NO10G03510, NO10G03510 (gene) Nannochloropsis oceanica

Overview
NameNO10G03510
Unique NameNO10G03510
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1281
Alignment locationchr10:1001635..1002915 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:1001635..1002915 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO10G03510 vs. NCBI_GenBank
Match: XP_005853421.1 (hypothetical protein NGA_0438900, partial [Nannochloropsis gaditana CCMP526] >EKU22940.1 hypothetical protein NGA_0438900, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 170.2 bits (430), Expect = 1.100e-38
Identity = 128/375 (34.13%), Postives = 175/375 (46.67%), Query Frame = 0 
Query:    1 MKAWQEAVDETNNNNALG-SNTNDRALAAGNDADEVDADGRWANRCTWRGDASQCVLCGSVPDDRVP--LEQGRRRRPSHLPYHGGMHSCRFSPRH-HGEAQRSLAGWEDLVLSPAAKGWAKTVGS-----KYTARLLQDIDDHQAENPGADIKLPDTNILTYDIFLYCPVADAECEYSQANMKAAFQDYLDDVAQEETAFKISSATAAVHPAISKIVNDADGDFVSAIGAPALEALHGQRAGFR-----------EPLARHHGGVGARG--------------------------------------------------------------------GPVQHAVADQSYTLLLEGFAMKAEVVVELFQGTQSSG 288
            M+AW+EA +ETN N  L     N RALA   D   VD +GRWA +    G  +QCV+CG  P          G      H+       + R S R     A+ +L   E+LVL P AKG AK +GS     KYT R+LQ +++HQ  NPGA+ KLPD NIL Y++ LYC   DA+C ++QA+MKAA + +L + A EE+AF ++++T  VHPA+   V +A  +F+ ++ AP+  +  G+   F            + L +   GV + G                                                                     PVQHAV  Q YT+LLE FAMK +VVVELFQGT+  G
Sbjct:  738 MEAWKEATEETNRNPLLSLVQGNSRALAETADPTAVDENGRWAEQVYVGGKETQCVMCGVGPGPSSSHWSTGGNDTATCHVTEE---CTSRSSFRDILAAAKNALPQNEELVLPPVAKGVAKALGSTDLAPKYTRRILQMMEEHQEANPGAEPKLPDHNILAYELSLYCNADDADCSFNQADMKAAVKLFLGEQADEESAFNVAASTTDVHPALIDYVKEASSEFLDSVKAPSHGSGCGKGLKFNVQMTAPDAASVKDLQKIFEGVASNGESLLDTINKYDERDVPFCDVKVSKPSTLFFPSIDTAQGIKFYQGLFTGNVLDKGSLWPDVTLVSPHEVAPVQHAVVGQPYTVLLENFAMKGDVVVELFQGTEKKG 1109
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BLAST of NO10G03510 vs. NCBI_GenBank
Match: XP_005854415.1 (hypothetical protein NGA_0231400, partial [Nannochloropsis gaditana CCMP526] >EKU21941.1 hypothetical protein NGA_0231400, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 154.5 bits (389), Expect = 6.300e-34
Identity = 99/243 (40.74%), Postives = 138/243 (56.79%), Query Frame = 0 
Query:    1 MKAWQEAVDETNNNNALG-SNTNDRALAAGNDADEVDADGRWANRCTWRGDASQCVLCGSVPDDRVP--LEQGRRRRPSHLPYHGGMHSCRFSPRH-HGEAQRSLAGWEDLVLSPAAKGWAKTVGS-----KYTARLLQDIDDHQAENPGADIKLPDTNILTYDIFLYCPVADAECEYSQANMKAAFQDYLDDVAQEETAFKISSATAAVHPAISKIVNDADGDFVSAIGAPALEALHGQRAG 235
            M+AW+EA +ETN N  L     N RALA   D   VD +GRWA +    G  +QCV+CG  P          G      H+       + R S R     A+ +L   E+LVL P AKG AK +GS     KYT R+LQ +++HQ  NPGA+ KLPD NIL Y++ LYC   DA+C ++QA+MKAA + +L + A EE+AF ++++T  VHPA+   V +A  +F+ ++ AP+    HG   G
