NO10G03390, NO10G03390 (gene) Nannochloropsis oceanica

Overview
NameNO10G03390
Unique NameNO10G03390
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1065
Alignment locationchr10:955425..956489 -

Link to JBrowse

Properties
Property NameValue
DescriptionEukaryotic translation initiation factor 4e
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:955425..956489 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003743translation initiation factor activity
GO:0003723RNA binding
GO:0003723RNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: Biological Process
TermDefinition
GO:0006413translational initiation
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR023398TIF_eIF4e-like_dom
IPR001040TIF_eIF_4E
Homology
[Close]
BLAST of NO10G03390 vs. NCBI_GenBank
Match: GAX15313.1 (hypothetical protein FisN_8Hu390 [Fistulifera solaris])

HSP 1 Score: 124.4 bits (311), Expect = 5.400e-25
Identity = 65/174 (37.36%), Postives = 100/174 (57.47%), Query Frame = 0 
Query:   45 LCEFSTVEGFWAYFHFLPRPSDIFTEVVAGSYPPQLLKRKLDGKNLEAFGLFKKGVKPEWEDPLNMQGGHWECRREPAFDLPTLDKMWRTTVMALIGETLEDG---NAITGARVVDKSRNKRPEYRLEIWTAVKEERVNEGIRMKLIEALKEGLGEGGRDGGKI-PEFVWKEHS 215
            LC   TVE FW  F+ +P+PS++F +  +        K     K +E + LFKKG++PEW DP N+ GG W CR+  +F+   LD  W    M++IGET+E     + + G RVVDKSR + P ++LE+W   +      G + +L++ L+E + +G     K+ P+F WK+HS
Sbjct:    4 LCHIRTVEDFWRNFNHIPKPSEVFFDGESRK------KVGPTAKTIEEYSLFKKGIEPEWGDPANIVGGEWFCRQ--SFEPELLDLYWMNLAMSVIGETMETDSPEDTVNGVRVVDKSRGQYPMFKLELWVRTR----RPGDKDRLLKRLQEIIKDGQHPRFKLQPKFEWKDHS 165
[Close]
BLAST of NO10G03390 vs. NCBI_GenBank
Match: XP_012211243.1 (hypothetical protein SPRG_16575 [Saprolegnia parasitica CBS 223.65] >KDO18051.1 hypothetical protein SPRG_16575 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 123.6 bits (309), Expect = 9.100e-25
Identity = 59/183 (32.24%), Postives = 102/183 (55.74%), Query Frame = 0 
Query:   11 PEVEHPLQQPWQLYLHYPTITQSLESYGKEAYQALCEFSTVEGFWAYFHFLPRPSDIFTEVVAGSYPPQLLKRKLDGKNLEAFGLFKKGVKPEWEDPLNMQGGHWECRREPAFDLPTLDKMWRTTVMALIGETLEDGNAITGARVVDKSRNKRPEYRLEIWTAVKEERVNEGIRMKLIEALKE 194
            P   H L+  W +   +     S  +YG+  ++ LC FS+VE FW Y++ +P+PS +  + V        +K+K   +++++F +FK G++PEWED  NM GG W+   +       LD++W   V+ +IGET++  N +TGARVV K++     YR E+W   ++  + + IR  ++  L +
Sbjct:    5 PTETHALESAWSI---WELRDSSKSNYGENLHR-LCTFSSVEEFWGYWNNIPKPSQVLNDGV--------VKKKFTDRSVQSFAVFKDGIRPEWEDSANMSGGEWQLSIK--LQAGPLDELWDKLVLGMIGETIDPTNEVTGARVVHKNKKDSHSYRFELWLRSRDRNLADEIRKNMVACLNQ 173
[Close]
BLAST of NO10G03390 vs. NCBI_GenBank
Match: XP_009837430.1 (hypothetical protein H257_12027 [Aphanomyces astaci] >ETV73225.1 hypothetical protein H257_12027 [Aphanomyces astaci])

