NO11G00680, NO11G00680 (gene) Nannochloropsis oceanica

Overview
NameNO11G00680
Unique NameNO11G00680
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2524
Alignment locationchr11:286635..289158 -

Link to JBrowse

Properties
Property NameValue
DescriptionLipase family protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:286635..289158 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006629lipid metabolic process
GO:0006629lipid metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR029058AB_hydrolase
IPR002921Fungal_lipase-like
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Homology
BLAST of NO11G00680 vs. NCBI_GenBank
Match: EWM25157.1 (lipase family protein [Nannochloropsis gaditana])

HSP 1 Score: 356.7 bits (914), Expect = 7.700e-95
Identity = 162/239 (67.78%), Postives = 190/239 (79.50%), Query Frame = 0
Query:   54 YDENIAKTLADYCAAAYSCGSFQGCGNWSCKSCQLHPNAESLRFSGGTNGTGVGRGSVSGMVIHDPDLNKVILAFAGTQVTDLIVWANNLNGELIDYPACGGNGCQVHAGFYADYQAIAPSLKESLGYVLARYPQSGLWIAGHSLGGALAMLAVADLKGNHSIHAEAVYTFGQPRVGNQAFAMHLYDITGRAQPPHAPTPYFRLVHYQDPIPHAPPVLLGFWHAPTEIFYTEDQTSYQV 293
            YDE +AK +A+YCAAAYSCGS +GCGNWSC SCQLH +AE+ RFSGG NGTG     VSG+V+HD D+NK+IL FAGTQ  DL  WANNLNGEL  Y  C   GCQVH GFYADYQA+AP+  E L Y LAR+P++ LW+ GHSLGGALAMLAVADLKGNH++  EA+YT+GQPRVGNQAFAM+   +T R     APT Y+R+VH QDPIPH PP+LLGFWHAPTE+FY E+QT Y+V
Sbjct:   53 YDEVVAKVMAEYCAAAYSCGSLEGCGNWSCNSCQLHSHAEAFRFSGGVNGTG-----VSGLVVHDSDINKIILVFAGTQAGDLAAWANNLNGELTGYTPCADAGCQVHTGFYADYQALAPAFLEPLSYALARFPRASLWVTGHSLGGALAMLAVADLKGNHAVRIEALYTYGQPRVGNQAFAMNFIGLTRRQD---APTSYYRVVHAQDPIPHVPPILLGFWHAPTEVFYNEEQTKYEV 283          
BLAST of NO11G00680 vs. NCBI_GenBank
Match: EWM26431.1 (lipase [Nannochloropsis gaditana])

HSP 1 Score: 226.9 bits (577), Expect = 9.200e-56
Identity = 115/270 (42.59%), Postives = 156/270 (57.78%), Query Frame = 0
Query:   53 MYDENIAKTLADYCAAAYSCGSFQGCGNWSCKSCQLHPNAESLRFSGGTNGTGVGRGSVSGMVIHDPDLNKVILAFAGTQVTDLIVWANNLNGELIDYPACGGNGCQVHAGFYADYQAIAPSLKESLGYVLARYPQSGLWIAGHSLGGALAMLAVADLKGNHSIHAEAVYTFGQPRVGNQAFAMHLYDITGRAQPPHAPTPYFRLVHYQDPIPHAPPVLLGFWHAPTEIFYTEDQTSYQVCNDSGEDFYCSNSFLFAYRVEDHLNYLGVP 323
            +Y+    +T+ DY  A+YSC +   C  W+C +C  HP+ E  R S       VG  SV G          +++AFAGT + D++ W  NL+ +  D+P  G  GCQVH GFY  Y  +   ++E + Y L ++P + +W+ GHSLG A+A+  + DL  + S +   V  FGQPRVGN+ FA  +  +           P +RLVH++DP+PH PP   GF H P E+FY EDQTSY VCNDSGED  CS+ FL    V DHLNYLGVP
Sbjct:  323 LYNITAVRTILDYAEASYSCKT-SACEAWNCSTCSRHPDTEVRRISAPDGDGFVGYNSVEG---------ALVVAFAGTSMDDIVEWMANLDFKKEDFPHDGCEGCQVHTGFYTAYLELRSQVREFVQYFLQQHPDAPIWVTGHSLGAAIAVHCMVDLM-SLSYNVRRVVNFGQPRVGNKQFATFVASLA-----ESLDFPLYRLVHHRDPVPHLPPRAFGFHHQPFEVFYNEDQTSYIVCNDSGEDLQCSDQFLVDLDVADHLNYLGVP 576          
BLAST of NO11G00680 vs. NCBI_GenBank
Match: EWM30033.1 (lipase family protein [Nannochloropsis gaditana])

