NO10G03070, NO10G03070 (gene) Nannochloropsis oceanica

Overview
NameNO10G03070
Unique NameNO10G03070
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length5485
Alignment locationchr10:850452..855936 -

Link to JBrowse

Properties
Property NameValue
DescriptionSplicing factor 3a subunit 2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:850452..855936 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR036236Znf_C2H2_sf
IPR029071Ubiquitin-rel_dom
IPR000690Znf_C2H2_matrin
IPR000626Ubiquitin-like
IPR031781SF3A2_dom
IPR003604Znf_U1
Homology
BLAST of NO10G03070 vs. NCBI_GenBank
Match: EWM25510.1 (splicing factor 3a subunit 2 [Nannochloropsis gaditana])

HSP 1 Score: 389.0 bits (998), Expect = 2.200e-104
Identity = 189/205 (92.20%), Postives = 198/205 (96.59%), Query Frame = 0
Query:  207 MSESLANADRRERLRKLALETIDLNKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQENLARRAAKEAKEQQYRPNKPTVVAARRVMKIGRPGYKVTKARDLSTRQRSLIFEIDYPQAEEDVQPRHRFMSAFEQRVDSTKDREWQYLLFACEPYETVGFKIPNVEIDKGEGRFSSSWDGKAKKFVLQLYFREKGAEGGG 412
            MSESLANADRRERLRKLALETIDLNKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQENLARRAA+EAKEQQYRPNKPT+VAARR+MKIGRPGYKVTKARDLSTRQRSLIFEIDYPQAEEDVQPRHRFMSAFEQRV+STK+REWQYLLFACEPYET+GFKIPNVEIDKGEGRF S WD KA+KF+LQLYFRE+G    G
Sbjct:    1 MSESLANADRRERLRKLALETIDLNKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQENLARRAAREAKEQQYRPNKPTMVAARRMMKIGRPGYKVTKARDLSTRQRSLIFEIDYPQAEEDVQPRHRFMSAFEQRVESTKEREWQYLLFACEPYETIGFKIPNVEIDKGEGRFLSQWDPKARKFLLQLYFRERGEGEAG 205          
BLAST of NO10G03070 vs. NCBI_GenBank
Match: CBN77971.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 358.6 bits (919), Expect = 3.200e-95
Identity = 179/279 (64.16%), Postives = 215/279 (77.06%), Query Frame = 0
Query:  128 IHNISKSRKSTVEKQEEECLKGIPAGLQRLTLGGRHLRDEQTLAESAVVGH-TTLHLLLPLPGGIDFQHRDGSKFGGGGQMSESLANADRRERLRKLALETIDLNKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQENLARRAAKEAKEQQYRPNKPTVVAARRVMKIGRPGYKVTKARDLSTRQRSLIFEIDYPQAEEDVQPRHRFMSAFEQRVDSTKDREWQYLLFACEPYETVGFKIPNVEIDKGEGRFSSSWDGKAKKFVLQLYFREK 406
            + ++   R ST+ +   E L G+P  LQRLT G R L       +   + H  T+ L L L GGIDFQHR+GSKFGGGG MSE  A  DRRERLRKLA ET+DLNKDPYFMRNHLG YECKLCLTLHNNEGNYLAHTQGKRHQ+NLARRAA EAK    +P     V  R V+KIGRPGYKVTKARDLS+ QRSL+FE+DYP+AE+  QPRHRFMSA+EQ+V++  D+ +QYLLFAC+PYET+GFK+PN++IDK EGRF ++W+ +AKKF LQLYF ++
Sbjct:   17 VSSLRDYRVSTL-RSAVEGLSGVPPHLQRLTSGARDLASPSASLDDYGIEHGCTVRLSLRLLGGIDFQHREGSKFGGGGVMSEGQAAVDRRERLRKLAQETVDLNKDPYFMRNHLGKYECKLCLTLHNNEGNYLAHTQGKRHQQNLARRAAMEAKNALVKPQPAITVQTRNVIKIGRPGYKVTKARDLSSNQRSLLFEVDYPEAEDGAQPRHRFMSAYEQKVEA-PDKGYQYLLFACDPYETIGFKVPNLKIDKQEGRFFTNWEKEAKKFTLQLYFEDE 293          
BLAST of NO10G03070 vs. NCBI_GenBank
Match: OQS04647.1 (splicing factor 3A subunit [Thraustotheca clavata])

