NO10G03940, NO10G03940 (gene) Nannochloropsis oceanica

Overview
NameNO10G03940
Unique NameNO10G03940
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2556
Alignment locationchr10:1165140..1167695 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:1165140..1167695 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO10G03940 vs. NCBI_GenBank
Match: EWM25599.1 (hypothetical protein Naga_101119g1 [Nannochloropsis gaditana])

HSP 1 Score: 143.7 bits (361), Expect = 1.400e-30
Identity = 87/198 (43.94%), Postives = 110/198 (55.56%), Query Frame = 0 
Query:  210 VDPSLHDDVALQLFEPRGPAAVDVAVRSLPGLSLALAIDLCIRYSLVSRLEAMLFSXXXXXXXXXXXXXXXXXXR--MDRTLTILAMLNHPQHTDPLGLPSLTPVTATAATGSTAEYYPPPPSHPCSVLRRIGLFFSGHGRLDLVRRLLDGCRRRLSPSAPSSLSXSLPDEIGSDALFLAVLLHDPSLVIDVALASGR 406
            +DP LHD   LQL EPRG +AVD A+  +PG+SLALAIDLCIR+SLVSRLE +LF                      + RTL++L  L+    TDP GL SL  V  T  + + A YYPPPPSHPCS +RR+GLFF+ HGR +                               +A FL++LL DP L I++ALA+GR
Sbjct:    1 MDPFLHDAAILQLCEPRGASAVDAAIAFMPGVSLALAIDLCIRHSLVSRLERLLFPSLPSSSPSFSSSFPPETEATVLARTLSLLLQLDDSFSTDPQGLASLACVHGTETSAADA-YYPPPPSHPCSAIRRVGLFFAQHGREE-------------------------------EAFFLSLLLRDPKLTIEIALAAGR 166
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BLAST of NO10G03940 vs. NCBI_GenBank
Match: GAX28742.1 (hypothetical protein FisN_25Lh204 [Fistulifera solaris])

HSP 1 Score: 79.0 bits (193), Expect = 4.300e-11
Identity = 73/243 (30.04%), Postives = 104/243 (42.80%), Query Frame = 0 
Query:  148 PTPAPLPPGTLQLLAVHEGGLLLRSSXXXSSLHLLPLDHPTLRMGMLLAAGHITRAVKWAQGVDPSLHDDVALQLFEPRGPAAVDVAVRSLPGLSLALAIDLCIRYSLVSRLEAMLFSXXXXXXXXXXXXXXXXXXRMDRTLTILAMLNHPQHTDPLGLPSLTPVTATAATGSTAEYYPPPPSHPCSVLRRIGLFFSGHGRLDLVRRLLDGCRRRLSPSAPSSLSXSLPDEIGSDALFLAVLL 391
            P PA LP     +L    G L+L +      ++ L L+HP +R+G LLA+G I RA +W    D + H+ +A  L E RG AA  +A+R L GLSL   IDLC+RY  V RLE +                     ++D    +LA +  P+     G+ S+T                            +G +   HGR++ VR+L   C R             L ++   DALFL  LL
Sbjct:  979 PDPALLPLVQPTVLGYQSGSLILST---LRGVYALSLEHPIMRLGTLLASGQIERASQWISAFDRNSHEGLAYFL-ERRGHAA--LALRHLNGLSLETVIDLCMRYDEVDRLEDI-----------AETQGVRGLRKVDMGRGVLASIFGPES----GVGSITV--------------------------SVGAYLLAHGRIETVRQLASECLR-------------LDEQGKKDALFLGTLL 1161
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BLAST of NO10G03940 vs. NCBI_GenBank
Match: XP_002291004.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED91111.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 71.6 bits (174), Expect = 6.800e-9
Identity = 46/116 (39.66%), Postives = 61/116 (52.59%), Query Frame = 0 
Query:  148 PTPAPLPPGTLQLLAVHEGGLLLRSSXXXSSLHLLPLDHPTLRMGMLLAAGHITRAVKWAQGVDPSLHDDVALQLFEPRGPAAVDVAVRSLPGLSLALAIDLCIRYSLVSRLEAML 264
            P PA        +L  H GGLL+ +S   S L L+P+ HP +R+G LL A  + +A KW      S HD +A  L   RG     +A+R L GLS+   IDLC+RY     LE +L
Sbjct: 1198 PIPAVTSLMYPHILTYHSGGLLVSTS---SGLRLIPMSHPLIRIGTLLGANLVEKARKWVLASPKSEHDSMANFLIR-RGHTI--MALRDLDGLSVETYIDLCMRYEYTEELEQLL 1307
[Close]
BLAST of NO10G03940 vs. NCBI_GenBank
Match: GAX21996.1 (hypothetical protein FisN_25Hh204 [Fistulifera solaris])

