NO10G03370, NO10G03370 (gene) Nannochloropsis oceanica

Overview
NameNO10G03370
Unique NameNO10G03370
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2817
Alignment locationchr10:950778..953594 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:950778..953594 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO10G03370 vs. NCBI_GenBank
Match: EWM25545.1 (hypothetical protein Naga_100130g15, partial [Nannochloropsis gaditana])

HSP 1 Score: 290.0 bits (741), Expect = 2.200e-74
Identity = 264/555 (47.57%), Postives = 309/555 (55.68%), Query Frame = 0 
Query:  265 LAPSLPPYVFVTFLDDTTVPASLPAS--PRNLKLFIGPLASDPVLWAAWGLPADAFPSFSAAVNDAPSSLDTHIAALLPSLPASALSFYNRGG--------XXXXXXXXXXXXXLPSPSLRPATSLEVLVASFATSSPSSCP---LPSLLDLLRARILPPSFWREYFSLPSFTQEEEVLQEAGREGGTGGGLTVVYDFLLSYLLSPSSPPFSSSYSTINKHWVEEALNNGLRIVLHPVFPLGLPPALPSRGVSLQSLPPLVAEEYGXXXXXXXXXXXXXXXSNFVFDEADLEGLFEEGSLKEEFHSFPPWSLPFAHVGGKQLALMQLARHR---XXXXXXXXXXXXXXXXXXXXRALRMRRVKYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLFPYHYPGRPAPVGKELPDRGRHKCRVPGCSDDYRWPDYKCKAHGGGRCQFMWWRREGVGEGG----------MEACPKFHQSKNSRGELLCGEHCRLTGAVYGEVSRRGGKAAKGAGGLKKGKRTAKKK 794
            L PSL P VFVTF  D   P +LP+S  PR+LKL++GPL+S   LW +WGLP  AF SF+ A++ +P SLDTH+ ALLP LP  AL  Y+  G                     LPS SLRP  SL+V V S        CP   LPSLLDLL+ + L PSFWR++F L S   +E+VLQEAGREGG   GL  VY+FLLSYLL     P SSS     KHW EEAL +GLRI L+                     PP   EE G                              + S+ ++  +F   +       GK+ A ++ AR        XXXXXXXXXXXXXXXXX                                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX L    YPGRP P+G  LPDRGRH CR+ GC ++YRWPDY+CK HGGGRCQ++WW R G GEGG          + ACPKFHQSKNS+GELLCGEHCRLTGAVYGEVSR+ GK   G  G+KKGK+   K+
Sbjct:    2 LPPSLLPDVFVTFKYDQ--PDALPSSTPPRHLKLYLGPLSSSLGLWESWGLPVHAFASFAQALHASPYSLDTHLTALLPLLPPLALCTYDPCGAGVDQGFREGEREGGRARLWTLPSLSLRPTASLDVRVTSL------PCPPSLLPSLLDLLKNQDLSPSFWRDHFLL-SGAGQEKVLQEAGREGGREEGLRAVYEFLLSYLL-----PSSSSC----KHWTEEALVDGLRITLY---------------------PPGGGEEGG------------------------------QASVGKDTGTFTCAAGVGKGGKGKEWATIRRARGEEVVGFVXXXXXXXXXXXXXXXXXXXXXXXXXXXTSRATTPDDGGDNQGHKMPTRRSQEQGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLLTDAYPGRPEPLGLHLPDRGRHVCRIAGCGNEYRWPDYQCKLHGGGRCQYLWWLR-GRGEGGRGEGPDGVGLVLACPKFHQSKNSKGELLCGEHCRLTGAVYGEVSRK-GKGRGGEAGVKKGKKMKTKE 485
[Close]
BLAST of NO10G03370 vs. NCBI_GenBank
Match: EWM21503.1 (hypothetical protein Naga_100019g37 [Nannochloropsis gaditana])