HSP 1 Score: 207.6 bits (527), Expect = 5.800e-50
Identity = 108/274 (39.42%), Postives = 159/274 (58.03%), Query Frame = 0
Query:   51 TTMYDENIAKTLADYCAAAYSCGSFQGCGNWSCKSCQLHPNAESLR-FSGGTNGTGVGRGSVSGMVIHDPDLNKVILAFAGTQVTDLIVWANNLNGELIDYPACGGNGCQVHAGFYADYQAIAPSLKESLGYVLARYPQSGLWIAGHSLGGALAMLAVADLKGNHSIHAEAVYTFGQPRVGNQAFAMHLYDITGRAQPPHAPTPYFRLVHYQDPIPHAPPVLLGFWHAPTEIFYTEDQTSYQVCNDSGEDFYCSNSFLFAYRVEDHLNYLGVPF 324
            ++ Y+E   + + DY AAAY C +   C  W+C +C  HP  E  R +    NG        +G V  DP    V+++FAGT  T +  W ++L+     +P  G   C+VHAGF   Y A+ P L+  +  ++  +PQ+ +W+ GHSLG ALA+L + DL  + S    AV  FGQPRVGNQ F+  +      AQ       ++RLVH++DP+PH PP   GF H+P E+FYT+++T Y +C+ +GED +CS+ +L    ++DHLNYLGV F
Sbjct:   64 SSFYNETAVRVMLDYAAAAYYCRT-SACEAWACSACSRHPRTEVRRVYDNVHNG--------NGFVGWDPVEGVVVVSFAGTDTTSVANWIDDLDEVKTPWPLEGCQECKVHAGFLTTYSALRPQLQPLVEALVRDHPQAPVWVTGHSLGAALAVLCMVDLL-SLSYPVRAVVNFGQPRVGNQHFSSFV-----AAQSASLSLCFYRLVHHRDPVPHLPPASFGFHHSPFEVFYTKNETYYHICDATGEDKHCSDHYLIDPSIKDHLNYLGVLF 322          
BLAST of NO11G00680 vs. NCBI_GenBank
Match: CBN76735.1 (lipase [Ectocarpus siliculosus])

HSP 1 Score: 159.5 bits (402), Expect = 1.800e-35
Identity = 109/314 (34.71%), Postives = 149/314 (47.45%), Query Frame = 0
Query:   54 YDENIAKTLADYCAAAYSCGSFQGCGNWSCKSCQLHP--------NAE-----------------SLRFSGGTNGTGV-GRGSVSGMVIHDPDLN--------KVILAFAGTQVTDLIVWANNLNGELIDYPACG-GNGCQVHAGFYADYQAIAPSLKESLGYVLARYPQSGLWIAGHSLGGALAMLAVADLK--------GNHSIHAEAVYTFGQPRVGNQAFAMHLYDITGRAQPPHAPTPYFRLVHYQDPIPHAPPVLLGFWHAPTEIFYTEDQTSYQVCNDSGEDFYCSNSFLFAY-RVEDHLNYLGVPF 324
            YDE +A  +     AAY         +WSCK+CQ  P        N E                 S R++  T G G   R  +      D D          ++++ F+GT  + +  W ++L    +     G    CQVH GF A Y  +   ++ ++G  +   P   + I GHSLG ALA+L   DL+         N S+    +Y FG PRVGN+AFA     +T R          FRLVH++DP+PH P    G+ H PTE+FYTEDQ+SYQVCN+SGED  CSN F   +  +EDHL YL V +
Sbjct:   52 YDEGLASVIVRLTEAAYCTPQL---ASWSCKACQHFPGMRNVTVINGEKRNVRGFVGVDIGDAEPSNRYTSTTRGPGPDDRRHLRAAEGDDRDAGGAAQSGKARIVITFSGTDPSSVKNWIDDLEATTVPNTYGGLCEQCQVHRGFLAAYDLVKDQVRYAIGQHMQYNPHVQILITGHSLGAALAVLCFLDLRVNRGLGQGPNSSVSFAPIYLFGSPRVGNEAFA----TLTTR-----PGVSIFRLVHHRDPVPHLPLEAWGYHHPPTEVFYTEDQSSYQVCNNSGEDDKCSNQFWAIFGNIEDHLWYLVVNY 353          
BLAST of NO11G00680 vs. NCBI_GenBank
Match: XP_001017211.1 (lipase family protein [Tetrahymena thermophila SB210] >EAR96966.1 lipase family protein (macronuclear) [Tetrahymena thermophila SB210])

