NO10G03540, NO10G03540 (gene) Nannochloropsis oceanica

Overview
NameNO10G03540
Unique NameNO10G03540
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length810
Alignment locationchr10:1007411..1008220 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:1007411..1008220 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO10G03540 vs. NCBI_GenBank
Match: EWM25317.1 (hypothetical protein Naga_100281g8 [Nannochloropsis gaditana])

HSP 1 Score: 159.8 bits (403), Expect = 6.400e-36
Identity = 77/141 (54.61%), Postives = 105/141 (74.47%), Query Frame = 0 
Query:    6 TTTTAATAKAFISDHEIQDSWATDPILKSAKRLMNGDHANLVVDMSLGNEVKEIFSDPDTTYAMLQATPLFNVLPGVKALRAKAKEDFTKTDSMAILETYRKFVATAIKGMKDMANPVALAETMQKVANSMQPSTLQADGT 147
            T  TAATA +   + +IQDSW+ D +L  A+RL+NGDHA ++ DMS+G E++EIF +P+ +Y +LQ  P+F VL GVK L AK KE FTK DS+++LE+YR FV+TAIK MKDMA+PV +A TMQK +++M P T   DG+
Sbjct:   37 TDATAATATSAGEEEDIQDSWSFDSVLSGARRLINGDHAGILADMSMGKEMQEIFENPEVSYQLLQVFPMFKVLNGVKELSAKPKELFTKADSLSVLESYRNFVSTAIKNMKDMADPVGMATTMQKYSDAMSPVTQNPDGS 177
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BLAST of NO10G03540 vs. NCBI_GenBank
Match: XP_005854419.1 (hypothetical protein NGA_0231800 [Nannochloropsis gaditana CCMP526] >EKU21945.1 hypothetical protein NGA_0231800 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 158.7 bits (400), Expect = 1.400e-35
Identity = 76/141 (53.90%), Postives = 105/141 (74.47%), Query Frame = 0 
Query:    6 TTTTAATAKAFISDHEIQDSWATDPILKSAKRLMNGDHANLVVDMSLGNEVKEIFSDPDTTYAMLQATPLFNVLPGVKALRAKAKEDFTKTDSMAILETYRKFVATAIKGMKDMANPVALAETMQKVANSMQPSTLQADGT 147
            T  TAAT+ +   + +IQDSW+ D +L  A+RL+NGDHA ++ DMS+G E++EIF +P+ +Y +LQ  P+F VL GVK L AK KE FTK DS+++LE+YR FV+TAIK MKDMA+PV +A TMQK +++M P T   DG+
Sbjct:   37 TDATAATSTSAGEEEDIQDSWSFDSVLSGARRLINGDHAGILADMSMGKEMQEIFENPEVSYQLLQVFPMFKVLNGVKELSAKPKELFTKADSLSVLESYRNFVSTAIKNMKDMADPVGMATTMQKYSDAMSPVTQNPDGS 177
[Close]
BLAST of NO10G03540 vs. NCBI_GenBank
Match: XP_005852429.1 (hypothetical protein NGA_0725900 [Nannochloropsis gaditana CCMP526] >EKU23403.1 hypothetical protein NGA_0725900 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 75.1 bits (183), Expect = 2.100e-10
Identity = 38/112 (33.93%), Postives = 66/112 (58.93%), Query Frame = 0 
Query:   23 QDSWATDPILKSAKRLMNGDHANLVVDMSLGNEVKEIFSDPDTTYAMLQATPLFNVLPGVKALRAKAKEDFTKTDSMAILETYRKFVATAIKGMKDMANPVALAETMQKVAN 135
            +DSWA +  LK A+RL++GDH +++ +M L  +++ I+S P     +L+A P+  +LPG  AL  K  +D+T  D + IL   R F   A++   +  +P    E+++K A+
Sbjct:  101 KDSWAEEWDLKLARRLLDGDHFSVLKEMVLSKDLEVIWSTPYAARRLLEANPILKMLPGAAALAKKDLDDWTPADGLQILSRLRLFAKDAMEKTMENIDPSKSMESLEKFAH 212
[Close]
BLAST of NO10G03540 vs. NCBI_GenBank
Match: EWM20189.1 (hypothetical protein Naga_101121g1 [Nannochloropsis gaditana])

