGAATCTACGGGTATCCG
GCATCGAAAGCTGCACGCATTGCTGTCCAAAGTTGCATTGACTTCATCAG
GGAACAGGATTCTACATCCCCGCTTCAAAACATCGAGTTTATCCTATTCT
CACAAGAAAATTTCACTGCCTGGGTCGCTGCCGCGGAGGAGCTCACCCAA
CCTAGCTCCCGCGGCGCAGAAACCTGTCCAACCATCGAAAGCTGA
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protein sequence of NO11G00950.1

>NO11G00950.1-protein ID=NO11G00950.1-protein|Name=NO11G00950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=215bp
MVFSRGQVAAAATTRVFTLSDQTRLQIKVGDLTKAAVGAIVNAANERMLG
GGGVDGAIHRAAGPRLYDACKAVPEITPGVRCPTGEARLTPGFELPASFV
VHTVGPVYENDFVSAPLLRACHQSSLGLASREGVASVAFPAISCGIYGYP
ASKAARIAVQSCIDFIREQDSTSPLQNIEFILFSQENFTAWVAAAEELTQ
PSSRGAETCPTIES*
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mRNA from alignment at chr11:364059..364858+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G00950.1 ID=NO11G00950.1|Name=NO11G00950.1|organism=Nannochloropsis oceanica|type=mRNA|length=800bp|location=Sequence derived from alignment at chr11:364059..364858+ (Nannochloropsis oceanica)
ATGGTTTTCAGTCGCGGTCAGGTCGCGGCGGCAGCGACGACGCGAGTCTT
TACCTTGAGTGACCAAACACGCCTGCAGATTAAGGTGGGAGATTTGACGA
AAGCGGCCGTTGGCGCCATAGTGAACGCGGCGAACGAGCGGATGTTGGGT
GGAGGCGGGGTGGACGGGGCCATCCATCGGGCAGCAGGGCCTAGGCTTTA
CGACGCGTGCAAGGCAGTGCCCGAAATCACGCCGGGTGTTCGTTGTCCTA
CGGGGGAAGCCCGCCTCACGCCAGGCTTTGAGTTGCCGGCATCTTTCGTC
GTGCATACGGTGGGTCCGGTGTACGAGAATGACTTTGTGTCGGCCCCCTT
GCTTCGGGCCTGTCACCAGAGCTCTCTCGGATTGGCCTCGAGAGAAGGTG
TGGCATCGGTGGCTTTCCCAGCCATTTCATGTGGAATCTACGGGTATCCG
GCATCGAAAGCTGCACGCATTGCTGTCCAAAGTTGCATTGACTTCATCAG
GGAACAGGTGAGCTGGGGGAAATGAGGCGGGATAAGGCATGCGCTTGAAG
AATGAAGAGAGCAGGAAAAAAATCTTTCTTTTGCGAAAAGCGTGTGCACG
AATCCCGCCAGTCGAAGCAGTATTGAATAAATGAATGATCACATCCATAT
AAATATAACCAGGATTCTACATCCCCGCTTCAAAACATCGAGTTTATCCT
ATTCTCACAAGAAAATTTCACTGCCTGGGTCGCTGCCGCGGAGGAGCTCA
CCCAACCTAGCTCCCGCGGCGCAGAAACCTGTCCAACCATCGAAAGCTGA
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Coding sequence (CDS) from alignment at chr11:364059..364858+

>NO11G00950.1 ID=NO11G00950.1|Name=NO11G00950.1|organism=Nannochloropsis oceanica|type=CDS|length=645bp|location=Sequence derived from alignment at chr11:364059..364858+ (Nannochloropsis oceanica)
ATGGTTTTCAGTCGCGGTCAGGTCGCGGCGGCAGCGACGACGCGAGTCTT
TACCTTGAGTGACCAAACACGCCTGCAGATTAAGGTGGGAGATTTGACGA
AAGCGGCCGTTGGCGCCATAGTGAACGCGGCGAACGAGCGGATGTTGGGT
GGAGGCGGGGTGGACGGGGCCATCCATCGGGCAGCAGGGCCTAGGCTTTA
CGACGCGTGCAAGGCAGTGCCCGAAATCACGCCGGGTGTTCGTTGTCCTA
CGGGGGAAGCCCGCCTCACGCCAGGCTTTGAGTTGCCGGCATCTTTCGTC
GTGCATACGGTGGGTCCGGTGTACGAGAATGACTTTGTGTCGGCCCCCTT
GCTTCGGGCCTGTCACCAGAGCTCTCTCGGATTGGCCTCGAGAGAAGGTG
TGGCATCGGTGGCTTTCCCAGCCATTTCATGTGGAATCTACGGGTATCCG
GCATCGAAAGCTGCACGCATTGCTGTCCAAAGTTGCATTGACTTCATCAG
GGAACAGGATTCTACATCCCCGCTTCAAAACATCGAGTTTATCCTATTCT
CACAAGAAAATTTCACTGCCTGGGTCGCTGCCGCGGAGGAGCTCACCCAA
CCTAGCTCCCGCGGCGCAGAAACCTGTCCAACCATCGAAAGCTGA
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Synonyms
Publications