HSP 1 Score: 154.1 bits (388), Expect = 7.600e-34
Identity = 98/269 (36.43%), Postives = 147/269 (54.65%), Query Frame = 0
Query:   54 YDENIAKTLADYCAAAYSCGSFQGCGNWSC-KSCQLHPNAESLR-FSGGTNGTGVGRGSVSGMVIHDPDLNKVILAFAGTQVTDLIVWANNLNGELIDYPACGGNGCQVHAGFYADYQAIAPSLKESLGYVLARYPQSGLWIAGHSLGGALAMLAVADLKGNHSIHAEAVYTFGQPRVGNQAFAMHLYDITGRAQPPHAPTPYFRLVHYQDPIPHAPPVLLGFWHAPTEIFYTEDQTSYQVCNDSGEDFYCSNSFLFAYRVEDHLNYLG 321
            YDE  A   + Y A A  C S Q   NWSC  +CQ++P    ++ F   T+        + G   +D + N +I AF  T VTDL     +L+   I Y +C  NGC+VH GF   ++ +   +  S+  +   YP + + + GHSLGGALA+LA  D+  N   H + +YTFGQPRVGN+ FA +  +  G           +RL+H +D IPH P  ++GF+H  TE++Y E  TSY+VC+   ++  CS+  L ++ ++DH  Y+G
Sbjct:   32 YDEEFAYEASGY-AQASRC-SLQNIQNWSCGTACQINPGVTDIKAFYNSTH-------QIQGYTAYDQNKNMIIAAFRPT-VTDLNTLI-DLDYFQIKYASC--NGCEVHRGFLLAWKDLQNQVLTSISELANTYPNAKVGVFGHSLGGALAVLASIDI-NNDVKHVDYLYTFGQPRVGNKKFAKYFNERIGN---------IYRLIHNRDLIPHVPLRVMGFYHEGTEVWYDEPNTSYEVCDFEKDNNKCSDK-LHSFTMKDHCYYMG 276          
BLAST of NO11G00680 vs. NCBI_GenBank
Match: XP_001467571.1 (putative lipase [Leishmania infantum JPCM5] >CAM70631.1 putative lipase [Leishmania infantum JPCM5] >SOX67954.1 lipase-putative [Leishmania infantum])

HSP 1 Score: 149.8 bits (377), Expect = 1.400e-32
Identity = 96/266 (36.09%), Postives = 135/266 (50.75%), Query Frame = 0
Query:   80 NWSCKSCQLHPNAESLRFSGGTNGTGVGRGSVSGMVIHDPDLNKVILAFAGTQVTDLIVWANNLNGELIDYPACG-GNGCQVHAGFYADYQAIAPSLKESLGYVLARYPQSGLWIAGHSLGGALAMLAVADLKGNHSIHAEA---------------------VYTFGQPRVGNQAFAMHLYDITGRAQPPHAPTPYFRLVHYQDPIPHAPPVLLGFWHAPTEIFYTEDQTSYQVCNDSG--EDFYCSNSFLFAYRVEDHLNYLGV 322
            +WSC +   +   +   F+   N T  G    SG+   D D  ++++AF GT  T  + W  NL+  L  YP  G G GC++H GFY+ Y ++   + E +  + ARYP   L+I GHSLGGA+AMLA  +L   + + A+                      +YTFG+PRVGN  F+     I  R +        FRL H +DP+PH PP    + H P E++Y  D   Y +C  +G  ED  CSNS +F  RV DHL YLG+
Sbjct:   72 HWSCGNTCSNATPDFHVFNIYEN-TSTGNVGYSGV---DHDAERIVVAFRGTYNT--VNWLQNLDFWLTPYPHPGCGKGCKIHRGFYSAYSSLRTQMIEDVLLLHARYPFYTLFITGHSLGGAMAMLAAVELTTWNMLEADVLGKDVQSRGAVSPPLHLAPVELYTFGEPRVGNGYFSNWSLSILTRKRS-------FRLTHARDPVPHVPPRTFSYVHMPREVWYPTDGEKYHLCRGTGFSEDPLCSNS-VFGTRVSDHLIYLGI 323          
BLAST of NO11G00680 vs. NCBI_GenBank
Match: XP_003863341.1 (lipase, putative [Leishmania donovani] >CBZ36652.1 lipase, putative [Leishmania donovani])

