NO10G03390.1, NO10G03390.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G03390.1
Unique NameNO10G03390.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length883
Alignment locationchr10:955425..956489 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:955425..956489 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO10G03390.1 vs.
Match: EWM25557.1 (eukaryotic translation initiation factor 4e [Nannochloropsis gaditana])

HSP 1 Score: 366.7 bits (940), Expect = 6.200e-98
Identity = 186/276 (67.39%), Postives = 220/276 (79.71%), Query Frame = 0
Query:    1 MENGTSSSGGPEV------EHPLQQPWQLYLHYPTITQSLESYGKEAYQALCEFSTVEGFWAYFHFLPRPSDIFTEVVAGSYPPQLLKRKLDGKNLEAFGLFKKGVKPEWEDPLNMQGGHWECRREPAFDLPTLDKMWRTTVMALIGETLEDGNAITGARVVDKSRNKRPEYRLEIWTAVKEERVNEGIRMKLIEALKEGLGEGGRDGGKIPEFVWKEHSQIVNTGLEGYGGSTVSLSGSAGGGGGGGGG-GGGKAGGLGSASGVIRDKVMGALSS 270
            M+NGT+SS    +      +HPLQQPWQLYLHYPT+TQ+LESYGKEAYQALCEFSTVEGFW YF+ LP+PSD+FTE+V GS P QL +RKLDGKNLEAFGLFKKGVKPEWED LN++GGHWECRR+  FDLP+LD+MW +TV+ALIGETLEDG+ ITGARVVDK + KR EYRLE+WT+ KE  VN+ IR +L EA+KEGL EGG + G +P+FVWK+HS+ V T  EGY GST SLS S G  GGGGGG GGG+  G    S  +RDKV G + +
Sbjct:   41 MDNGTTSSSSSSISSTNGQDHPLQQPWQLYLHYPTVTQALESYGKEAYQALCEFSTVEGFWTYFYHLPKPSDVFTEMVPGSQPAQLSRRKLDGKNLEAFGLFKKGVKPEWEDALNLKGGHWECRRD--FDLPSLDRMWTSTVLALIGETLEDGSVITGARVVDKCKFKRAEYRLELWTSTKEAGVNDEIRKRLREAMKEGLVEGGMEAGVVPDFVWKDHSESVVTASEGYSGSTTSLSVSTGREGGGGGGVGGGEGRGASGLSSAMRDKVFGKVKA 314          
The following BLAST results are available for this feature:
BLAST of NO10G03390.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25557.16.200e-9867.39eukaryotic translation initiation factor 4e [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G03390NO10G03390Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G03390.1NO10G03390.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G03390.1.cds1NO10G03390.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G03390.1.cds2NO10G03390.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G03390.1 ID=NO10G03390.1|Name=NO10G03390.1|organism=Nannochloropsis oceanica|type=mRNA|length=883bp
ACAGGCTAGCTACCGGTAGGAGCGCCGGACAGGACAAGCGAGACAGACGT
CATACGAAGTGCGCTATAAAAGGATGGAGAACGGCACAAGCAGCAGCGGT
GGTCCCGAAGTTGAGCACCCTCTCCAGCAGCCTTGGCAGCTCTACCTCCA
CTATCCGACTATAACGCAGTCCCTGGAAAGTTATGGCAAGGAAGCGTACC
AAGCATTGTGCGAGTTCTCGACGGTGGAGGGGTTTTGGGCCTACTTTCAT
TTCTTGCCCAGGCCCAGTGATATCTTCACTGAGGTGGTTGCAGGCAGCTA
CCCACCCCAGTTGCTGAAGCGGAAGTTAGACGGGAAGAATTTGGAGGCGT
TTGGATTGTTTAAGAAGGGTGTCAAACCTGAATGGGAAGACCCACTTAAC
ATGCAAGGCGGTCACTGGGAGTGTCGTCGTGAGCCGGCTTTCGACCTCCC
TACCCTTGATAAAATGTGGCGCACGACTGTCATGGCCTTGATAGGTGAGA
CTTTGGAGGACGGAAATGCCATCACCGGTGCAAGGGTGGTGGATAAGAGT
AGGAATAAGCGGCCGGAGTATCGCCTGGAAATTTGGACGGCTGTGAAGGA
AGAGAGAGTGAACGAGGGAATTCGGATGAAGTTGATTGAGGCCCTGAAGG
AGGGCCTAGGAGAGGGGGGAAGGGACGGAGGGAAGATCCCTGAGTTCGTT
TGGAAGGAGCACAGTCAAATTGTGAATACAGGTCTGGAGGGATACGGGGG
GTCGACGGTGAGCTTGAGTGGTAGTGCAGGCGGAGGCGGCGGCGGCGGAG
GAGGGGGGGGAGGTAAGGCGGGAGGGTTGGGGTCGGCATCGGGGGTTATC
AGGGACAAGGTTATGGGCGCGCTGAGTTCATGA
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protein sequence of NO10G03390.1

