NO11G00680.1, NO11G00680.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO11G00680.1
Unique Name	NO11G00680.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1855
Alignment location	chr11:286635..289158 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr11	genome	chr11:286635..289158 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO11G00680.1 vs.
Match: EWM25157.1 (lipase family protein [Nannochloropsis gaditana])

HSP 1 Score: 363.6 bits (932), Expect = 6.300e-97
Identity = 179/284 (63.03%), Postives = 210/284 (73.94%), Query Frame = 0

Query:   10 HLVPVLFLLLSVTVAVVAVPARTRPLQPPP-PPTNTPTAANPTTMYDENIAKTLADYCAAAYSCGSFQGCGNWSCKSCQLHPNAESLRFSGGTNGTGVGRGSVSGMVIHDPDLNKVILAFAGTQVTDLIVWANNLNGELIDYPACGGNGCQVHAGFYADYQAIAPSLKESLGYVLARYPQSGLWIAGHSLGGALAMLAVADLKGNHSIHAEAVYTFGQPRVGNQAFAMHLYDITGRAQPPHAPTPYFRLVHYQDPIPHAPPVLLGFWHAPTEIFYTEDQTSYQV 293
            H    LFLLLS+  A  AV  R    QPPP   T+  T +     YDE +AK +A+YCAAAYSCGS +GCGNWSC SCQLH +AE+ RFSGG NGTGV     SG+V+HD D+NK+IL FAGTQ  DL  WANNLNGEL  Y  C   GCQVH GFYADYQA+AP+  E L Y LAR+P++ LW+ GHSLGGALAMLAVADLKGNH++  EA+YT+GQPRVGNQAFAM+   +T R     APT Y+R+VH QDPIPH PP+LLGFWHAPTE+FY E+QT Y+V
Sbjct:   12 HHASFLFLLLSLLAAGCAVEFR----QPPPRTATHGDTPSCSIAAYDEVVAKVMAEYCAAAYSCGSLEGCGNWSCNSCQLHSHAEAFRFSGGVNGTGV-----SGLVVHDSDINKIILVFAGTQAGDLAAWANNLNGELTGYTPCADAGCQVHTGFYADYQALAPAFLEPLSYALARFPRASLWVTGHSLGGALAMLAVADLKGNHAVRIEALYTYGQPRVGNQAFAMNFIGLTRRQD---APTSYYRVVHAQDPIPHVPPILLGFWHAPTEVFYNEEQTKYEV 283

The following BLAST results are available for this feature:

BLAST of NO11G00680.1 vs.

BLAST of NO11G00680.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM25157.1	6.300e-97	63.03	lipase family protein [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO11G00680	NO11G00680	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO11G00680.1	NO11G00680.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO11G00680.1.cds1	NO11G00680.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO11G00680.1.cds2	NO11G00680.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO11G00680.1.cds3	NO11G00680.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO11G00680.1.cds4	NO11G00680.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO11G00680.1.cds5	NO11G00680.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr11:286635..289158-
coding sequence from alignment at chr11:286635..289158-