HSP 1 Score: 148.7 bits (374), Expect = 3.200e-32
Identity = 95/266 (35.71%), Postives = 135/266 (50.75%), Query Frame = 0
Query:   80 NWSCKSCQLHPNAESLRFSGGTNGTGVGRGSVSGMVIHDPDLNKVILAFAGTQVTDLIVWANNLNGELIDYPACG-GNGCQVHAGFYADYQAIAPSLKESLGYVLARYPQSGLWIAGHSLGGALAMLAVADLKGNHSIHAEA---------------------VYTFGQPRVGNQAFAMHLYDITGRAQPPHAPTPYFRLVHYQDPIPHAPPVLLGFWHAPTEIFYTEDQTSYQVCNDSG--EDFYCSNSFLFAYRVEDHLNYLGV 322
            +WSC +   +   +   F+   N T  G    SG+   D D  ++++AF GT  T  + W  NL+  L  YP  G G GC++H GFY+ Y ++   + E +  + ARYP   L+I GHSLGGA+AMLA  +L   + + A+                      +YTFG+PRVGN  F+     +  R +        FRL H +DP+PH PP    + H P E++Y  D   Y +C  +G  ED  CSNS +F  RV DHL YLG+
Sbjct:   72 HWSCGNTCSNATPDFHVFNIYEN-TSTGNVGYSGV---DHDAERIVVAFRGTYNT--VNWLQNLDFWLTPYPHPGCGKGCKIHRGFYSAYSSLRTQMIEDVLLLHARYPFYTLFITGHSLGGAMAMLAAVELTTWNMLEADVLGKDVQSRGAVSPPLHLAPVELYTFGEPRVGNGYFSNWSLSVLTRKRS-------FRLTHARDPVPHVPPRTFTYVHMPREVWYPTDGEKYHLCRGTGFSEDPLCSNS-VFGTRVSDHLIYLGI 323          
BLAST of NO11G00680 vs. NCBI_GenBank
Match: XP_001685233.1 (putative lipase [Leishmania major strain Friedlin] >CAJ08439.1 putative lipase [Leishmania major strain Friedlin])

HSP 1 Score: 147.1 bits (370), Expect = 9.300e-32
Identity = 96/266 (36.09%), Postives = 134/266 (50.38%), Query Frame = 0
Query:   80 NWSCKSCQLHPNAESLRFSGGTNGTGVGRGSVSGMVIHDPDLNKVILAFAGTQVTDLIVWANNLNGELIDYPACG-GNGCQVHAGFYADYQAIAPSLKESLGYVLARYPQSGLWIAGHSLGGALAMLAVADL------------KGNHSIHAEA---------VYTFGQPRVGNQAFAMHLYDITGRAQPPHAPTPYFRLVHYQDPIPHAPPVLLGFWHAPTEIFYTEDQTSYQVCNDSG--EDFYCSNSFLFAYRVEDHLNYLGV 322
            +W C     +   E   F+   N +  G    SG+   D D  ++++AF GT  T  + W  NL+  L  YP  G GNGC++H GFY  Y ++   + + +  + ARYP   L+I GHSLGGA+AMLA  +L            KG  S  A +         +YTFG+PRVGN  F+     +  R +        FRL H +DP+PH PP L  + H P E++Y  D   Y +C  +G  ED  CS+S L   +V DHL YLG+
Sbjct:   70 HWGCGVTCANATPEFQVFNIYENNS-TGNVGYSGV---DHDAKRIVVAFRGTYNT--VNWLQNLDFRLTSYPHPGCGNGCKIHRGFYKAYSSLRAQMIDDVLLLHARYPLYTLFITGHSLGGAMAMLAAVELATWNMLEGDVLGKGVQSRSAASPPLHLAPVELYTFGEPRVGNGYFSNWSLSVLTRKRS-------FRLTHAKDPVPHVPPRLFTYVHTPQEVWYPTDDEKYHLCQGTGTSEDPLCSDSVL-GTKVSDHLIYLGI 321          
BLAST of NO11G00680 vs. NCBI_GenBank
Match: XP_003877766.1 (putative lipase [Leishmania mexicana MHOM/GT/2001/U1103] >CBZ29304.1 putative lipase [Leishmania mexicana MHOM/GT/2001/U1103])