Sbjct:  736 MEAWKEATEETNRNPLLSLVQGNSRALAETADPTAVDENGRWAEQVYVGGKETQCVMCGVGPGPSSSHWSTGGNDTATCHVTEE---CTSRSSFRDILAAAKNALPQNEELVLPPVAKGVAKALGSTDLAPKYTRRILQMMEEHQEANPGAEPKLPDHNILAYELSLYCNADDADCSFNQADMKAAVKLFLGEQADEESAFNVAASTTDVHPALIDYVKEASSEFLDSVKAPS----HGSGCG 971
[Close]
BLAST of NO10G03510 vs. NCBI_GenBank
Match: XP_005853420.1 (hypothetical protein NGA_0438800, partial [Nannochloropsis gaditana CCMP526] >EKU22939.1 hypothetical protein NGA_0438800, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 141.7 bits (356), Expect = 4.200e-30
Identity = 66/99 (66.67%), Postives = 80/99 (80.81%), Query Frame = 0 
Query:  252 PVQHAVADQSYTLLLEGFAMKAEVVVELFQGTQSSGVEVARVPGGMGIGETREVAWTAPAPMNGDGGNRAYVRAYHVGMPGIFAQSEVFDLLPLSVLDD 351
            PVQHAV  Q YT+LLE FAMK  VVVELFQGT+  GV VA VPGG+  GE REV+WTAP P++G  GNRAY+RAYH GMP I+++S++FDLLP SVL++
Sbjct:   49 PVQHAVVGQPYTVLLENFAMKGNVVVELFQGTEKKGVTVATVPGGIAPGEVREVSWTAPEPLDGVSGNRAYLRAYHAGMPAIYSESDLFDLLPSSVLEN 147
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BLAST of NO10G03510 vs. NCBI_GenBank
Match: EWM25329.1 (hypothetical protein Naga_101034g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 140.2 bits (352), Expect = 1.200e-29
Identity = 65/99 (65.66%), Postives = 80/99 (80.81%), Query Frame = 0 
Query:  252 PVQHAVADQSYTLLLEGFAMKAEVVVELFQGTQSSGVEVARVPGGMGIGETREVAWTAPAPMNGDGGNRAYVRAYHVGMPGIFAQSEVFDLLPLSVLDD 351
            PVQHAV  Q Y +LLE FAMK +VVVELFQGT+  GV VA VPGG+  GE REV+WTAP P++G  GNRAY+RAYH GMP I+++S++FDLLP SVL++
Sbjct:   19 PVQHAVVGQPYKVLLENFAMKGDVVVELFQGTEKKGVTVATVPGGIAPGEVREVSWTAPEPLDGVSGNRAYLRAYHAGMPAIYSESDLFDLLPSSVLEN 117
[Close]
BLAST of NO10G03510 vs. NCBI_GenBank
Match: EWM20010.1 (hypothetical protein Naga_102329g1 [Nannochloropsis gaditana])

HSP 1 Score: 125.2 bits (313), Expect = 4.100e-25
Identity = 65/143 (45.45%), Postives = 95/143 (66.43%), Query Frame = 0 
Query:   97 AQRSLAGWEDLVLSPAAKGWAKTVGS-----KYTARLLQDIDDHQAENPGADIKLPDTNILTYDIFLYCPVADAECEYSQANMKAAFQDYLDDVAQEETAFKISSATAAVHPAISKIVNDADGDFVSAIGAPALEALHGQRAG 235
            A+ +L   E+LVL P AKG AK +GS     KYT R+LQ +++HQ  NPGA+ KLPD NIL Y++ LYC   DA+C ++QA+MKAA + +L + A EE+AF ++++T  VHPA+   V +A  +F+ ++ AP+    HG   G
Sbjct:   42 AKNALPQNEELVLPPVAKGVAKALGSTDLAPKYTRRILQMMEEHQEANPGAEPKLPDHNILAYELSLYCGADDADCSFNQADMKAAVKLFLGEQADEESAFNVAASTTDVHPALIDYVKEASSEFLDSVKAPS----HGSGCG 180
The following BLAST results are available for this feature:
BLAST of NO10G03510 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 5
Match NameE-valueIdentityDescription