HSP 1 Score: 123.2 bits (308), Expect = 1.200e-24
Identity = 58/180 (32.22%), Postives = 98/180 (54.44%), Query Frame = 0 
Query:   12 EVEHPLQQPWQLYLHYPTITQSLESYGKEAYQALCEFSTVEGFWAYFHFLPRPSDIFTEVVAGSYPPQLLKRKLDGKNLEAFGLFKKGVKPEWEDPLNMQGGHWECRREPAFDLPTLDKMWRTTVMALIGETLEDGNAITGARVVDKSRNKRPEYRLEIWTAVKEERVNEGIRMKLIEAL 192
            E  HPL   W ++     + +  +    +    LC F TVE FW Y++ LP+PS +  + V         K+KL  + +E+F  F++G+ PEWEDP+N+ GG W+   +       LD +W   V+ +IGET++  N ITGAR++ K++  +  YR E+W   ++  + + IR  +++ L
Sbjct:    5 EGTHPLHTAWSIW----ELREMSKGNYADKLHKLCTFKTVEDFWGYWNNLPKPSQVLNDGVT--------KKKLGDRAIESFCFFREGITPEWEDPINLSGGEWQVALK--LQAEELDHLWDKLVLGMIGETIDPDNEITGARIIHKNKKDQHSYRFELWLRSRDINLADVIRNDMLDCL 170
[Close]
BLAST of NO10G03390 vs. NCBI_GenBank
Match: OQS06904.1 (hypothetical protein THRCLA_01068 [Thraustotheca clavata])

HSP 1 Score: 122.1 bits (305), Expect = 2.700e-24
Identity = 59/181 (32.60%), Postives = 99/181 (54.70%), Query Frame = 0 
Query:   14 EHPLQQPWQLYLHYPTITQSLESYGKEAYQALCEFSTVEGFWAYFHFLPRPSDIFTEVVAGSYPPQLLKRKLDGKNLEAFGLFKKGVKPEWEDPLNMQGGHWECRREPAFDLPTLDKMWRTTVMALIGETLEDGNAITGARVVDKSRNKRPEYRLEIWTAVKEERVNEGIRMKLIEALKEG 195
            EH L   W ++    +   S  +YG   ++ LC FSTVE FW Y++ +P PS    + ++        K+K   +++++F +FK+G++PEWED  NM GG W+   +       LD  W   V+ ++GET++  N ITGAR+V K++     YR E+W   ++  + + IR  +I  + +G
Sbjct:    3 EHKLDSAWSIWEQRES---SKGNYGDNLHR-LCTFSTVEEFWGYWNNIPNPSQALNDGIS--------KKKFTDRSVQSFAVFKEGIRPEWEDSANMNGGEWQISIK--LQAGPLDDFWDKLVLGMLGETIDPANEITGARIVHKNKKDSHSYRFELWLRSRDRNLADEIRNNMIACMNDG 169
[Close]
BLAST of NO10G03390 vs. NCBI_GenBank
Match: XP_008876306.1 (hypothetical protein H310_11401 [Aphanomyces invadans] >ETV95132.1 hypothetical protein H310_11401 [Aphanomyces invadans])

HSP 1 Score: 120.6 bits (301), Expect = 7.700e-24
Identity = 55/180 (30.56%), Postives = 96/180 (53.33%), Query Frame = 0 
Query:   12 EVEHPLQQPWQLYLHYPTITQSLESYGKEAYQALCEFSTVEGFWAYFHFLPRPSDIFTEVVAGSYPPQLLKRKLDGKNLEAFGLFKKGVKPEWEDPLNMQGGHWECRREPAFDLPTLDKMWRTTVMALIGETLEDGNAITGARVVDKSRNKRPEYRLEIWTAVKEERVNEGIRMKLIEAL 192
            ++ HPL   W ++     + +  +    +    LC F  VE FW Y++ LP+PS +  + +         K+KL  + +E+F  F+ G+KPEWEDP+N+ GG W+   +       LD +W   V+ +IGET++    ITGAR++ K++     YR E+W   ++  + + +R  ++E L
Sbjct:    3 DMTHPLHTAWSIW----ELREMSKGNYADKLHKLCTFKCVEDFWGYWNNLPKPSQVLNDGIT--------KKKLGDRAIESFCFFRDGIKPEWEDPINLSGGEWQVALK--LQAEELDDLWEKLVLGMIGETIDPDAEITGARIIHKNKKDTHSYRFELWLRSRDLELADEVRKGMLECL 168
[Close]
BLAST of NO10G03390 vs. NCBI_GenBank
Match: POM72806.1 (Eukaryotic translation initiation factor 4E-2 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 118.6 bits (296), Expect = 2.900e-23
Identity = 68/205 (33.17%), Postives = 102/205 (49.76%), Query Frame = 0 
Query:   14 EHPLQQPWQLYLHYPTITQSLESYGKEAYQALCEFSTVEGFWAYFHFLPRPSDIFTEVVAGSYPPQLLKRKLDGKNLEAFGLFKKGVKPEWEDPLNMQGGHWECRREPAFDLPTLDKMWRTTVMALIGETLEDGNAITGARVVDKS----RNKRPEYRLEIWTAVKEERVNEGIRMKLIEALKEGLGEGGRDGGKIP-EFVWKEH 214
            +H L +PW ++           SYG + ++ LC FSTVE FW Y++ +P PS +  +           ++K   + +E F +FK G+ PEWEDP N  GG W  R+E       LD+ W   V+  IGE ++ GN +TG RV+ K+    +N    YR EIW         + IR K +E     +  G      +P EF++K+H
Sbjct:    7 KHELNEPWAIWEQREQGKNM--SYGDKLFK-LCTFSTVEEFWGYWNNIPSPSQVLFD--------GFTRKKFADRTVEGFAVFKDGIVPEWEDPENKNGGEWSIRKE--VGAQELDEFWEKLVLGAIGELIDPGNEVTGVRVIHKNNKKEKNSANNYRFEIWLRGTNRTKADEIRNKTLEV----VNPGSSGAPWVPNEFLYKKH 194
[Close]
BLAST of NO10G03390 vs. NCBI_GenBank
Match: XP_009517999.1 (hypothetical protein PHYSODRAFT_553636 [Phytophthora sojae] >EGZ30724.1 hypothetical protein PHYSODRAFT_553636 [Phytophthora sojae])