HSP 1 Score: 146.4 bits (368), Expect = 1.600e-31
Identity = 97/266 (36.47%), Postives = 132/266 (49.62%), Query Frame = 0
Query:   80 NWSCKSCQLHPNAESLRFSGGTNGTGVGRGSVSGMVIHDPDLNKVILAFAGTQVTDLIVWANNLNGELIDYPACGGNGCQVHAGFYADYQAIAPSLKESLGYVLARYPQSGLWIAGHSLGGALAMLAVADLKGNHSIHAE---------------------AVYTFGQPRVGNQAFA-MHLYDITGRAQPPHAPTPYFRLVHYQDPIPHAPPVLLGFWHAPTEIFYTEDQTSYQVCNDS--GEDFYCSNSFLFAYRVEDHLNYLGV 322
            +WSC     +   E   F+   N T  G    SG+   D    ++++AF GT  T    W  NL+   + YP      C+VH GFY  Y ++   + + +  + ARYP   L++ GHSLGGA+AMLA  DL       AE                      +YTFG+PRVGN  F+   L  +TGR          FRL H +DP+PH PP  L + H P E++Y +D   + +C D+   ED YCSNS +FA +V DHL YLGV
Sbjct:   72 HWSCGDTCTNATPEFRLFNVYDN-TSTGNFGYSGV---DHVAKRIVVAFRGTYNT--ANWLQNLDFIFMTYPHPDCGKCKVHRGFYTAYASLRTQMIQDVLLLHARYPLYTLFVTGHSLGGAIAMLAAVDLTTWDMSEAEVLGKGVLSRGVVSPPLHLTPITLYTFGEPRVGNGHFSNWSLSVLTGRQT--------FRLTHAKDPVPHVPPRTLSYVHMPREVWYPKDDKKHYLCRDNAFSEDPYCSNS-VFATQVPDHLMYLGV 322          
BLAST of NO11G00680 vs. NCBI_GenBank
Match: KRW99527.1 (hypothetical protein PPERSA_03997 [Pseudocohnilembus persalinus])

