NO10G03180, NO10G03180 (gene) Nannochloropsis oceanica

Overview
NameNO10G03180
Unique NameNO10G03180
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2899
Alignment locationchr10:895420..898318 +

Link to JBrowse

Properties
Property NameValue
DescriptionRan binding domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:895420..898318 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005643nuclear pore
GO:0005643nuclear pore
Vocabulary: Biological Process
TermDefinition
GO:0046907intracellular transport
GO:0046907intracellular transport
Vocabulary: INTERPRO
TermDefinition
IPR015007NUP2/50/61
IPR000156Ran_bind_dom
Homology
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BLAST of NO10G03180 vs. NCBI_GenBank
Match: EWM25542.1 (Ran binding domain protein [Nannochloropsis gaditana])

HSP 1 Score: 199.1 bits (505), Expect = 4.300e-47
Identity = 234/713 (32.82%), Postives = 298/713 (41.80%), Query Frame = 0 
Query:    1 MKRGNDRGHLGKDEYNRAVEEEDDMDDIGSGTYRKADESVLKTRKIIKASRRFSGGHGAIGDDYLSPAAVSTGGEPPKTNNPFRGFSFMKPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFNVDNXXXXXXXXXXXXISPSFSSIPSAPRDPFAPSTTFLSHQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPTPRPTGFGAAALGGS---GDERGGKERPSLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCNSVNNYNHTLPLSLPVTPPLT----EEEEREGEMGVEEENK---KEGKRRIEQNPYSVWVEGVRDYVNFAKSLESKYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPSLPAFPNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPFSFKPQTLNFGNPAATPSASNSTFHSLPAFASATHAAAPPAPTEPTAG-----------------------EXXXXXEEEDAMPLLAPDKAVKQGKDPNEVFEKDPVRVYRLDKENKTWVDMGKGSLGLYRDTAARKQWMAVRNITGKVVLSCGLSSQMNFSAMDQSSSVVFACKPVFDGTPAKDMMTLRIKVRDGVQEVVAKLNSLKDGK 681
            MKR N+RG L K+EY R  +EE+  +  G+ T+RKADESVLKTRKI+KASRRFSGG G++       +A + G + P  +NPF GFSF K  XXXXXXXXXXXXXXXXXXXXXXXX            E+                                     F+ D                + +S+ S+  DPF P  +  +                                  P+   +G  A A   S     + GG+ + SL                                     +      L     P L     +      +  + + N+       ++I++NP+SVWVEGVRDYV FA+++  KYG                                                                   P+  A                                             P + + Q    G  A  P    ++F S P   ++  A +  A  E   G                        XXXXX     MPLLAPDKAVKQ KDP+EVFEKDPVRVYRLDKE+KTWVDMGKGSLGLYRD AA+KQW+AVRNITGKVVLSC L+  M+FS M+++SSV FACKPV D T A++MMTLRIKV+DG+ E+V K+N LKDGK
Sbjct:    1 MKRSNERGQLSKEEYER--DEEEYGEGGGADTFRKADESVLKTRKIVKASRRFSGGEGSLSS--AGSSAPARGSQLP-ASNPFAGFSFAKXXXXXXXXXXXXXXXXXXXXXXXXXXPSSSLSMGARPSEN------------------------------------AFSADAPSFPSSLGLQNGQGSTKASL-SSLADPFTPLASSSASSSSWKPPSMQGPLFSSFPHADAPNPSPWSTAAQPSSASSGLPALAPRSSVPAAGDGGGRLKGSLGSTGPPLAREEGDHGEGRRLQGEHEHRPFQAGQLEPAHPRPQSGLGQAKDPCLNGGGRQRIPHSYKTRMTQLNRGFAAWASQQIQENPFSVWVEGVRDYVKFAQAIAFKYGEGSEG--------------------------------------------------------------PTWVA---------------------------------------------PHAAQEQPQQAGRLAPPP----TSFRSAPVLPTSFDATS-NAEAEGRKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPLLAPDKAVKQKKDPHEVFEKDPVRVYRLDKESKTWVDMGKGSLGLYRDPAAKKQWLAVRNITGKVVLSCALTPPMSFSTMEKASSVAFACKPVLDTTAAQEMMTLRIKVKDGLGELVKKMNELKDGK 559
The following BLAST results are available for this feature:
BLAST of NO10G03180 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25542.14.300e-4732.82Ran binding domain protein [Nannochloropsis gadita... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001195NSK001195Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G03180.1NO10G03180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|565124gene_3879Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100232g6gene4967Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G03180.1NO10G03180.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G03180 ID=NO10G03180|Name=NO10G03180|organism=Nannochloropsis oceanica|type=gene|length=2899bp
ATGAAGCGCGGGAACGACAGAGGGCACCTGGGCAAGGACGAATACAACCG
CGCAGTTGAAGAGGAGGATGACATGGATGACATTGGCTCGGGCACATATA
GGAAGGCCGATGAGAGgtgagggatcaagggacggcgggattggggataa
gagggaataaagctcatgtccctccagtacgctacaaaggctgaataatg
ccccgcttttctttaagtaaatgattgaagcgttccgttgacgaagcact
catcctctatctacttcaaagtttcccccaacccatcctctcatcacata
ccccgacctaaaccatcctttcacacacacaactcacagCGTTCTGAAAA
CCCGCAAGATCATTAAGGCCTCCCGTCGTTTTTCTGGCGGCCACGGGGCT
ATCGGCGATGACTATCTTTCTCCCGCTGCGGTATCTACCGGTGGTGAGCC
ACCCAAAACCAACAACCCCTTCCGAGGTTTCAGTTTCATGAAGCCCAACA
GCAGCAGCAACAGCAGCAACAGCAGCAACAGCAACGACCATGACCGCAGC
AGTAGTAGCAGCAGCAGCAGCAGCAATGGCAATGGTAACAGCACCAGCTA
TGGAATAGAGTCAACGGCGTCCTCCTTTCCTTCTTCGTCTTCGACTGGCA
AGCTCCCTGTCTCCTTTCCTCCGCTGTCCTCCACCTCGACAACCTTCCCT
TCTTCCTCCTCTTCCTCCTCGATGTTCAATGTGGACAATGACGGAAAAGG
CGACAGCAACAGCAACAATAAAAATATCAGCCCGTCCTTCTCTTCCATCC
CATCTGCCCCACGGGATCCCTTCGCCCCTTCGACCACCTTTCTCTCCCAC
CAGTCCTCCTCCTTGTCCTCCTCCTGGAAGCCTCCGTCCAGCTCCCTGTT
TACCACGTCTTCGTCATCCTTGAGCAGCAACCAGCCACCACTACCTGACC
CTACTCCCCGCCCTACCGGTTTTGGTGCAGCAGCGTTAGGTGGTAGTGGG
GATGAACGAGGAGGGAAAGAAAGGCCGTCACTCTCCTCTAGCTACCGGGC
CACTTCTTTAGCTTCTCCTCCCACGTCTTCCTTTGGTGGCTATGGTGCGG
GCGGAGGTGGGGGGAATATGGTCAGCAGCTGCAACAGCGTCAACAACTAC
AACCACACCCTCCCCCTCTCCCTTCCCGTGACTCCGCCTTTAACGGAGGA
GGAAGAGAGGGAGGGAGAGATGGGAGTAGAAGAGGAGAACAAGAAGGAGG
GCAAGAGGAGAgtaagaaggccaagcatacggctaggatgaccgcgttga
ataagggctttgcttcgtgggtgtcccagcagATCGAACAAAACCCGTAC
TCAGTCTGGGTGGAGGGGGTGCGCGACTACGTGAACTTTGCTAAGAGTCT
CGAGAGCAAATACGGGGGTGGTGATGATAAATCTTCCTCCCTCCCTCCCT
CGTCTTCGATGCTGGCGGCCAAGTCGAGTGGAATGGCAGCACCCCGACCA
CCACCTCCGAAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACA
ACAAAAACAACAGCAACAGGAACAACATCGAGCGCCCGCATCTTCATTCT
CTTCTTCCTCTGGCGTCCCTTCCCTCCCTGCTTTCCCCAACCCGTCCCTC
GGAGGCGGAGGAGTGGGAGGGGCAGGAGGTGCAAGCGCTTACCCTCTTTT
TGGGGCAGTGCACTTACCAGTAAGCAGCAGCAGTAGCAGCAGTAGTGGTA
GTAGTATTAGCAGCACGCCTTTCTCCTTCAAGCCGCAGACATTGAACTTC
GGTAATCCTGCTGCTACTCCTTCCGCCTCTAACAGCACATTTCACTCTCT
CCCTGCCTTCGCTTCTGCCACACACGCTGCTGCTCCTCCTGCTCCCACCG
AACCGACCGCAGGCGAGGGGGAGGGAAGGGGGGAGGAAGAGGATGCGATG
CCGTTGCTGGCACCCGACAAGGCGGTGAAGCAGGGCAAAGACCCCAACGA
GGTGTTTGAAAAAGACCCGGTTCGCGTGTATAGACTGGATAAAGAGAACA
AAACGTGGGTGGATATGGGCAAGGGCTCGTTAGgtacgtcttggtgtctt
cattctcttattcttacgtgtttctagttgattgccatgtttgtcttttc
ccgtgtattgatggtcatgtgtatctttgtcatgcacacctaaggtcagg
gcacctcgtgttctaacccttctcacttttccctgcctgcttcctttccc
tctgcctccctccgtccctccctccttcagGGCTGTACCGCGACACGGCC
GCCAGAAAACAGTGGATGGCCGTCCGGAACATCACGGGCAAAGTCGTCTT
GTCCTGCGGGTTGAGCTCTCAAATGAATTTCAGCGCCATGGACCAATCTA
GCAGTGTGGTGTTTGCGTGCAAGCCGGTCTTTGACGGGACGCCTGCGAAG
GACATGATGACGTTGCGGATTAAGGTGCGGGATGGGGTACAGGAAGTAGT
GGCGAAGTTGAATTCTTTGAAAGACGGGAAATAGATAAATGGAATGAGGG
AGGGAGGGTGAGAAAGGACCTTGTGGCAGGGGAGTAGATACATTGGACGC
AAGACGCAAGTGACATGAAAACGACGACGTGTGAGTGGACGAAGCAGACG
ATAGGATGAAAACGGAGAACAGACCTGATTTAATCGCTGGATTATAAGAG
AAGAAAGGCAACGCTGTCCTCAGATGCACGTGTTGGGTTATTTTTCCTCG
TCATATACGTATCCCTGACTGCTTGTAGGGAAATGGATATTTGAAAAGAA
GATGTGGTAGAGCTGTAACGAGAAAGCTGTGATTTGTCTGAGATGAGAGA
AGGGAGGAGAATGCCTTTATTCGAGACTTATTGCGTATTTTTACGGACA
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protein sequence of NO10G03180.1