mRNA sequence

>NO11G00680.1 ID=NO11G00680.1|Name=NO11G00680.1|organism=Nannochloropsis oceanica|type=mRNA|length=1855bp
ATAATACAGCTTCAAAACGCATCTATTTTTGGGTGTTACGGTTATAGAAG
TTCAGACCGACGACCAAGCAAAGTAACAAACTCATGTGTCTACAGGTGTG
AAATGCAAGCACTCACGCAGAAAACAAACAAGGCGCTGGTTGGCGTGCGG
TCTCTGATAAAGCAGCGGTTTCCTTGAAAAAGACACAACACGCAAAACCG
CGAGTCGGCACGAGTTGTTGTGCTTCTTCGGTGGCATTCACACCAAACTA
CACACAACGCATCCAAAAAGACAGATATGCCGCCGCTACCAGGTAGCTGC
GGCCACCTTGTCCCCGTCCTCTTTCTCCTGCTGTCCGTGACGGTCGCTGT
TGTCGCAGTGCCCGCCCGCACTCGGCCCCTTCAACCTCCCCCTCCTCCCA
CGAACACGCCCACTGCTGCCAATCCCACAACGATGTACGATGAAAACATA
GCCAAGACCCTGGCGGATTATTGTGCCGCCGCCTATTCTTGCGGATCCTT
CCAAGGGTGTGGGAACTGGAGCTGCAAGTCGTGTCAGCTCCACCCGAACG
CTGAATCGTTGCGTTTCTCGGGCGGGACTAACGGCACAGGCGTCGGCAGG
GGCAGCGTTAGCGGCATGGTTATCCACGACCCAGACTTGAACAAGGTCAT
TTTGGCATTTGCGGGAACACAAGTAACGGATTTGATTGTGTGGGCAAATA
ATCTGAATGGTGAATTGATTGATTACCCGGCTTGTGGGGGAAATGGCTGC
CAAGTACACGCAGGGTTTTATGCCGATTATCAGGCGATTGCCCCCTCCCT
GAAGGAATCTCTCGGCTACGTCCTCGCCCGCTACCCGCAATCGGGTCTAT
GGATAGCGGGGCATTCCCTGGGGGGAGCTCTGGCGATGCTGGCTGTGGCG
GATCTGAAGGGAAACCACTCGATACATGCCGAGGCCGTATACACGTTCGG
CCAGCCCCGCGTGGGCAACCAAGCTTTCGCCATGCATCTCTACGATATCA
CGGGTCGTGCCCAGCCACCCCATGCCCCCACCCCTTACTTCCGCCTTGTC
CACTACCAAGACCCTATCCCCCACGCTCCGCCTGTTCTTTTGGGGTTCTG
GCACGCGCCGACTGAAATTTTTTATACTGAAGATCAGACGAGCTATCAGG
TCTGCAACGATTCAGGTGAGGACTTTTACTGCTCCAACTCTTTCTTGTTC
GCTTACCGAGTAGAAGATCATCTAAATTACCTCGGAGTTCCTTTTTAGTG
GGGAAGACAGGGATGAGGTGGAGAGGGATGGATGGCGAGTGAAGGGCCAC
ACTGAAATCACTTCAGTGTACCGTTGTAGAGAAGGAAGGAGGGAGGGGCT
GTCAGAAATAGCATGAAGAAAGGGAGGGAGGGATGGAGGGGGGTGTATAC
TTTGCATGTCAGTAGATTTGGTGGGGTTGGAGGTCGCACGTGAGGGTGTA
TAGATAGGCCGAGGGCGCGAGGAAAGGAGACGAAGAGGAAGTCAGGAGAC
TCAGACAGGGACAGAAAAGGCAGCAGCAGCAACAGCAGCAGTTGTGTTAG
TAGGAGTATCACCAAACAGGTGATGAAAGAAGAGGGGCAGGAATGTGTGG
GTCACACGATTTGTGTAGAGATGGTGCGGCGGGGATGGTCGGGGAGGAAA
TGAGGTTGCCATGGACTCACCGGAAGGACGAACCTCGGGCACTACGACGG
GCGGGGATGGGACGGAGAGCTTCGAACTTTTTTAACACGTGCAAGGTACG
CCCCACTCGCTGGACGTGAAGCATTAAAAGATGGGTGGCAAGTCCAGTAG
TTCAAAGATTGGTTTTGAGGCGGAAAGCAAATTTCACCACACTCGTTTAC
TGTGC

protein sequence of NO11G00680.1

>NO11G00680.1-protein ID=NO11G00680.1-protein|Name=NO11G00680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=324bp
MPPLPGSCGHLVPVLFLLLSVTVAVVAVPARTRPLQPPPPPTNTPTAANP
TTMYDENIAKTLADYCAAAYSCGSFQGCGNWSCKSCQLHPNAESLRFSGG
TNGTGVGRGSVSGMVIHDPDLNKVILAFAGTQVTDLIVWANNLNGELIDY
PACGGNGCQVHAGFYADYQAIAPSLKESLGYVLARYPQSGLWIAGHSLGG
ALAMLAVADLKGNHSIHAEAVYTFGQPRVGNQAFAMHLYDITGRAQPPHA
PTPYFRLVHYQDPIPHAPPVLLGFWHAPTEIFYTEDQTSYQVCNDSGEDF
YCSNSFLFAYRVEDHLNYLGVPF*