HSP 1 Score: 81.6 bits (200), Expect = 1.200e-11
Identity = 45/107 (42.06%), Postives = 53/107 (49.53%), Query Frame = 0 
Query:  687 GKELPDRGRHKCRVPGCSDDYRWPDYKCKAHGGGRCQFMWWRREGVGEGGMEACPKFHQSKNSRGELLCGEHCRLTGAVYGEVSRRGGKAAKGAGGLKKGKRTAKKK 794
            G  LP  GR  CRV  C  + RWPDY C  HGGGRC++             E C  FHQ  NS G LLCG+HC+  GA Y        K  +G GG   G  T K++
Sbjct:  393 GDHLPYNGRKICRVKNCDGNQRWPDYLCGQHGGGRCRW-------------EGCSLFHQGINSMGLLLCGKHCKAVGATYRRPRPAAQKTERGNGG-GFGSTTRKRR 485
The following BLAST results are available for this feature:
BLAST of NO10G03370 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM25545.12.200e-7447.57hypothetical protein Naga_100130g15, partial [Nann... [more]
EWM21503.11.200e-1142.06hypothetical protein Naga_100019g37 [Nannochlorops... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001212NSK001212Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G03370.1NO10G03370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585634gene_3859Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100130g15gene4952Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G03370.1NO10G03370.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G03370 ID=NO10G03370|Name=NO10G03370|organism=Nannochloropsis oceanica|type=gene|length=2817bp
ATGTTCGTCGCCACATCGAGCTCGTCGCTGTCCTCGGCCTCGCGACGTCG
CATGGAGAAGAAACTCAAGACCGTCAGCGGCGGCAGTAGCGGCGGCGCTC
ACCGCGGCACCAGCACAAGCAGCTGCAGCCACAGCTGCAGTGGCGGCGGT
GGTGGTGGAGGACAAGGTATTACCCCATCATTTCCGACATGGGAGGAGAT
GGTGCCAGCCTGGGACCCACAAGCGTTGGTGGGGGTTGAGACACGAACCC
CTCCTTTGGACTCCACGGGGCCTGTAGTGACAGTGACGGCATTGGTAAAT
GCCTTGACCGCCTTACAACGACGCCAGCAGGAGCAGCAGGAGGAGGGCCA
GAATGGGGACGTTGAAGACCCGTTTCCTGATTTTCTGAACGAGGGCTTGC
GGTCTCGGTCGTCATCGGTGTCGTCGCTGGTGTCGCCGAATTGTGGCGCT
GCTGCGACTGCTGCTGCTGTTACTGGAGCTCCAGCTGCTGCAGCTGCTGC
GACTGTTGTTACTGGAGCCACTGCTTTCCCCCCCCTTGGCTCGGTGGTGT
CAGCGGAAGTGGAAGAAGGCAAAGGGGAAGGGACTCTGACTCCAAATATG
TTTGCAAGGAGCAGTAGTTGCATGTCCTTCTTGCCTCTCTCCCCCTTTGA
CCGTATGGGAAGTGATGAGGAAAAGGATGAAGAGGGGGAGGAAGGGGTAG
AGGAAGTAGCGGCCAGACAGTTGCCCGCATTAGCCTCGGCTACCAACACG
CTTGCAGCCACTTTCACGCAAGAACATGGCGCCCACCCTTTTCTCGCTCC
CTCGCTCCCCCCCTACGTGTTCGTCACCTTCCTCGATGACACCACCGTCC
CCGCCTCCCTCCCTGCCTCCCCACGAAACTTGAAGCTCTTCATCGGCCCT
CTTGCAAGCGACCCGGTGTTATGGGCTGCCTGGGGTTTGCCTGCTGATGC
CTTCCCCTCGTTCTCCGCTGCAGTCAACGACGCGCCTTCCTCCCTCGATA
CCCACATTGCCGCCCTCCTTCCCTCCCTCCCTGCCTCGGCCCTGTCGTTC
TACAATAGAGGAGGAGGGGAAGGAAGCGGAGGAGGAGCGGTGCTACTTCT
CACCCTCCCCTCACCCTCCCTCCGCCCTGCTACCAGCCTTGAAGTCCTGG
TGGCATCGTTTGCAACGTCCTCCCCCTCTTCCTGCCCCCTCCCCTCTCTG
CTGGACCTCCTGAGGGCTCGCATCCTCCCTCCTTCCTTCTGGCGCGAATA
CTTCTCCCTCCCCTCCTTCACTCAAGAAGAAGAAGTCTTACAGGAGGCAG
GCAGGGAGGGAGGGACTGGGGGAGGGCTGACGGTCGTGTACGACTTTCTC
CTTTCCTACCTCCTGTCCCCCTCCTCCCCTCCCTTCTCCTCCTCCTATTC
CACCATCAACAAGCACTGGGTTGAAGAGGCATTAAACAACGGATTGCGTA
TCGTCCTTCACCCCGTCTTCCCCCTTGGCCTTCCCCCCGCCCTCCCTAGC
CGAGGCGTCTCGCTCCAATCGTTGCCTCCCTTGGTGGCGGAGGAGTATGG
GAGGGAGGAAGGGAGGAAGGGAGGGAGGGAGGGAGGGAGGGGGTCAAGTA
ACTTTGTTTTTGACGAGGCGGACCTCGAAGGATTGTTTGAGGAAGGGTCA
CTTAAGGAAGAGTTTCATTCCTTCCCTCCCTGGTCCCTTCCTTTCGCCCA
TGTGGGAGGAAAGCAACTGGCTCTTATGCAGCTGGCGCGGCATAGAGGAG
GAGGAGGGGGGGAGGAGGAGATGGAGGAAGGGGAGAAGGGCACGGGACAG
AGCGGCCGTGCCCTTCGTATGCGCCGCGTGAAATACTACGATTGCGAAGA
TGACAAAGGCGAGGAAGAGGAAGAGGAAGAGGGAGGGGTGGAGGAAGGGC
TCACCAAGACGAGCCATTCTAGCACCACCACTTCCACCTTCCCATCCTTC
TCGTCTTCTTCCTCCTCTTCCCCCTCCTCCTTCTTCTCCTGCGCTTCCTC
CTCCACTGCTAACACCACTCTCTTCCCTTACCACTACCCCGGCCGTCCGG
CGCCCGTTGGAAAGGAGCTTCCCGATCGAGGGAGGCACAAGTGCCGTGTT
CCAGGGTGCTCAGATGATTACCGGTGGCCCGACTACAAGTGCAAGGCGCA
CGGTGGAGGCCGCTGTCAATTTATGTGGTGGAGGAGGGAAGGAGTGGGAG
AGGGAGGGATGGAGGCGTGCCCGAAGTTCCATCAATCCAAGAATTCGCGT
GGGGAATTACTGTGTGGTGAACATTGTCGTCTGACGGGAGCCGTCTATGG
CGAGGTGTCAAGGAGAGGGGGGAAGGCGGCAAAAGGGGCGGGGGGATTAA
AAAAAGGGAAGAGAACGGCGAAAAAAAAAGTCTGGGGTTGAGATGAGTAG
GCACATACATACAAACAGGGCGAAACGGAAAGAGTCGGAGGACGGGAAGG
AGGAAGAGGGGAATAGCGAAAGGCGTAGAGCAAGCTTGACGAGGAAAACT
ACCTAGTGTAAGAAAGTAATAGACATAATTGTTGTGGATGTAAGTGGTAA
CGACCTAGTTCAAGATCGAGTCAAAACGAGAAAGAAGAAGAAGGAAGAAA
AGGGAAGGAAAAGAAAAGACTGGAAATTGAAGCCTATATTTACAACTTAA
AATTGAGGAAGACGACGAGTCGAAGGCAAGACACTCACAATGTAAGAGAA
ACGAAGAAATAAGAAATGGGAGAGCAGCTTAAAATGAAGAATGAAGAGTA
AAGCAGGCGTGTTGATTGTCTGTGGACAAGCAAAATACAATGCGCGTCGT
TTTTTGTTTTTTCTTCT
back to top