HSP 1 Score: 116.7 bits (291), Expect = 1.100e-22
Identity = 64/192 (33.33%), Postives = 96/192 (50.00%), Query Frame = 0 
Query:    8 SGGPEVEHPLQQPWQLYLHYPTITQSLESYGKEAYQALCEFSTVEGFWAYFHFLPRPSDIFTEVVAGSYPPQLLKRKLDGKNLEAFGLFKKGVKPEWEDPLNMQGGHWECRREPAFDLPTLDKMWRTTVMALIGETLEDGNAITGARVVDKS-----RNKRPEYRLEIWTAVKEERVNEGIRMKLIEALKEG 195
            + G   +H L +PW ++           SYG + ++ LC FSTVE FW Y++ +P PS +  +           ++K   + +E F +FK+G+ PEWEDP N  GG W  R+E       LD+ W   V+  IGE ++ GN +TG RV+ K+     R+    YR EIW         + IR K +E +  G
Sbjct:    2 ASGDAEKHELNEPWAIWEQREQGKNM--SYGDKLFK-LCTFSTVEEFWGYWNNIPSPSQVLFD--------GFTRKKFADRTVEGFAVFKEGIVPEWEDPENKNGGEWSIRKE--VGAQELDEFWEKLVLGAIGELIDPGNEVTGVRVIHKNNKKDKRDSGNNYRYEIWLRGVNRAKADEIRNKTLEVINPG 180
[Close]
BLAST of NO10G03390 vs. NCBI_GenBank
Match: XP_008897088.1 (hypothetical protein PPTG_05322 [Phytophthora parasitica INRA-310] >ETI34250.1 hypothetical protein F443_19217 [Phytophthora parasitica P1569] >ETK74613.1 hypothetical protein L915_18641 [Phytophthora parasitica] >ETL28035.1 hypothetical protein L916_18545 [Phytophthora parasitica] >ETL81291.1 hypothetical protein L917_18368 [Phytophthora parasitica] >ETM34497.1 hypothetical protein L914_18458 [Phytophthora parasitica] >ETN17538.1 hypothetical protein PPTG_05322 [Phytophthora parasitica INRA-310] >ETO63005.1 hypothetical protein F444_19169 [Phytophthora parasitica P1976] >ETP04146.1 hypothetical protein F441_19031 [Phytophthora parasitica CJ01A1] >ETP32224.1 hypothetical protein F442_18996 [Phytophthora parasitica P10297])