mRNA from alignment at chr11:286635..289158-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO11G00680.1 ID=NO11G00680.1|Name=NO11G00680.1|organism=Nannochloropsis oceanica|type=mRNA|length=2524bp|location=Sequence derived from alignment at chr11:286635..289158- (Nannochloropsis oceanica)
ATAATACAGCTTCAAAACGCATCTATTTTTGGGTGTTACGGTTATAGAAG
TTCAGACCGACGACCAAGCAAAGTAACAAACTCATGTGTCTACAGGTGTG
AAATGCAAGCACTCACGCAGAAAACAAACAAGGCGCTGGTTGGCGTGCGG
TCTCTGATAAAGCAGCGGTTTCCTTGAAAAAGACACAACACGCAAAACCG
CGAGTCGGCACGAGTTGTTGTGCTTCTTCGGTGGCATTCACACCAAACTA
CACACAACGCATCCAAAAAGACAGATATGCCGCCGCTACCAGGTAGCTGC
GGCCACCTTGTCCCCGTCCTCTTTCTCCTGCTGTCCGTGACGGTCGCTGT
TGTCGCAGTGCCCGCCCGCACTCGGCCCCTTCAACCTCCCCCTCCTCCCA
CGAACACGCCCACTGCTGCCAATCCCACAACGATGTACGATGAAAACATA
GCCAAGACCCTGGCGGATTATTGTGCCGCCGCCTATTCTTGCGGATCCTT
CCAAGGGTGTGGGAACTGGAGCTGCAAGTCGTGTCAGGCAAGGCGATGGA
AGGGACGGGAAGGGGGAAAGAAGGGAAAGAGAGGGCAAATTGTGCAGAAA
GAATGGGTGTTTAAGAGGGTAAGGAGGAAGCGGGGGGAAAGGAACGATGA
CTAGCTAAACCTCCTGTGTTTTCCTTCTTTCTTAGCTCCACCCGAACGCT
GAATCGTTGCGTTTCTCGGGCGGGACTAACGGCACAGGCGTCGGCAGGGG
CAGCGTTAGCGGCATGGTTATCCACGACCCAGACTTGAACAAGGTCATTT
TGGCATTTGCGGGAACACAAGTAACGGATTTGATTGTGTGGGCAAATAAT
CTGAATGGTGAATTGATTGATTACCCGGCTTGTGGGGGAAATGGCTGCCA
AGTACACGCAGGGTTTTATGCCGATTATCAGGTAAGGTGTCACGGAGGGT
TGGGAAGGGCGCTGGATGGGACAGCTAGGTACGCAGGAAGTTCTCTTTTT
TAGTTTTAAAGAAATCCTGTGCTAGTGTGTATATATTGGCTTACTCGCGG
CTTATTTTTCCAATCATGACTCCACGTTCCTAATATCCTCCTCTTTCACC
CCCTCCAGGCGATTGCCCCCTCCCTGAAGGAATCTCTCGGCTACGTCCTC
GCCCGCTACCCGCAATCGGGTCTATGGATAGCGGGGCATTCCCTGGGGGG
AGCTCTGGCGATGCTGGCTGTGGCGGATCTGAAGGGAAACCACTCGATAC
ATGCCGAGGCCGTATACACGTTCGGTACGTCGTCATTATCGTCGTCAGTT
ATATTGCCATCTCCTTATCTTCACCACGCTTCGTGTCTCTATCTCTCGCT
TCATTGTTCACCTTTCGGCTTTTACTCACACTCCCTCCCTCCTTCCCTCC
GCCCCTCGCTCCTTCAGGCCAGCCCCGCGTGGGCAACCAAGCTTTCGCCA
TGCATCTCTACGATATCACGGGTCGTGCCCAGCCACCCCATGCCCCCACC
CCTTACTTCCGCCTTGTCCACTACCAAGACCCTATCCCCCACGCTCCGCC
TGTTCTTTTGGGGTTCTGGCACGCGCCGACTGAAATTTTTTATACTGAAG
ATCAGACGAGCTATCAGGTGGGGAGGGAGGGGGGGAGGGAAGGGTAAGGC
AGCAGGTGTTTTCTAGGCTCGCACTCTTAATACCTTTGAAAACGAGCTCA
AGAAAGTAGCAAAGATGTCATTAAGTCACAAGTAATCTTCTCTCTGATAT
CTCTGAGGCTCGATTGTCTCCATCGGCTCACATCCGCTCCCTTAATTCCC
CCCTTCCCTCTCTCTTAGGTCTGCAACGATTCAGGTGAGGACTTTTACTG
CTCCAACTCTTTCTTGTTCGCTTACCGAGTAGAAGATCATCTAAATTACC
TCGGAGTTCCTTTTTAGTGGGGAAGACAGGGATGAGGTGGAGAGGGATGG
ATGGCGAGTGAAGGGCCACACTGAAATCACTTCAGTGTACCGTTGTAGAG
AAGGAAGGAGGGAGGGGCTGTCAGAAATAGCATGAAGAAAGGGAGGGAGG
GATGGAGGGGGGTGTATACTTTGCATGTCAGTAGATTTGGTGGGGTTGGA
GGTCGCACGTGAGGGTGTATAGATAGGCCGAGGGCGCGAGGAAAGGAGAC
GAAGAGGAAGTCAGGAGACTCAGACAGGGACAGAAAAGGCAGCAGCAGCA
ACAGCAGCAGTTGTGTTAGTAGGAGTATCACCAAACAGGTGATGAAAGAA
GAGGGGCAGGAATGTGTGGGTCACACGATTTGTGTAGAGATGGTGCGGCG
GGGATGGTCGGGGAGGAAATGAGGTTGCCATGGACTCACCGGAAGGACGA
ACCTCGGGCACTACGACGGGCGGGGATGGGACGGAGAGCTTCGAACTTTT
TTAACACGTGCAAGGTACGCCCCACTCGCTGGACGTGAAGCATTAAAAGA
TGGGTGGCAAGTCCAGTAGTTCAAAGATTGGTTTTGAGGCGGAAAGCAAA
TTTCACCACACTCGTTTACTGTGC

