NO10G03390, NO10G03390 (gene) Nannochloropsis oceanica

Overview
NameNO10G03390
Unique NameNO10G03390
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1065
Alignment locationchr10:955425..956489 -

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Properties
Property NameValue
DescriptionEukaryotic translation initiation factor 4e
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:955425..956489 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003743translation initiation factor activity
GO:0003723RNA binding
GO:0003723RNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: Biological Process
TermDefinition
GO:0006413translational initiation
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR023398TIF_eIF4e-like_dom
IPR001040TIF_eIF_4E
Homology
BLAST of NO10G03390 vs. NCBI_GenBank
Match: EWM25557.1 (eukaryotic translation initiation factor 4e [Nannochloropsis gaditana])

HSP 1 Score: 319.7 bits (818), Expect = 8.700e-84
Identity = 154/236 (65.25%), Postives = 180/236 (76.27%), Query Frame = 0
Query:    1 MENGT--------SSSGGPEVEHPLQQPWQLYLHYPTITQSLESYGKEAYQALCEFSTVEGFWAYFHFLPRPSDIFTEVVAGSYPPQLLKRKLDGKNLEAFGLFKKGVKPEWEDPLNMQGGHWECRREPAFDLPTLDKMWRTTVMALIGETLEDGNAITGARVVDKSRNKRPEYRLEIWTAVKEERVNEGIRMKLIEALKEGLGEGGRDGGKIPEFVWKEHSQIVNTGLEGYGGST 229
            M+NGT         S+ G   +HPLQQPWQLYLHYPT+TQ+LESYGKEAYQALCEFSTVEGFW YF+ LP+PSD+FTE+V GS P QL +RKLDGKNLEAFGLFKKGVKPEWED LN++GGHWECRR+  FDLP+LD+MW +TV+ALIGETLEDG+ ITGARVVDK + KR EYRLE+WT+ KE  VN+ IR                    +P+FVWK+HS+ V T  EGY GST
Sbjct:   41 MDNGTXXXXXXXXXSTNGQ--DHPLQQPWQLYLHYPTVTQALESYGKEAYQALCEFSTVEGFWTYFYHLPKPSDVFTEMVPGSQPAQLSRRKLDGKNLEAFGLFKKGVKPEWEDALNLKGGHWECRRD--FDLPSLDRMWTSTVLALIGETLEDGSVITGARVVDKCKFKRAEYRLELWTSTKEAGVNDEIRXXXXXXXXXXXXXXXXXXXXVPDFVWKDHSESVVTASEGYSGST 272          
BLAST of NO10G03390 vs. NCBI_GenBank
Match: XP_005761801.1 (hypothetical protein EMIHUDRAFT_414699 [Emiliania huxleyi CCMP1516] >EOD09372.1 hypothetical protein EMIHUDRAFT_414699 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 139.8 bits (351), Expect = 1.200e-29
Identity = 75/185 (40.54%), Postives = 108/185 (58.38%), Query Frame = 0
Query:   11 PEVEHPLQQPWQLYLH-YPTITQSLESYGKEAYQALCEFSTVEGFWAYFHFLPRPSDIFTEVVAGSYPPQLLKRKLDGKNLEAFGLFKKGVKPEWEDPLNMQGGHWECRREPAFDLPTLDKMWRTTVMALIGETLEDGNAITGARVVDKSRNKRPEYRLEIWTAVKEERVNEGIRMKLIEALKEG 195
            P   H L+  W ++ H  P   +S E    +    LCE +TVE FW  ++ +P+PS+IF +           ++K   + +EAF +FKK +KPEWEDP N  G  W CRR  AF +P LD+ W   V+ +IGETL+ G+ I GARVVDKS N R  YRLE+W    ++ +++ +  K+ EAL +G
Sbjct:    4 PAGPHFLESEWVIWEHRAPDKNKSYE----DNMAKLCEVATVEDFWRAWNNIPKPSEIFYD--------GRTRKKFASRTVEAFSVFKKNIKPEWEDPANRSGAEWYCRR--AFTMPQLDEFWLHIVLGMIGETLDAGDEICGARVVDKSVNGRTMYRLELWFRKNDDALSKELLAKMQEALGKG 174          