HSP 1 Score: 68.6 bits (166), Expect = 5.800e-8
Identity = 46/113 (40.71%), Postives = 62/113 (54.87%), Query Frame = 0 
Query:  148 PTPAPLPPGTLQLLAVHEGGLLLRSSXXXSSLHLLPLDHPTLRMGMLLAAGHITRAVKWAQGVDPSLHDDVALQLFEPRGPAAVDVAVRSLPGLSLALAIDLCIRYSLVSRLE 261
            P PA LP     +L    G L+L +      ++ L L+HP LR+G LLA+G I RA +W    + + H+ +A  L E RG A   +A+R L  LSL    DLC+RY  V RLE
Sbjct:  979 PDPALLPLVQPTVLGYQSGSLILST---LRGVYALSLEHPILRLGTLLASGQIERASQWISAFERNSHEGLAYFL-ERRGHAR--LALRHLNDLSLETVTDLCMRYDEVDRLE 1085
The following BLAST results are available for this feature:
BLAST of NO10G03940 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
EWM25599.11.400e-3043.94hypothetical protein Naga_101119g1 [Nannochloropsi... [more]
GAX28742.14.300e-1130.04hypothetical protein FisN_25Lh204 [Fistulifera sol... [more]
XP_002291004.16.800e-939.66predicted protein [Thalassiosira pseudonana CCMP13... [more]
GAX21996.15.800e-840.71hypothetical protein FisN_25Hh204 [Fistulifera sol... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR016ngnoR016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G03940.1NO10G03940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585438gene_3814Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101119g1gene4911Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G03940.1NO10G03940.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G03940 ID=NO10G03940|Name=NO10G03940|organism=Nannochloropsis oceanica|type=gene|length=2556bp
ATGCGCAGGCAGGTGGCCACATTAAGTTTCTCACATCCGCATGCCTCTTT
CTATGCCCCCACCACATCGCCAGCCCCGCTCCTCCCTCCCTTCCTCGTCC
TCCCTCCCTCCTTTGTCCCTCCTGTGGGCGGCCGGCACTCTCTTCTACTC
CACTCCGACCTCTGTCCGCTGCTGCCTCCTCGCGTCCACGGCCTTCTCGA
GGGAGGGGGGGGGGGGGAGGAGGAAGGAGGGAGGGAGGGAGGGAACGACG
AGGTGGTGATTTTGGATATGGAGATAGGGAGTGTCAGGgtaagaggtaga
aggagagaggaaggaagggagggagggagggagggaagggacaccctcat
caactacatgcaccactcactctcaactctccctccctcctctccttctc
tctccagCCGTCCGTCCCTCCCTCCTCCTCCCCCCTTTTGCAAGCCGCCT
TGTCTCCTTTGGGTGACGTGGTTGAGGATCTGGCGCCACCCCAGGACGAG
CCGGCCGAATGCCTGTGGCCTCGACAGAGGCAGTTCAAgtgcggacggag
ggcgggcgggcgggcgggcgggcgggagggagggagggagggcaggtgtt
catactctcggtcctatatatacacacacttatatcattatgatgagtta
gattatatagatacatacatagatacatacatatgtacaaatacatatac
atacacatccacgtatgtatatacatatatagatagatatatagatatat
agatatggatatatagatatagatatagatacagatgtagatgcgtgtgt
ataaacttatgtatatatatatacatatatctatatatatatacatagat
gtagatatagatatatagatatagatatatagatatagatacagatgtag