>NO10G03180.1-protein ID=NO10G03180.1-protein|Name=NO10G03180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=681bp
MKRGNDRGHLGKDEYNRAVEEEDDMDDIGSGTYRKADESVLKTRKIIKAS
RRFSGGHGAIGDDYLSPAAVSTGGEPPKTNNPFRGFSFMKPNSSSNSSNS
SNSNDHDRSSSSSSSSSNGNGNSTSYGIESTASSFPSSSSTGKLPVSFPP
LSSTSTTFPSSSSSSSMFNVDNDGKGDSNSNNKNISPSFSSIPSAPRDPF
APSTTFLSHQSSSLSSSWKPPSSSLFTTSSSSLSSNQPPLPDPTPRPTGF
GAAALGGSGDERGGKERPSLSSSYRATSLASPPTSSFGGYGAGGGGGNMV
SSCNSVNNYNHTLPLSLPVTPPLTEEEEREGEMGVEEENKKEGKRRIEQN
PYSVWVEGVRDYVNFAKSLESKYGGGDDKSSSLPPSSSMLAAKSSGMAAP
RPPPPKQQQQQQQQQQQQQQKQQQQEQHRAPASSFSSSSGVPSLPAFPNP
SLGGGGVGGAGGASAYPLFGAVHLPVSSSSSSSSGSSISSTPFSFKPQTL
NFGNPAATPSASNSTFHSLPAFASATHAAAPPAPTEPTAGEGEGRGEEED
AMPLLAPDKAVKQGKDPNEVFEKDPVRVYRLDKENKTWVDMGKGSLGLYR
DTAARKQWMAVRNITGKVVLSCGLSSQMNFSAMDQSSSVVFACKPVFDGT
PAKDMMTLRIKVRDGVQEVVAKLNSLKDGK*
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Synonyms
Publications