BLAST of NO10G03390 vs. NCBI_GenBank
Match: OEU14111.1 (translation initiation factor eIF4e [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 139.0 bits (349), Expect = 2.100e-29
Identity = 83/220 (37.73%), Postives = 118/220 (53.64%), Query Frame = 0
Query:   12 EVEHPLQQPWQLYLHYPTITQSLESYGKEAYQALCEFSTVEGFWAYFHFLPRPSDIFTEVVAGSYPPQLLKRKLDG---KNLEAFGLFKKGVKPEWEDPLNMQGGHWECRREPAFDLPTLDKMWRTTVMALIGETL----------EDGNA----ITGARVVDKSRNKRPEYRLEIWTAVKEERVNEGIRMKLIEALKEGLGEGGRDGGKIPEFVWKEHS 215
            E  HPLQ  W ++ H            KE  + L E STVE FW YF  +P+PS++F +            RK+ G   K +E + LFKKG++PEW DP N+ GG W CR+    +L  LD  W+  VM+ +GET+          EDG++    + GARVVDKSR+  P Y+LE+W   ++  + E I+ KLIE + +G     R     P+F W++HS
Sbjct:    3 EETHPLQNEWVMWEHKANQGSKDPDKWKENMKQLYESSTVEDFWRYFQHVPKPSEVFFDGDC---------RKMVGPEAKTIEEYSLFKKGIEPEWGDPQNLTGGEWFCRQ--FLELEVLDLYWQNLVMSCVGETIDDDVAGDDDAEDGSSLLSYVNGARVVDKSRH-YPLYKLELWINTRDPVIKERIKNKLIEIITDGQPVTKR---LQPKFDWRDHS 207          
BLAST of NO10G03390 vs. NCBI_GenBank
Match: CBN73980.1 (eukaryotic translation initiation factor 4E-like 1 [Ectocarpus siliculosus])

HSP 1 Score: 137.9 bits (346), Expect = 4.700e-29
Identity = 75/208 (36.06%), Postives = 118/208 (56.73%), Query Frame = 0
Query:    7 SSGGPEVEHPLQQPWQLYLHYPTITQSLESYGKEAYQALCEFSTVEGFWAYFHFLPRPSDIFTEVVAGSYPPQLLKRKLDGKNLEAFGLFKKGVKPEWEDPLNMQGGHWECRREPAFDLPTLDKMWRTTVMALIGETLEDGNAITGARVVDKSRNKRPEYRLEIWTAVKEERVNEG-IRMKLIEALKEGLGEGGRDGGKIPEFVWKEH 214
            ++G  E  HPLQ  W ++ H   + +S   +G ++ Q+L EF+TVE FW  ++ +P+PS +  +   GS     +++K+  + ++++ +FKKG+KPEWE P N  GG W+ R +       LD  W   V+ L+GET++ G+ I GARVVDKS+N    YR E+W      R N+G    +L+E L+  L +       +P F WK H
Sbjct:    2 ANGSAEQLHPLQNTWCIWEH--KVAKSSADWG-DSMQSLAEFATVEDFWKVYNNVPKPSQVMFD---GS-----MRKKVGDRVIDSYSIFKKGIKPEWEAPENSHGGEWQSRSK--MTPQALDLFWENMVLGLVGETVDVGDEICGARVVDKSKNNHNVYRFELWL-----RSNDGNTAARLLERLRACLADRNLHEKLMPSFDWKAH 191          
BLAST of NO10G03390 vs. NCBI_GenBank
Match: GBG26563.1 (Eukaryotic translation initiation factor 4E [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 137.5 bits (345), Expect = 6.100e-29
Identity = 81/218 (37.16%), Postives = 121/218 (55.50%), Query Frame = 0
Query:   15 HPLQQPWQLYLHYPTITQSLESYGKEAYQALCEFSTVEGFWAYFHFLPRPSDIFTEVVAGSYPPQLLKRKLDGKNLEAFGLFKKGVKPEWEDPLNMQGGHWECRREPAFDLPTLDKMWRTTVMALIGETLEDGNAITGARVVDKSRNKRPEYRLEIWTAVKEERVNEGIRMKLIEALKEGLGEGGRDGGKIPEFVWKEHSQIVNT----GLEGYGGST 229
            HPLQ  W  + H    T S   YG + +Q L EF TVE FW + + LP+PS++F       Y PQ   +K   + ++ F +FK G++PEWED  NM GG + CR+  A     LD  W   ++ L+GET+++G+ I G RVVDKS++ RP YRLE+W   +++ V E +R ++ + L   L         + E++  EH+  +NT      +G  GST
