NO11G00050, NO11G00050 (gene) Nannochloropsis oceanica

Overview
NameNO11G00050
Unique NameNO11G00050
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1687
Alignment locationchr11:9584..11270 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:9584..11270 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO11G00050 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR081ncniR081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G00050.1NO11G00050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|355916gene_10720Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G00050.1NO11G00050.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G00050 ID=NO11G00050|Name=NO11G00050|organism=Nannochloropsis oceanica|type=gene|length=1687bp
ATGGTGCCCCAACCACCACCACCACCGCGCTCCTCTTCTTCGTCCTCCTC
TTCCTCCTCGCCCACCACCACCACCAAGAACGACCCGCCTTCCTCTCCTC
CAAACCATCCTCCCCCTCCTGCCCACCCACGCCCCCCCCAGCCGTCCGAC
GGAGGGCGTAAAGGCGGTGGTGTCGCTTCCACTACTATCGCTCCTTCTGC
CGCGGGTGGGGGTGCCACTGGAGGAGGGGCTCTGAGCCCGGCATCGTGTC
GGTTGTGCCTGGGTATGACCCTGATGACGAGCAAGATGAGGAACGCCAGG
CGACCACCCACGTGCTACGGCATCACACGGACGAGCACTCGGCCGCATCC
ACCCCTTGACGAGgtatcacggccatctgcgctccatccgcccctccctc
actccctccctccctctctccctctgatcgactcaaaatagctctttggc
ttcctcacacccacctcttccttcctcccttctcctccttccccccttgg
cagCCCCGAGACGCCTACATCGACGAGGTTCTTCGCAGCGGTGGCCAGGC
CCGGTGGACGTACCTGTGCGTGGGGGCCAGCGAGACGCTGGCAGCAAAAG
CAACCACCAAAACCACCTCTGCAAGGGCAGAGCTAGGAGCAGGAGCAGGT
GCAGGAGCAGGAGCTGCGGTAGCGCCAGCACCAGGAGCCATTCCCTCCTG
CCCTTCCTCGTCGACGGTGGGGGGGGACGAGGGAGGGTGGGAGGCACCGG
GGGCGGACCTGGCCGCTCTGCCCGTGTGCCAGGGCCTGCTGGTCTTCATG
GATGGGGAGGAGTATGGAGAGGAGGCCGGGATGCAGCAGGGCGCAAGACG
ACGACACCGGCCGGGCTTGGAGGGCAGTCTCGGTGGCCGGTCCACAGACA
CAGACATCGTGGGGGGGGCGATCGGGAACCGCCGTCGCACTTCCTCCTCG
TCTTCCCCTTCCTCCACCCCTCATTCGGCCTTCCCTCTGGAGCCTCCCTC
GTCCAGCGCCCTGGAGGAGGCGGCTCGACGGGTGGGTTCTTTCTGGTCGA
ATGCCTCAGAAGACTTCGCCAACAAGgtacggtgcggaagaaggaaggga
ggaggaggaggaggaggaggaggaggaggaggcgccctccttccctctat
tcctttcttcctatttttacctgttcttgtgtttagttgctgacatttct
ctccctccctccctcccgtcctccctctctcagTACGTCCGGTCTAGCAG
GAAACTGGTGGGGGCCATGGAAAGGCAGGCCCAGCAGGTCCTGGTCACGG
GGCGCAGGTTGGTGGGGGGGAAGTGGGGAGGGAAGGACGGCAAAGGGGAG
GATGGGGGGGGGGAAGGAGGGACGAAGGGAGGGGCGGGATGAGGGCCATG
CGAGCCAGAACAGCCCCCGGCGTTCCTGCCCCCGTCCAGGTCGCTAGGGG
AGAGGGTGTATAGAAGGGGCACGTGTATGTAGATGTGAGAGGGGCGAACA
GAGCGGGCGCGCTAGCAAGGAAGGGGAGGGGACAAGGAGAACAGAATGAG
GGAGAGAGGGGAAGAGAGAAAGGCCGCATCGAGGCCCATGCGCGTACATT
TCCAAAAGTCCGCTGTGCGAGGAAAGAGTAGAAAAAGACGATGAAGAAGA
GATCGAAGAAGGAAAAAAAGAAGGAGAACGAAACGCA
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protein sequence of NO11G00050.1

>NO11G00050.1-protein ID=NO11G00050.1-protein|Name=NO11G00050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=365bp
MVPQPPPPPRSSSSSSSSSSPTTTTKNDPPSSPPNHPPPPAHPRPPQPSD
GGRKGGGVASTTIAPSAAGGGATGGGALSPASCRLCLGMTLMTSKMRNAR
RPPTCYGITRTSTRPHPPLDEPRDAYIDEVLRSGGQARWTYLCVGASETL
AAKATTKTTSARAELGAGAGAGAGAAVAPAPGAIPSCPSSSTVGGDEGGW
EAPGADLAALPVCQGLLVFMDGEEYGEEAGMQQGARRRHRPGLEGSLGGR
STDTDIVGGAIGNRRRTSSSSSPSSTPHSAFPLEPPSSSALEEAARRVGS
FWSNASEDFANKYVRSSRKLVGAMERQAQQVLVTGRRLVGGKWGGKDGKG
EDGGGEGGTKGGAG*
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Synonyms
Publications