HSP 1 Score: 308.5 bits (789), Expect = 3.800e-80
Identity = 156/264 (59.09%), Postives = 190/264 (71.97%), Query Frame = 0
Query:  141 KQEEECLKGIPAGLQRLTLGGRHLRDEQTLAESAVVGHTTLHLLLPLPGGIDFQHRDGSKFGGGGQMSESLANADRRERLRKLALETIDLNKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQENLARRAAKEAKE--QQYRPNKPTVVAARRVMKIGRPGYKVTKARDLSTRQRSLIFEIDYPQAEEDVQPRHRFMSAFEQRVDSTKDREWQYLLFACEPYETVGFKIPNVEIDKGEGRFSSSWDGKAKKFVLQLYF 403
            K +   L GIPA L  L      L D   L++  +V  +TL+ L+ L GG+DFQ+R G+KFGGGG MSE  AN DRRERLRKLALET+DL+KDPY ++NHLG++ECKLCLTLH+NEGNYLAHTQGKRHQ NLARRAAK+A E      P +   V   R +KIG PGYKVTK RD  T  R L+F+I YP   +  QPRHRFMSAFEQRV+   D+ +QYLLFACEPYET+ FKIPN+E+DK +G+F ++WD   K F L + F
Sbjct:   27 KYQVSKLMGIPASLFNLAFNAHQLIDANYLSDYGIVHGSTLNALMSLKGGMDFQNRVGTKFGGGGVMSEQQANIDRRERLRKLALETVDLSKDPYILKNHLGTFECKLCLTLHSNEGNYLAHTQGKRHQTNLARRAAKDAAEASASVPPPQKLDVPKIRTIKIGLPGYKVTKQRDPDTGARMLLFQIFYPDIMDGYQPRHRFMSAFEQRVE-VADKNFQYLLFACEPYETIAFKIPNLEVDKSDGKFYTNWDKSGKSFTLHVAF 289          
BLAST of NO10G03070 vs. NCBI_GenBank
Match: XP_022094954.1 (splicing factor 3A subunit 2-like [Acanthaster planci])

HSP 1 Score: 298.5 bits (763), Expect = 4.000e-77
Identity = 155/247 (62.75%), Postives = 191/247 (77.33%), Query Frame = 0
Query:  191 IDFQHRDGSKFGGGGQMSESLANADRRERLRKLALETIDLNKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQENLARRAAKEAKEQQYRP---NKPTVVAARRVMKIGRPGYKVTKARDLSTRQRSLIFEIDYPQAEEDVQPRHRFMSAFEQRVDSTKDREWQYLLFACEPYETVGFKIPNVEIDKGEGRFSSSWDGKAKKFVLQLYFR--EKGAEGGGREGG---RGTPVPDHLQRNEG 430
            +DFQHR G K GGGG  SES +N DRRERLR+LALETIDLNKDPYFM+NHLGSYECKLCLTLHNNEG+YLAHTQGK+HQ NLARRAAKEAK+   +P    KP  V  ++ +KIGRPGYKVTK RD +  Q+SL+F+IDYP+  E + PRHRFMSA+EQRV+   D+ WQYLLFA EPYET+ FK+P+ E+DK E +F +SW+ + K+F LQ +F+   K  +GGG   G   RG P+PD+ + N+G
Sbjct:    1 MDFQHRAGGKTGGGGVASESESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQSNLARRAAKEAKDAPAQPALLEKPK-VDIKKFVKIGRPGYKVTKQRDPNLGQQSLLFQIDYPEIAEGIVPRHRFMSAYEQRVE-PPDKRWQYLLFAAEPYETIAFKVPSREVDKSEAKFWTSWNKETKQFFLQFHFKMEPKPMQGGGDGPGPRIRG-PMPDNHRSNQG 244          
BLAST of NO10G03070 vs. NCBI_GenBank
Match: XP_008610743.1 (hypothetical protein SDRG_06723 [Saprolegnia diclina VS20] >EQC35981.1 hypothetical protein SDRG_06723 [Saprolegnia diclina VS20])