Sbjct:   11 HPLQNTWAFWEHRKGGTGS--DYGSKMFQ-LGEFETVEDFWRFKNNLPQPSEVF-------YTPQSGHKKFVDREIDGFSMFKGGIRPEWEDKANMYGGEFFCRQTMA--PAQLDNAWEKLLLGLVGETIDNGDEICGVRVVDKSKSNRPTYRLEMWFRSRDKDVLEHLRTQVQKCLGANL---------LKEYM--EHNVAMNTHGAGAPKGRSGST 205          
BLAST of NO10G03390 vs. NCBI_GenBank
Match: XP_002178545.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC50210.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 135.2 bits (339), Expect = 3.000e-28
Identity = 77/207 (37.20%), Postives = 115/207 (55.56%), Query Frame = 0
Query:   14 EHPLQQPWQLYLHYPT-ITQSLESYGKEAYQALCEFSTVEGFWAYFHFLPRPSDIFTEVVAGSYPPQLLKRKLDGKNLEAFGLFKKGVKPEWEDPLNMQGGHWECRREPAFDLPTLDKMWRTTVMALIGETLEDG-----NAITGARVVDKSRNKRPEYRLEIWTAVKEERVNEGIRMKLIEALKEGLGEGGRDGGKIPEFVWKEHS 215
            ++PLQ  W L+ H          +  KE  QALC F TVE FW YF+ +P+PS +F +           K   +GK +E + LFK+G++PEW DP N+ GG + CR    F+   LD  W+  V AL+GET+ED      + + G RVVDKSR   P ++LE+W   ++  + E ++  L++ + E  G+     G+ P+F WK+HS
Sbjct:    8 DNPLQNEWVLWEHKAAGAGNKNPNQWKENMQALCSFRTVEDFWQYFNHIPKPSQVFFDGECRK------KVGPEGKTIEEYSLFKEGIEPEWGDPKNVIGGEFFCR--AYFEADILDLYWQNLVFALVGETIEDALGGKQDCVNGVRVVDKSRG-YPMFKLELWVNTRDPILKEKMKDLLLDLMTE--GQPASIKGR-PKFEWKDHS 202          
BLAST of NO10G03390 vs. NCBI_GenBank
Match: OQR98512.1 (hypothetical protein ACHHYP_08439 [Achlya hypogyna])

HSP 1 Score: 130.2 bits (326), Expect = 9.800e-27
Identity = 64/201 (31.84%), Postives = 111/201 (55.22%), Query Frame = 0
Query:   15 HPLQQPWQLYLHYPTITQSLESYGKEAYQALCEFSTVEGFWAYFHFLPRPSDIFTEVVAGSYPPQLLKRKLDGKNLEAFGLFKKGVKPEWEDPLNMQGGHWE--CRREPAFDLPTLDKMWRTTVMALIGETLEDGNAITGARVVDKSRNKRPEYRLEIWTAVKEERVNEGIRMKLIEALKEGLGEGGRDGGKIPEFVWKEH 214
            HPLQ  W ++     + +S +    +    LC FS+VE FW Y++ +P+PS +  + +A        K+K   +++++F +FK+G++PEWED  NM GG W+   R +P      LD++W   V+ +IGET++  N ITGARVV K++     YR E+W   ++  + + IR  ++  + +   +G      + +  +KEH
Sbjct:    6 HPLQSAWSIW----ELRESTKGNYGDNLHRLCTFSSVEEFWGYWNNIPKPSQVLNDGIA--------KKKFSDRSVQSFAVFKEGIRPEWEDSANMNGGEWQLSIRLQPG----PLDELWDKVVLGMIGETIDPTNEITGARVVHKNKKDTHTYRFELWLRSRDRNLADEIRKNMVACMNQ---DGSSQKVVVSDCSYKEH 187          
BLAST of NO10G03390 vs. NCBI_GenBank
Match: XP_005768015.1 (hypothetical protein EMIHUDRAFT_470522 [Emiliania huxleyi CCMP1516] >EOD15586.1 hypothetical protein EMIHUDRAFT_470522 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 129.8 bits (325), Expect = 1.300e-26
Identity = 64/146 (43.84%), Postives = 92/146 (63.01%), Query Frame = 0
Query:   49 STVEGFWAYFHFLPRPSDIFTEVVAGSYPPQLLKRKLDGKNLEAFGLFKKGVKPEWEDPLNMQGGHWECRREPAFDLPTLDKMWRTTVMALIGETLEDGNAITGARVVDKSRNKRPEYRLEIWTAVKEERVNEGIRMKLIEALKEG 195