XP_005853421.11.100e-3834.13hypothetical protein NGA_0438900, partial [Nannoch... [more]
XP_005854415.16.300e-3440.74hypothetical protein NGA_0231400, partial [Nannoch... [more]
XP_005853420.14.200e-3066.67hypothetical protein NGA_0438800, partial [Nannoch... [more]
EWM25329.11.200e-2965.66hypothetical protein Naga_101034g2, partial [Nanno... [more]
EWM20010.14.100e-2545.45hypothetical protein Naga_102329g1 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G03510.1NO10G03510.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G03510.1NO10G03510.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G03510 ID=NO10G03510|Name=NO10G03510|organism=Nannochloropsis oceanica|type=gene|length=1281bp
ATGAAAGCTTGGCAAGAGGCCGTGGACGAGACTAACAACAACAATGCTCT
CGGTAGCAACACCAACGATCGTGCCTTGGCTGCAGGAAACGATGCCGACG
AGGTGGACGCCGACGGCCGGTGGGCGAACAGGTGTACGTGGCGCGGTGAT
GCCTCGCAGTGTGTGCTGTGCGGGTCGGTCCCGGACGACCGAGTCCCACT
GGAACAGGGACGCAGGCGACGACCCAGCCACCTGCCATATCACGGAGGCA
TGCACTCCTGCAGATTCAGTCCAAGGCATCATGGGGAAGCTCAGAGGAGC
CTTGCCGGATGGGAAGACTTAGTATTGTCGCCCGCGGCGAAGGGCTGGGC
CAAGACGGTGGGCTCCAAGTACACGGCGCGTCTCTTGCAAGATATCGACG
ATCACCAGGCGGAGAATCCCGGGGCGGATATCAAGCTGCCGGACACGAAC
ATTTTGACCTACGACATTTTCCTGTACTGCCCCGTGGCCGATGCGGAGTG
TGAGTATAGCCAGGCAAACATGAAGGCGGCATTCCAAGACTATCTCGACG
ATGTGGCGCAGGAGGAGACTGCGTTCAAGATTTCGTCGGCGACTGCAGCG
GTGCATCCGGCTATCTCTAAAATTGTGAATGATGCTGACGGAGACTTTGT
GTCGGCCATTGGGGCGCCGGCGCTAGAGGgtgtgggaagggcctctcgtt
ttctcttttcgtgacggcgcccgacaaatcttcggtgacggatgtgaaga
ctatcctggaaaagcaggtaccgacagtgatacttctggccttcatcaac
gaccaagggagcaggaagcatccttctgcagcgtgagcgtgacgaagcgc
tcagcaatgtttttcccgtccgtggacacggcggcagggaagagcttcta
tcagaagCTTTACACGGGCAACGCGCTGGATTCCGGGAGCCTCTGGCCCG
ACATCACGGTGGTGTCGGCGCACGAGGTGGCCCCGTTCAGCACGCAGTGG
CGGATCAGTCCTACACACTTTTGTTGGAGGGCTTTGCCATGAAGGCGGAA
GTGGTGGTGGAGCTGTTCCAGGGCACGCAGAGCAGCGGGGTGGAGGTGGC
CAGGGTCCCTGGTGGCATGGGCATCGGCGAGACACGCGAGGTGGCTTGGA
CGGCTCCTGCGCCCATGAATGGGGACGGTGGGAATCGGGCTTACGTGCGC
GCCTACCACGTTGGGATGCCGGGCATCTTTGCACAGAGCGAGGTCTTTGA
TCTCTTGCCCTTGTCTGTGCTGGATGACTAA
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protein sequence of NO10G03510.1

>NO10G03510.1-protein ID=NO10G03510.1-protein|Name=NO10G03510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=351bp
MKAWQEAVDETNNNNALGSNTNDRALAAGNDADEVDADGRWANRCTWRGD
ASQCVLCGSVPDDRVPLEQGRRRRPSHLPYHGGMHSCRFSPRHHGEAQRS
LAGWEDLVLSPAAKGWAKTVGSKYTARLLQDIDDHQAENPGADIKLPDTN
ILTYDIFLYCPVADAECEYSQANMKAAFQDYLDDVAQEETAFKISSATAA
VHPAISKIVNDADGDFVSAIGAPALEALHGQRAGFREPLARHHGGVGARG
GPVQHAVADQSYTLLLEGFAMKAEVVVELFQGTQSSGVEVARVPGGMGIG
ETREVAWTAPAPMNGDGGNRAYVRAYHVGMPGIFAQSEVFDLLPLSVLDD
*
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Synonyms
Publications