protein sequence of NO10G03370.1

>NO10G03370.1-protein ID=NO10G03370.1-protein|Name=NO10G03370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=797bp
MFVATSSSSLSSASRRRMEKKLKTVSGGSSGGAHRGTSTSSCSHSCSGGG
GGGGQGITPSFPTWEEMVPAWDPQALVGVETRTPPLDSTGPVVTVTALVN
ALTALQRRQQEQQEEGQNGDVEDPFPDFLNEGLRSRSSSVSSLVSPNCGA
AATAAAVTGAPAAAAAATVVTGATAFPPLGSVVSAEVEEGKGEGTLTPNM
FARSSSCMSFLPLSPFDRMGSDEEKDEEGEEGVEEVAARQLPALASATNT
LAATFTQEHGAHPFLAPSLPPYVFVTFLDDTTVPASLPASPRNLKLFIGP
LASDPVLWAAWGLPADAFPSFSAAVNDAPSSLDTHIAALLPSLPASALSF
YNRGGGEGSGGGAVLLLTLPSPSLRPATSLEVLVASFATSSPSSCPLPSL
LDLLRARILPPSFWREYFSLPSFTQEEEVLQEAGREGGTGGGLTVVYDFL
LSYLLSPSSPPFSSSYSTINKHWVEEALNNGLRIVLHPVFPLGLPPALPS
RGVSLQSLPPLVAEEYGREEGRKGGREGGRGSSNFVFDEADLEGLFEEGS
LKEEFHSFPPWSLPFAHVGGKQLALMQLARHRGGGGGEEEMEEGEKGTGQ
SGRALRMRRVKYYDCEDDKGEEEEEEEGGVEEGLTKTSHSSTTTSTFPSF
SSSSSSSPSSFFSCASSSTANTTLFPYHYPGRPAPVGKELPDRGRHKCRV
PGCSDDYRWPDYKCKAHGGGRCQFMWWRREGVGEGGMEACPKFHQSKNSR
GELLCGEHCRLTGAVYGEVSRRGGKAAKGAGGLKKGKRTAKKKVWG*
back to top
Synonyms
Publications