            +TVE FW  ++ +P+PS+IF +           ++K   + +EAF +FKK +KPEWEDP N  G  W CRR  AF +P LD+ W   V+ +IGETL+ G+ I GARVVDKS N R  YRLE+W    ++ +++ +  K+ EAL +G
Sbjct:  463 ATVEDFWRAWNNIPKPSEIFYD--------GRTRKKFASRTVEAFSVFKKNIKPEWEDPANRSGAEWYCRR--AFTMPQLDEFWLHIVLGMIGETLDAGDEICGARVVDKSVNGRTMYRLELWFRKNDDALSKELLAKMQEALGKG 598          
BLAST of NO10G03390 vs. NCBI_GenBank
Match: XP_012194421.1 (hypothetical protein SPRG_00815 [Saprolegnia parasitica CBS 223.65] >KDO34754.1 hypothetical protein SPRG_00815 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 125.2 bits (313), Expect = 3.100e-25
Identity = 59/183 (32.24%), Postives = 103/183 (56.28%), Query Frame = 0
Query:   11 PEVEHPLQQPWQLYLHYPTITQSLESYGKEAYQALCEFSTVEGFWAYFHFLPRPSDIFTEVVAGSYPPQLLKRKLDGKNLEAFGLFKKGVKPEWEDPLNMQGGHWECRREPAFDLPTLDKMWRTTVMALIGETLEDGNAITGARVVDKSRNKRPEYRLEIWTAVKEERVNEGIRMKLIEALKE 194
            P   H L+  W ++        S  +YG+  ++ LC FSTVE FW Y++ +P+PS +  + V        +K+K   +++++F +FK+G++PEWED  NM GG W+   +       LD++W   V+ +IGET++  N +TGARVV K++     YR E+W   ++  + + IR  ++  + +
Sbjct:    5 PTETHALESAWSIW-ELRDSGSSKSNYGENLHR-LCTFSTVEEFWGYWNNIPKPSQVLNDGV--------VKKKFTDRSVQSFAVFKEGIRPEWEDSANMSGGEWQLSIK--LQAGPLDELWDKLVLGMIGETIDPTNEVTGARVVHKNKKDSHSYRFELWLRSRDRNLADEIRKNMVACMNQ 175          
BLAST of NO10G03390 vs. NCBI_GenBank
Match: XP_008605222.1 (hypothetical protein SDRG_01475 [Saprolegnia diclina VS20] >EQC41508.1 hypothetical protein SDRG_01475 [Saprolegnia diclina VS20])

HSP 1 Score: 124.8 bits (312), Expect = 4.100e-25
Identity = 59/183 (32.24%), Postives = 101/183 (55.19%), Query Frame = 0
Query:   11 PEVEHPLQQPWQLYLHYPTITQSLESYGKEAYQALCEFSTVEGFWAYFHFLPRPSDIFTEVVAGSYPPQLLKRKLDGKNLEAFGLFKKGVKPEWEDPLNMQGGHWECRREPAFDLPTLDKMWRTTVMALIGETLEDGNAITGARVVDKSRNKRPEYRLEIWTAVKEERVNEGIRMKLIEALKE 194
            P   H L+  W ++     + +S +S   E    LC FS VE FW Y++ +P+PS +  + V        +K+K   +++++F +FK+G++PEWED  NM GG W+   +       LD++W   V+ +IGET++  N +TGARVV K++     YR E+W   ++  + + IR  ++  L +
Sbjct:    5 PTETHALESAWSIW----ELRESSKSNYGENLHRLCTFSNVEEFWGYWNNIPKPSQVLNDGV--------VKKKFTDRSVQSFAVFKEGIRPEWEDSANMSGGEWQLSIK--LQAGPLDELWDKLVLGMIGETIDPTNEVTGARVVHKNKKDSHSYRFELWLRSRDRNLADEIRKNMVACLNQ 173          
The following BLAST results are available for this feature:
BLAST of NO10G03390 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25557.18.700e-8465.25eukaryotic translation initiation factor 4e [Nanno... [more]
XP_005761801.11.200e-2940.54hypothetical protein EMIHUDRAFT_414699 [Emiliania ... [more]
OEU14111.12.100e-2937.73translation initiation factor eIF4e [Fragilariopsi... [more]
CBN73980.14.700e-2936.06eukaryotic translation initiation factor 4E-like 1... [more]