Coding sequence (CDS) from alignment at chr11:286635..289158-

>NO11G00680.1 ID=NO11G00680.1|Name=NO11G00680.1|organism=Nannochloropsis oceanica|type=CDS|length=972bp|location=Sequence derived from alignment at chr11:286635..289158- (Nannochloropsis oceanica)
ATGCCGCCGCTACCAGGTAGCTGCGGCCACCTTGTCCCCGTCCTCTTTCT
CCTGCTGTCCGTGACGGTCGCTGTTGTCGCAGTGCCCGCCCGCACTCGGC
CCCTTCAACCTCCCCCTCCTCCCACGAACACGCCCACTGCTGCCAATCCC
ACAACGATGTACGATGAAAACATAGCCAAGACCCTGGCGGATTATTGTGC
CGCCGCCTATTCTTGCGGATCCTTCCAAGGGTGTGGGAACTGGAGCTGCA
AGTCGTGTCAGCTCCACCCGAACGCTGAATCGTTGCGTTTCTCGGGCGGG
ACTAACGGCACAGGCGTCGGCAGGGGCAGCGTTAGCGGCATGGTTATCCA
CGACCCAGACTTGAACAAGGTCATTTTGGCATTTGCGGGAACACAAGTAA
CGGATTTGATTGTGTGGGCAAATAATCTGAATGGTGAATTGATTGATTAC
CCGGCTTGTGGGGGAAATGGCTGCCAAGTACACGCAGGGTTTTATGCCGA
TTATCAGGCGATTGCCCCCTCCCTGAAGGAATCTCTCGGCTACGTCCTCG
CCCGCTACCCGCAATCGGGTCTATGGATAGCGGGGCATTCCCTGGGGGGA
GCTCTGGCGATGCTGGCTGTGGCGGATCTGAAGGGAAACCACTCGATACA
TGCCGAGGCCGTATACACGTTCGGCCAGCCCCGCGTGGGCAACCAAGCTT
TCGCCATGCATCTCTACGATATCACGGGTCGTGCCCAGCCACCCCATGCC
CCCACCCCTTACTTCCGCCTTGTCCACTACCAAGACCCTATCCCCCACGC
TCCGCCTGTTCTTTTGGGGTTCTGGCACGCGCCGACTGAAATTTTTTATA
CTGAAGATCAGACGAGCTATCAGGTCTGCAACGATTCAGGTGAGGACTTT
TACTGCTCCAACTCTTTCTTGTTCGCTTACCGAGTAGAAGATCATCTAAA
TTACCTCGGAGTTCCTTTTTAG

Synonyms

Publications