HSP 1 Score: 116.3 bits (290), Expect = 1.500e-22
Identity = 67/211 (31.75%), Postives = 103/211 (48.82%), Query Frame = 0 
Query:    8 SGGPEVEHPLQQPWQLYLHYPTITQSLESYGKEAYQALCEFSTVEGFWAYFHFLPRPSDIFTEVVAGSYPPQLLKRKLDGKNLEAFGLFKKGVKPEWEDPLNMQGGHWECRREPAFDLPTLDKMWRTTVMALIGETLEDGNAITGARVVDKSRNKRPE-----YRLEIWTAVKEERVNEGIRMKLIEALKEGLGEGGRDGGKIPEFVWKEH 214
            + G   +H L +PW ++           SYG + ++ LC FSTVE FW Y++ +P PS +  +           ++K   + +E F +FK+G+ PEWEDP N  GG W  R+E       LD+ W   V+  IGE ++ GN +TG RV+ K+  K  +     YR EIW         + IR + ++ +  G            EFV+K+H
Sbjct:    2 ASGDAEKHELNEPWAIWEQREQGKNM--SYGDKLFK-LCTFSTVEEFWGYWNNIPSPSQVLFD--------GFTRKKFADRTVEGFAVFKEGIVPEWEDPENKNGGEWSIRKE--VGAQELDEFWEKLVLGAIGELIDPGNEVTGVRVIHKNNKKDKKDSGNNYRYEIWLRGLSRAKADEIRNRTMDVVNSGSSGAPWVSN---EFVYKKH 196
[Close]
BLAST of NO10G03390 vs. NCBI_GenBank
Match: GAX96721.1 (Hypothetical protein PINS_004595 [Pythium insidiosum])