GBG26563.16.100e-2937.16Eukaryotic translation initiation factor 4E [Auran... [more]
XP_002178545.13.000e-2837.20predicted protein [Phaeodactylum tricornutum CCAP ... [more]
OQR98512.19.800e-2731.84hypothetical protein ACHHYP_08439 [Achlya hypogyna... [more]
XP_005768015.11.300e-2643.84hypothetical protein EMIHUDRAFT_470522 [Emiliania ... [more]
XP_012194421.13.100e-2532.24hypothetical protein SPRG_00815 [Saprolegnia paras... [more]
XP_008605222.14.100e-2532.24hypothetical protein SDRG_01475 [Saprolegnia dicli... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001215NSK001215Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G03390.1NO10G03390.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|553991gene_3856Nannochloropsis oceanica (N. oceanica CCMP1779)gene
EIF4Egene4949Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G03390.1NO10G03390.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G03390 ID=NO10G03390|Name=NO10G03390|organism=Nannochloropsis oceanica|type=gene|length=1065bp
ACAGGCTAGCTACCGGTAGGAGCGCCGGACAGGACAAGCGAGACAGACGT
CATACGAAGTGCGCTATAAAAGGATGGAGAACGGCACAAGCAGCAGCGGT
GGTCCCGAAGTTGAGCACCCTCTCCAGCAGCCTTGGCAGCTCTACCTCCA
CTATCCGACTATAACGCAGTCCCTGGAAAGTTATGGCAAGGAAGCGTACC
AAGCATTGTGCGAGTTCTCGACGGTGGAGGGGTTTTGGGCCTACTTTCAT
TTCTTGCCCAGGCCCAGTGATATCTTCACTGAGGTGGTTGCAGGCAGCTA
CCCACCCCAGTTGCTGAAGCGGAAGTTAGACGGGAAGAATTTGGAGGCGT
TTGGATTGTTTAAGAAGgtgcgtttgattcctttccggagggtgggagag
aggggaggaaggtgtggtggtaattgtgcttgggtgaggagaaagaaaga
gaatagtgtgtaggtttgtctagggggaggagtcgagagggggcactcat
ctgctcttcattccacccacctctccccattcccccctccacatctcagG
GTGTCAAACCTGAATGGGAAGACCCACTTAACATGCAAGGCGGTCACTGG
GAGTGTCGTCGTGAGCCGGCTTTCGACCTCCCTACCCTTGATAAAATGTG
GCGCACGACTGTCATGGCCTTGATAGGTGAGACTTTGGAGGACGGAAATG
CCATCACCGGTGCAAGGGTGGTGGATAAGAGTAGGAATAAGCGGCCGGAG
TATCGCCTGGAAATTTGGACGGCTGTGAAGGAAGAGAGAGTGAACGAGGG
AATTCGGATGAAGTTGATTGAGGCCCTGAAGGAGGGCCTAGGAGAGGGGG
GAAGGGACGGAGGGAAGATCCCTGAGTTCGTTTGGAAGGAGCACAGTCAA
ATTGTGAATACAGGTCTGGAGGGATACGGGGGGTCGACGGTGAGCTTGAG
TGGTAGTGCAGGCGGAGGCGGCGGCGGCGGAGGAGGGGGGGGAGGTAAGG
CGGGAGGGTTGGGGTCGGCATCGGGGGTTATCAGGGACAAGGTTATGGGC
GCGCTGAGTTCATGA
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protein sequence of NO10G03390.1

>NO10G03390.1-protein ID=NO10G03390.1-protein|Name=NO10G03390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=270bp
MENGTSSSGGPEVEHPLQQPWQLYLHYPTITQSLESYGKEAYQALCEFST
VEGFWAYFHFLPRPSDIFTEVVAGSYPPQLLKRKLDGKNLEAFGLFKKGV
KPEWEDPLNMQGGHWECRREPAFDLPTLDKMWRTTVMALIGETLEDGNAI
TGARVVDKSRNKRPEYRLEIWTAVKEERVNEGIRMKLIEALKEGLGEGGR
DGGKIPEFVWKEHSQIVNTGLEGYGGSTVSLSGSAGGGGGGGGGGGGKAG
GLGSASGVIRDKVMGALSS*
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Synonyms
Publications