HSP 1 Score: 75.1 bits (183), Expect = 2.100e-10
Identity = 38/112 (33.93%), Postives = 66/112 (58.93%), Query Frame = 0 
Query:   23 QDSWATDPILKSAKRLMNGDHANLVVDMSLGNEVKEIFSDPDTTYAMLQATPLFNVLPGVKALRAKAKEDFTKTDSMAILETYRKFVATAIKGMKDMANPVALAETMQKVAN 135
            +DSWA +  LK A+RL++GDH +++ +M L  +++ I+S P     +L+A P+  +LPG  AL  K  +D+T  D + IL   R F   A++   +  +P    E+++K A+
Sbjct:  101 KDSWAEEWDLKLARRLLDGDHFSVLKEMVLSKDLEVIWSTPYAARRLLEANPILKMLPGAAALAKKDLDDWTPADGLQILSRLRLFAKDAMEKTMENIDPSKSMESLEKFAH 212
The following BLAST results are available for this feature:
BLAST of NO10G03540 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
EWM25317.16.400e-3654.61hypothetical protein Naga_100281g8 [Nannochloropsi... [more]
XP_005854419.11.400e-3553.90hypothetical protein NGA_0231800 [Nannochloropsis ... [more]
XP_005852429.12.100e-1033.93hypothetical protein NGA_0725900 [Nannochloropsis ... [more]
EWM20189.12.100e-1033.93hypothetical protein Naga_101121g1 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G03540.1NO10G03540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G03540.1NO10G03540.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G03540 ID=NO10G03540|Name=NO10G03540|organism=Nannochloropsis oceanica|type=gene|length=810bp
ATGCTTCAGGGAGACACCACGACCACGGCGGCGACAGCAAAGGCCTTTAT
CAGCGACCATGAAATACAAGACTCGTGGGCCACTGATCCCATCCTCAAGA
GCGCCAAACGCCTTATGAATGGCGATCACGCCAACCTAGTCGTTGACATG
AGCTTGGGCAATGAGGTGAAAGAGATTTTCAGTGATCCGGACACCACTTA
CGCGATGTTGCAAGgtaagacagagggagagactgtgctcatggaacaga
cgaaaaggcaacgacctgtcgcgcgtcactcagcattttccccgtttccc
tgcgcccgcccgcccttcctccctcttccatcctcttcctgcagCCACAC
CCTTGTTCAATGTGTTACCCGGCGTGAAGGCCTTGAGAGCCAAGGCCAAA
GAGGACTTCACGAAAACAGATgtacgtattacaagagaaagcgaatctaa
gaaaagtatgcattccttcccctccacagaccctcggcgtccttctcttc
aaaaagggagagaatcaagcagctcttgtatccttcccttggagaagatc
aaatgctcgcttttcgtatgtgcttccttttttcctttgcctccatccct
gacatcacgtctttctcattccatcacatacgcacttcatcgaaattata
gAGCATGGCCATCCTTGAGACCTATCGCAAGTTTGTGGCGACGGCCATCA
AGGGCATGAAAGACATGGCGAACCCCGTCGCTCTAGCCGAAACCATGCAG
AAGGTCGCGAACTCAATGCAGCCCAGCACTCTGCAGGCTGATGGCACCAC
CGGGCCTTGA
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protein sequence of NO10G03540.1

>NO10G03540.1-protein ID=NO10G03540.1-protein|Name=NO10G03540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=150bp
MLQGDTTTTAATAKAFISDHEIQDSWATDPILKSAKRLMNGDHANLVVDM
SLGNEVKEIFSDPDTTYAMLQATPLFNVLPGVKALRAKAKEDFTKTDSMA
ILETYRKFVATAIKGMKDMANPVALAETMQKVANSMQPSTLQADGTTGP*
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Synonyms
Publications