>NO10G03390.1-protein ID=NO10G03390.1-protein|Name=NO10G03390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=270bp
MENGTSSSGGPEVEHPLQQPWQLYLHYPTITQSLESYGKEAYQALCEFST
VEGFWAYFHFLPRPSDIFTEVVAGSYPPQLLKRKLDGKNLEAFGLFKKGV
KPEWEDPLNMQGGHWECRREPAFDLPTLDKMWRTTVMALIGETLEDGNAI
TGARVVDKSRNKRPEYRLEIWTAVKEERVNEGIRMKLIEALKEGLGEGGR
DGGKIPEFVWKEHSQIVNTGLEGYGGSTVSLSGSAGGGGGGGGGGGGKAG
GLGSASGVIRDKVMGALSS*
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mRNA from alignment at chr10:955425..956489-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G03390.1 ID=NO10G03390.1|Name=NO10G03390.1|organism=Nannochloropsis oceanica|type=mRNA|length=1065bp|location=Sequence derived from alignment at chr10:955425..956489- (Nannochloropsis oceanica)
ACAGGCTAGCTACCGGTAGGAGCGCCGGACAGGACAAGCGAGACAGACGT CATACGAAGTGCGCTATAAAAGGATGGAGAACGGCACAAGCAGCAGCGGT GGTCCCGAAGTTGAGCACCCTCTCCAGCAGCCTTGGCAGCTCTACCTCCA CTATCCGACTATAACGCAGTCCCTGGAAAGTTATGGCAAGGAAGCGTACC AAGCATTGTGCGAGTTCTCGACGGTGGAGGGGTTTTGGGCCTACTTTCAT TTCTTGCCCAGGCCCAGTGATATCTTCACTGAGGTGGTTGCAGGCAGCTA CCCACCCCAGTTGCTGAAGCGGAAGTTAGACGGGAAGAATTTGGAGGCGT TTGGATTGTTTAAGAAGGTGCGTTTGATTCCTTTCCGGAGGGTGGGAGAG AGGGGAGGAAGGTGTGGTGGTAATTGTGCTTGGGTGAGGAGAAAGAAAGA GAATAGTGTGTAGGTTTGTCTAGGGGGAGGAGTCGAGAGGGGGCACTCAT CTGCTCTTCATTCCACCCACCTCTCCCCATTCCCCCCTCCACATCTCAGG GTGTCAAACCTGAATGGGAAGACCCACTTAACATGCAAGGCGGTCACTGG GAGTGTCGTCGTGAGCCGGCTTTCGACCTCCCTACCCTTGATAAAATGTG GCGCACGACTGTCATGGCCTTGATAGGTGAGACTTTGGAGGACGGAAATG CCATCACCGGTGCAAGGGTGGTGGATAAGAGTAGGAATAAGCGGCCGGAG TATCGCCTGGAAATTTGGACGGCTGTGAAGGAAGAGAGAGTGAACGAGGG AATTCGGATGAAGTTGATTGAGGCCCTGAAGGAGGGCCTAGGAGAGGGGG GAAGGGACGGAGGGAAGATCCCTGAGTTCGTTTGGAAGGAGCACAGTCAA ATTGTGAATACAGGTCTGGAGGGATACGGGGGGTCGACGGTGAGCTTGAG TGGTAGTGCAGGCGGAGGCGGCGGCGGCGGAGGAGGGGGGGGAGGTAAGG CGGGAGGGTTGGGGTCGGCATCGGGGGTTATCAGGGACAAGGTTATGGGC GCGCTGAGTTCATGA
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Coding sequence (CDS) from alignment at chr10:955425..956489-

>NO10G03390.1 ID=NO10G03390.1|Name=NO10G03390.1|organism=Nannochloropsis oceanica|type=CDS|length=810bp|location=Sequence derived from alignment at chr10:955425..956489- (Nannochloropsis oceanica)
ATGGAGAACGGCACAAGCAGCAGCGGTGGTCCCGAAGTTGAGCACCCTCT
CCAGCAGCCTTGGCAGCTCTACCTCCACTATCCGACTATAACGCAGTCCC
TGGAAAGTTATGGCAAGGAAGCGTACCAAGCATTGTGCGAGTTCTCGACG
GTGGAGGGGTTTTGGGCCTACTTTCATTTCTTGCCCAGGCCCAGTGATAT
CTTCACTGAGGTGGTTGCAGGCAGCTACCCACCCCAGTTGCTGAAGCGGA
AGTTAGACGGGAAGAATTTGGAGGCGTTTGGATTGTTTAAGAAGGGTGTC
AAACCTGAATGGGAAGACCCACTTAACATGCAAGGCGGTCACTGGGAGTG
TCGTCGTGAGCCGGCTTTCGACCTCCCTACCCTTGATAAAATGTGGCGCA
CGACTGTCATGGCCTTGATAGGTGAGACTTTGGAGGACGGAAATGCCATC
ACCGGTGCAAGGGTGGTGGATAAGAGTAGGAATAAGCGGCCGGAGTATCG
CCTGGAAATTTGGACGGCTGTGAAGGAAGAGAGAGTGAACGAGGGAATTC
GGATGAAGTTGATTGAGGCCCTGAAGGAGGGCCTAGGAGAGGGGGGAAGG
GACGGAGGGAAGATCCCTGAGTTCGTTTGGAAGGAGCACAGTCAAATTGT
GAATACAGGTCTGGAGGGATACGGGGGGTCGACGGTGAGCTTGAGTGGTA
GTGCAGGCGGAGGCGGCGGCGGCGGAGGAGGGGGGGGAGGTAAGGCGGGA
GGGTTGGGGTCGGCATCGGGGGTTATCAGGGACAAGGTTATGGGCGCGCT
GAGTTCATGA
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Synonyms
Publications