atgcgtgtgtgtaaacttatgtcgttgtgatgttttctccgtgatcttta
tcatcctccagGTATCTTCACGCCTCCTTCTACCCGACGCCCGCGCCTCT
TCCTCCGGGTACCTTGCAGTTGCTGGCCGTGCATGAGgtagggagggagg
gagggagggagggagggagggagggaaagacgcgctcatttcttcccctt
ggtcatgtttctgctctctagGGGGGCCTCCTCCTCCGTTCCTCCTCCTC
CTCCTCCTCCCTTCACCTCCTCCCCCTCGACCACCCCACCCTCCGCATGG
GCATGCTCCTCGCTGCCGGCCACATCACACGAGCTGTCAAGTGGGCGCAG
gtagggagggagagagggagggaggaagggagggaggtaatgctggtatt
gcttttggcgcactttcaggcattgaaaagaataacctgccgttcctcac
tccctccctccctccctccctccctccctcctcccagGGCGTGGACCCTT
CCCTCCACGATGACGTGGCCTTGCAACTCTTCGAGCCCCGTGGACCTGCT
GCAGTGGATGTGGCTGTCAGATCCCTTCCAGgtagggaagaagggaggga
gggaggtggggaaggaaggtaggaaaggagggagggagggagggagggga
ggaaggaaggagggaaggaagattttgctgaggctcctcttcttgtcctt
gttctcgttgatagGCCTGTCGTTGGCATTGGCCATCGATCTCTGCATCC
GATATAGCCTCGTCTCCCGCCTTGAAGCCATGCTCTTCTCCGCTTCTTCT
TCCTCCTCCTTCTCCTCCTCCTCATCGGCCGAAGAGGCCACGGCCCGGAT
GGATAGGACATTGACCATTCTGGCCATGgtaaattcctttttccctccct
ttctctccctccctttctccttttctactttccttcatcctttcctccct
tcttttttgtcgctcgtcgtgatatctctgaccttccttccctccctcct
tccttgcctccttcctctctttcctccctccttcagCTCAACCATCCCCA
GCACACCGACCCCCTCGGCCTCCCCTCCTTGACCCCTGTAACTGCAACGG
CAGCAACAGGATCAACAGCAGAGTACTACCCTCCTCCTCCTTCCCACCCT
TGCTCGGTCTTGCGGAGGATTGGGCTCTTTTTCTCGGGCCACGGCCGgta
aggaaggcgtggtggggggggggggagggagggaaggagagggagggagg
gagggggaaagagtagtaatatgatgagtgatagttctctgttcaacgca
tgaagtctgctcgacatgtatattaaccccccaattttccatcctccctt
atccccctcagTCTGGATCTCGTCCGTCGTCTCCTCGATGGATGCCGCCG
ACGCCTTTCCCCCTCTGCTCCTTCTTCCCTTTCTCCCTCGCTGCCTGATG
AGATAGGGAGTGATGCTCTCTTCCTTGCCGTCCTTCTTCATGATCCATCT
CTGGTGATTGACGTGGCTCTGGCCTCGGGACGGCGAGAGGCTGCGGCGGC
TGTGTTAAGTGGGGGCAATGCAGGAAAGGAGGGAGGGTCGGAGGATGAAG
AAAAATTAATGCAGGCCTGGAAGGAGCTGTATGGGGAGAGAGTAGGCACA
TTATGA
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protein sequence of NO10G03940.1

>NO10G03940.1-protein ID=NO10G03940.1-protein|Name=NO10G03940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=446bp
MRRQVATLSFSHPHASFYAPTTSPAPLLPPFLVLPPSFVPPVGGRHSLLL
HSDLCPLLPPRVHGLLEGGGGGEEEGGREGGNDEVVILDMEIGSVRPSVP
PSSSPLLQAALSPLGDVVEDLAPPQDEPAECLWPRQRQFKYLHASFYPTP
APLPPGTLQLLAVHEGGLLLRSSSSSSSLHLLPLDHPTLRMGMLLAAGHI
TRAVKWAQGVDPSLHDDVALQLFEPRGPAAVDVAVRSLPGLSLALAIDLC
IRYSLVSRLEAMLFSASSSSSFSSSSSAEEATARMDRTLTILAMLNHPQH
TDPLGLPSLTPVTATAATGSTAEYYPPPPSHPCSVLRRIGLFFSGHGRLD
LVRRLLDGCRRRLSPSAPSSLSPSLPDEIGSDALFLAVLLHDPSLVIDVA
LASGRREAAAAVLSGGNAGKEGGSEDEEKLMQAWKELYGERVGTL*
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Synonyms
Publications