HSP 1 Score: 144.8 bits (364), Expect = 4.600e-31
Identity = 91/275 (33.09%), Postives = 142/275 (51.64%), Query Frame = 0
Query:   54 YDENIAKTLADYCAAAYSCGSFQGCGNWSCKSCQLHPNAESLRFSGGTNGTGVGRGSVSGMVIH---DPDLNKVILAFAGTQVTDLIVWANNLNGELIDYPACGGNGCQVHAGFYADYQAIAPSLKESLGYVLARYPQSGLWIAGHSLGGALAMLAVADLKGNHSIHAEAVYTFGQPRVGNQAFAMHLYDITGRAQPPHAPTPYFRLVHYQDPIPHAPPVLLGFWHAPTEIFY--TEDQTSYQVCNDSG--EDFYCSNSFLFAYRVEDHLNYLGV 322
            Y    +K++  Y  A+Y C + Q   NW+ ++C  HP+   ++         V +    G  ++   D D N +++AF G+Q  ++  W +NL+ +  +Y  C  N C VH GFY  +QA++  +  +   + + +  +  ++ GHSLGGA+A L   +L+       +  Y FG PRVGNQ FA +     G  Q P+       +VHY+DP+PH P  + GF   PTE +Y    D  +Y+ C  +G  E+  CSN  L A  + DHLNYLGV
Sbjct:   22 YSPQTSKSMLYYAKASY-CEADQ-IKNWNGQACDFHPSMTDIK---------VVKNLAHGSQLYLGFDADANAIVIAFRGSQ--NIQNWIDNLDYKKTEYDFC--NDCMVHKGFYKAWQAVSDEVMSTYRSLKSSHSGAKTYVTGHSLGGAIATLCALELR-QAGFQVDNFYVFGCPRVGNQQFAEY-----GAQQLPYE----VEVVHYKDPVPHVPLSVQGFVRIPTETYYYSKTDVNAYKWCPSAGGEENSKCSNKLLLATNIGDHLNYLGV 271          
The following BLAST results are available for this feature:
BLAST of NO11G00680 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25157.17.700e-9567.78lipase family protein [Nannochloropsis gaditana][more]
EWM26431.19.200e-5642.59lipase [Nannochloropsis gaditana][more]
EWM30033.15.800e-5039.42lipase family protein [Nannochloropsis gaditana][more]
CBN76735.11.800e-3534.71lipase [Ectocarpus siliculosus][more]
XP_001017211.17.600e-3436.43lipase family protein [Tetrahymena thermophila SB2... [more]
XP_001467571.11.400e-3236.09putative lipase [Leishmania infantum JPCM5] >CAM70... [more]
XP_003863341.13.200e-3235.71lipase, putative [Leishmania donovani] >CBZ36652.1... [more]
XP_001685233.19.300e-3236.09putative lipase [Leishmania major strain Friedlin]... [more]
XP_003877766.11.600e-3136.47putative lipase [Leishmania mexicana MHOM/GT/2001/... [more]
KRW99527.14.600e-3133.09hypothetical protein PPERSA_03997 [Pseudocohnilemb... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002203NSK002203Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G00680.1NO11G00680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590867gene_4936Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100016g73gene5349Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G00680.1NO11G00680.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G00680 ID=NO11G00680|Name=NO11G00680|organism=Nannochloropsis oceanica|type=gene|length=2524bp
ATAATACAGCTTCAAAACGCATCTATTTTTGGGTGTTACGGTTATAGAAG
TTCAGACCGACGACCAAGCAAAGTAACAAACTCATGTGTCTACAGGTGTG
AAATGCAAGCACTCACGCAGAAAACAAACAAGGCGCTGGTTGGCGTGCGG
TCTCTGATAAAGCAGCGGTTTCCTTGAAAAAGACACAACACGCAAAACCG
CGAGTCGGCACGAGTTGTTGTGCTTCTTCGGTGGCATTCACACCAAACTA
CACACAACGCATCCAAAAAGACAGATATGCCGCCGCTACCAGGTAGCTGC
GGCCACCTTGTCCCCGTCCTCTTTCTCCTGCTGTCCGTGACGGTCGCTGT