HSP 1 Score: 115.9 bits (289), Expect = 1.900e-22
Identity = 68/206 (33.01%), Postives = 101/206 (49.03%), Query Frame = 0 
Query:   14 EHPLQQPWQLYLHYPTITQSLESYGKEAYQALCEFSTVEGFWAYFHFLPRPSDIFTEVVAGSYPPQLLKRKLDGKNLEAFGLFKKGVKPEWEDPLNMQGGHWECRREPAFDLPTLDKMWRTTVMALIGETLEDGNAITGARVVDKSRNKRPE----YRLEIWTAVKEERVNEGIRMKLIEALKEGLGEGGRDGGKIP--EFVWKEH 214
            EH LQ  W +   +    +       +A   LC F TVE FW Y++ +P+ S +        +     K+  DG+ +E+  +FK GV PEWEDP N  GG W  R+E   +   LD+ W   V+  IGE  +  N ITG R++ K+  +  +    YR EIW    +  + + IR ++I+A+        R G K    EFV+KEH
Sbjct:   14 EHKLQSGWSI---WEIRDKQKNMAWSDALSKLCTFHTVEEFWGYWNNIPKVSQVL-------FDGXTRKKFADGRTVESXAIFKDGVMPEWEDPANKHGGEWSVRKE--LNADALDECWERLVLGSIGEIFDPANEITGIRIIHKNSKRDKDAGNNYRFEIWLRSTDRAIADEIRGRIIDAMNL-----DRPGPKWEPREFVYKEH 202
[Close]
BLAST of NO10G03390 vs. NCBI_GenBank
Match: XP_002287589.1 (eukaryotic translation initiation factor 4E, partial [Thalassiosira pseudonana CCMP1335] >EED95032.1 eukaryotic translation initiation factor 4E, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 115.5 bits (288), Expect = 2.500e-22
Identity = 65/180 (36.11%), Postives = 94/180 (52.22%), Query Frame = 0 
Query:   15 HPLQQPWQLYLHYPTITQSLESYGKEAYQALCEFSTVEGFWAYFHFLPRPSDIFTEVVAGSYPPQLLKRKLDGKNLEAFGLFKKGVKPEWEDPLNMQGGHWECRREPAFDLPTLDKMWRTTVMALIGETLED---GNAITGARVVDKSRNKRPEYRLEIWTAVKEERVNEGIRMKLIEAL 192
            HPLQ  W L+ H     +   ++ KE+ + LC F  +E FW Y++ +PRPS I                      +E + LFKKG++PEW DP N  GG W  R     D+  LD  W   V+ +IGE +ED   G  I GARVVDK +N  P +++E+W   K+  + E +R++L E +
Sbjct:    1 HPLQHEWVLWEHTGGGKKDANAW-KESMKQLCAFQNIEDFWRYYNHIPRPSQI----------------------IEEYSLFKKGIEPEWGDPRNKTGGEWFWRSHLEGDV--LDLFWTNLVLGVIGEAIEDPALGVHINGARVVDKGKN-YPIFKIELWIDTKDVSMREKLRVRLNEII 154
The following BLAST results are available for this feature:
BLAST of NO10G03390 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
GAX15313.15.400e-2537.36hypothetical protein FisN_8Hu390 [Fistulifera sola... [more]
XP_012211243.19.100e-2532.24hypothetical protein SPRG_16575 [Saprolegnia paras... [more]
XP_009837430.11.200e-2432.22hypothetical protein H257_12027 [Aphanomyces astac... [more]
OQS06904.12.700e-2432.60hypothetical protein THRCLA_01068 [Thraustotheca c... [more]
XP_008876306.17.700e-2430.56hypothetical protein H310_11401 [Aphanomyces invad... [more]
POM72806.12.900e-2333.17Eukaryotic translation initiation factor 4E-2 [Phy... [more]
XP_009517999.11.100e-2233.33hypothetical protein PHYSODRAFT_553636 [Phytophtho... [more]
XP_008897088.11.500e-2231.75hypothetical protein PPTG_05322 [Phytophthora para... [more]
GAX96721.11.900e-2233.01Hypothetical protein PINS_004595 [Pythium insidios... [more]
XP_002287589.12.500e-2236.11eukaryotic translation initiation factor 4E, parti... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001215NSK001215Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G03390.1NO10G03390.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|553991gene_3856Nannochloropsis oceanica (N. oceanica CCMP1779)gene
EIF4Egene4949Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G03390.1NO10G03390.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G03390 ID=NO10G03390|Name=NO10G03390|organism=Nannochloropsis oceanica|type=gene|length=1065bp
ACAGGCTAGCTACCGGTAGGAGCGCCGGACAGGACAAGCGAGACAGACGT
CATACGAAGTGCGCTATAAAAGGATGGAGAACGGCACAAGCAGCAGCGGT
GGTCCCGAAGTTGAGCACCCTCTCCAGCAGCCTTGGCAGCTCTACCTCCA
CTATCCGACTATAACGCAGTCCCTGGAAAGTTATGGCAAGGAAGCGTACC
AAGCATTGTGCGAGTTCTCGACGGTGGAGGGGTTTTGGGCCTACTTTCAT
TTCTTGCCCAGGCCCAGTGATATCTTCACTGAGGTGGTTGCAGGCAGCTA
CCCACCCCAGTTGCTGAAGCGGAAGTTAGACGGGAAGAATTTGGAGGCGT
TTGGATTGTTTAAGAAGgtgcgtttgattcctttccggagggtgggagag
aggggaggaaggtgtggtggtaattgtgcttgggtgaggagaaagaaaga
gaatagtgtgtaggtttgtctagggggaggagtcgagagggggcactcat
ctgctcttcattccacccacctctccccattcccccctccacatctcagG
GTGTCAAACCTGAATGGGAAGACCCACTTAACATGCAAGGCGGTCACTGG
GAGTGTCGTCGTGAGCCGGCTTTCGACCTCCCTACCCTTGATAAAATGTG
GCGCACGACTGTCATGGCCTTGATAGGTGAGACTTTGGAGGACGGAAATG
CCATCACCGGTGCAAGGGTGGTGGATAAGAGTAGGAATAAGCGGCCGGAG
TATCGCCTGGAAATTTGGACGGCTGTGAAGGAAGAGAGAGTGAACGAGGG
AATTCGGATGAAGTTGATTGAGGCCCTGAAGGAGGGCCTAGGAGAGGGGG
GAAGGGACGGAGGGAAGATCCCTGAGTTCGTTTGGAAGGAGCACAGTCAA
ATTGTGAATACAGGTCTGGAGGGATACGGGGGGTCGACGGTGAGCTTGAG
TGGTAGTGCAGGCGGAGGCGGCGGCGGCGGAGGAGGGGGGGGAGGTAAGG
CGGGAGGGTTGGGGTCGGCATCGGGGGTTATCAGGGACAAGGTTATGGGC
GCGCTGAGTTCATGA
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protein sequence of NO10G03390.1

>NO10G03390.1-protein ID=NO10G03390.1-protein|Name=NO10G03390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=270bp
MENGTSSSGGPEVEHPLQQPWQLYLHYPTITQSLESYGKEAYQALCEFST
VEGFWAYFHFLPRPSDIFTEVVAGSYPPQLLKRKLDGKNLEAFGLFKKGV
KPEWEDPLNMQGGHWECRREPAFDLPTLDKMWRTTVMALIGETLEDGNAI
TGARVVDKSRNKRPEYRLEIWTAVKEERVNEGIRMKLIEALKEGLGEGGR
DGGKIPEFVWKEHSQIVNTGLEGYGGSTVSLSGSAGGGGGGGGGGGGKAG
GLGSASGVIRDKVMGALSS*
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Synonyms
Publications