TGTCGCAGTGCCCGCCCGCACTCGGCCCCTTCAACCTCCCCCTCCTCCCA
CGAACACGCCCACTGCTGCCAATCCCACAACGATGTACGATGAAAACATA
GCCAAGACCCTGGCGGATTATTGTGCCGCCGCCTATTCTTGCGGATCCTT
CCAAGGGTGTGGGAACTGGAGCTGCAAGTCGTGTCAGgcaaggcgatgga
agggacgggaagggggaaagaagggaaagagagggcaaattgtgcagaaa
gaatgggtgtttaagagggtaaggaggaagcggggggaaaggaacgatga
ctagctaaacctcctgtgttttccttctttcttagCTCCACCCGAACGCT
GAATCGTTGCGTTTCTCGGGCGGGACTAACGGCACAGGCGTCGGCAGGGG
CAGCGTTAGCGGCATGGTTATCCACGACCCAGACTTGAACAAGGTCATTT
TGGCATTTGCGGGAACACAAGTAACGGATTTGATTGTGTGGGCAAATAAT
CTGAATGGTGAATTGATTGATTACCCGGCTTGTGGGGGAAATGGCTGCCA
AGTACACGCAGGGTTTTATGCCGATTATCAGgtaaggtgtcacggagggt
tgggaagggcgctggatgggacagctaggtacgcaggaagttctcttttt
tagttttaaagaaatcctgtgctagtgtgtatatattggcttactcgcgg
cttatttttccaatcatgactccacgttcctaatatcctcctctttcacc
ccctccagGCGATTGCCCCCTCCCTGAAGGAATCTCTCGGCTACGTCCTC
GCCCGCTACCCGCAATCGGGTCTATGGATAGCGGGGCATTCCCTGGGGGG
AGCTCTGGCGATGCTGGCTGTGGCGGATCTGAAGGGAAACCACTCGATAC
ATGCCGAGGCCGTATACACGTTCGgtacgtcgtcattatcgtcgtcagtt
atattgccatctccttatcttcaccacgcttcgtgtctctatctctcgct
tcattgttcacctttcggcttttactcacactccctccctccttccctcc
gcccctcgctccttcagGCCAGCCCCGCGTGGGCAACCAAGCTTTCGCCA
TGCATCTCTACGATATCACGGGTCGTGCCCAGCCACCCCATGCCCCCACC
CCTTACTTCCGCCTTGTCCACTACCAAGACCCTATCCCCCACGCTCCGCC
TGTTCTTTTGGGGTTCTGGCACGCGCCGACTGAAATTTTTTATACTGAAG
ATCAGACGAGCTATCAGgtggggagggagggggggagggaagggtaaggc
agcaggtgttttctaggctcgcactcttaatacctttgaaaacgagctca
agaaagtagcaaagatgtcattaagtcacaagtaatcttctctctgatat
ctctgaggctcgattgtctccatcggctcacatccgctcccttaattccc
cccttccctctctcttagGTCTGCAACGATTCAGGTGAGGACTTTTACTG
CTCCAACTCTTTCTTGTTCGCTTACCGAGTAGAAGATCATCTAAATTACC
TCGGAGTTCCTTTTTAGTGGGGAAGACAGGGATGAGGTGGAGAGGGATGG
ATGGCGAGTGAAGGGCCACACTGAAATCACTTCAGTGTACCGTTGTAGAG
AAGGAAGGAGGGAGGGGCTGTCAGAAATAGCATGAAGAAAGGGAGGGAGG
GATGGAGGGGGGTGTATACTTTGCATGTCAGTAGATTTGGTGGGGTTGGA
GGTCGCACGTGAGGGTGTATAGATAGGCCGAGGGCGCGAGGAAAGGAGAC
GAAGAGGAAGTCAGGAGACTCAGACAGGGACAGAAAAGGCAGCAGCAGCA
ACAGCAGCAGTTGTGTTAGTAGGAGTATCACCAAACAGGTGATGAAAGAA
GAGGGGCAGGAATGTGTGGGTCACACGATTTGTGTAGAGATGGTGCGGCG
GGGATGGTCGGGGAGGAAATGAGGTTGCCATGGACTCACCGGAAGGACGA
ACCTCGGGCACTACGACGGGCGGGGATGGGACGGAGAGCTTCGAACTTTT
TTAACACGTGCAAGGTACGCCCCACTCGCTGGACGTGAAGCATTAAAAGA
TGGGTGGCAAGTCCAGTAGTTCAAAGATTGGTTTTGAGGCGGAAAGCAAA
TTTCACCACACTCGTTTACTGTGC
back to top

protein sequence of NO11G00680.1

>NO11G00680.1-protein ID=NO11G00680.1-protein|Name=NO11G00680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=324bp
MPPLPGSCGHLVPVLFLLLSVTVAVVAVPARTRPLQPPPPPTNTPTAANP
TTMYDENIAKTLADYCAAAYSCGSFQGCGNWSCKSCQLHPNAESLRFSGG
TNGTGVGRGSVSGMVIHDPDLNKVILAFAGTQVTDLIVWANNLNGELIDY
PACGGNGCQVHAGFYADYQAIAPSLKESLGYVLARYPQSGLWIAGHSLGG
ALAMLAVADLKGNHSIHAEAVYTFGQPRVGNQAFAMHLYDITGRAQPPHA
PTPYFRLVHYQDPIPHAPPVLLGFWHAPTEIFYTEDQTSYQVCNDSGEDF
YCSNSFLFAYRVEDHLNYLGVPF*
back to top
Synonyms
Publications