HSP 1 Score: 295.0 bits (754), Expect = 4.400e-76
Identity = 149/259 (57.53%), Postives = 186/259 (71.81%), Query Frame = 0
Query:  147 LKGIPAGLQRLTLGGRHLRDEQTLAESAVVGHTTLHLLLPLPGGIDFQHRDGSKFGGGGQMSESLANADRRERLRKLALETIDLNKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQENLARRAAKEAKEQQ---YRPNKPTVVAARRVMKIGRPGYKVTKARDLSTRQRSLIFEIDYPQAEEDVQPRHRFMSAFEQRVDSTKDREWQYLLFACEPYETVGFKIPNVEIDKGEGRFSSSWDGKAKKFVLQLYF 403
            L G+PA L +L+   R L +   + +  +   +TL   + L GG+DFQ+R GSK G GG  SE  AN DRRERLRKLALET+DL+KDPY ++NHLG++ECKLCLTLH+NEGNYLAHTQGKRHQ NLARRAAK+A E       P KP +   R + KIG PGYKVTK RD  T  R L+F+I YP   + +QPRHRFMSAFEQRV+   D+ +QYLLFACEPYET+ FK+PN+++DK EG+F ++WD   K F L + F
Sbjct:   33 LMGVPAALFKLSFNARLLVETNFVHDYCITHGSTLAASMALKGGMDFQNRVGSKPGSGGVASEQQANIDRRERLRKLALETVDLSKDPYILKNHLGTFECKLCLTLHSNEGNYLAHTQGKRHQTNLARRAAKDAAEASANVQAPPKPEIQRIRTI-KIGLPGYKVTKQRDPDTGARMLLFQIFYPDVMDGLQPRHRFMSAFEQRVE-VADKNFQYLLFACEPYETIAFKVPNLDVDKSEGKFFTNWDKLGKSFTLHVTF 289          
BLAST of NO10G03070 vs. NCBI_GenBank
Match: XP_012199186.1 (hypothetical protein SPRG_05192 [Saprolegnia parasitica CBS 223.65] >KDO30003.1 hypothetical protein SPRG_05192 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 293.5 bits (750), Expect = 1.300e-75
Identity = 148/259 (57.14%), Postives = 185/259 (71.43%), Query Frame = 0
Query:  147 LKGIPAGLQRLTLGGRHLRDEQTLAESAVVGHTTLHLLLPLPGGIDFQHRDGSKFGGGGQMSESLANADRRERLRKLALETIDLNKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQENLARRAAKEAKEQQ---YRPNKPTVVAARRVMKIGRPGYKVTKARDLSTRQRSLIFEIDYPQAEEDVQPRHRFMSAFEQRVDSTKDREWQYLLFACEPYETVGFKIPNVEIDKGEGRFSSSWDGKAKKFVLQLYF 403
            L G+P  L +L+   R L +   + +  +   +TL   + L GG+DFQ+R GSK G GG  SE  AN DRRERLRKLALET+DL+KDPY ++NHLG++ECKLCLTLH+NEGNYLAHTQGKRHQ NLARRAAK+A E       P KP +   R + KIG PGYKVTK RD  T  R L+F+I YP   + +QPRHRFMSAFEQRV+   D+ +QYLLFACEPYET+ FK+PN+++DK EG+F ++WD   K F L + F
Sbjct:   33 LMGVPVALFKLSFNARLLVETNFVHDYCITHGSTLAASMALKGGMDFQNRVGSKPGSGGVASEQQANIDRRERLRKLALETVDLSKDPYILKNHLGTFECKLCLTLHSNEGNYLAHTQGKRHQTNLARRAAKDAAEASANVQAPPKPEIQRIRTI-KIGLPGYKVTKQRDPDTGARMLLFQIFYPDVMDGLQPRHRFMSAFEQRVE-VADKNFQYLLFACEPYETIAFKVPNLDVDKSEGKFFTNWDKLGKSFTLHVTF 289          
BLAST of NO10G03070 vs. NCBI_GenBank
Match: XP_009037864.1 (hypothetical protein AURANDRAFT_28099 [Aureococcus anophagefferens] >EGB07228.1 hypothetical protein AURANDRAFT_28099 [Aureococcus anophagefferens])

HSP 1 Score: 292.4 bits (747), Expect = 2.900e-75
Identity = 146/225 (64.89%), Postives = 171/225 (76.00%), Query Frame = 0
Query:  194 QHRDGSKFGGGGQMSESLANADRRERLRKLALETIDLNKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQENLARRAAKEAKEQQYRPNKPTVVAARRVMKIGRPGYKVTKARDLSTRQRSLIFEIDYPQAEEDVQPRHRFMSAFEQRVDSTKDREWQYLLFACEPYETVGFKIPNVEIDKGEGRFSSSWDGKAKKFVLQLYFRE--KGAEGGGREGGR 417
            Q R  S+ GGGG  S   AN DRRERLRKLALET+DLNKDPYFMRNHLG+YECKLCLTLHN EGNYLAHTQGKRHQ+NLARRA KEA++    P     V  R  +KIGRPGYKVTK+RD +T QR L+FE+DYP+A++  QPRHRFMSA+EQRV+   D+ +QYLLFACEPYET+GFKIPN ++DK +GRF ++WD   KKF L L F +  K A       GR
Sbjct:    4 QDRVNSRHGGGGVQSSEQANVDRRERLRKLALETVDLNKDPYFMRNHLGTYECKLCLTLHNTEGNYLAHTQGKRHQQNLARRAFKEARDAPIAPAATRYVEKRHTIKIGRPGYKVTKSRDAATSQRCLLFEVDYPEADDASQPRHRFMSAYEQRVE-PPDKAYQYLLFACEPYETIGFKIPNHDVDKDQGRFFTNWDVVGKKFTLSLQFDDDAKPAPAQAASAGR 227          
BLAST of NO10G03070 vs. NCBI_GenBank
Match: XP_013876667.1 (PREDICTED: splicing factor 3A subunit 2 [Austrofundulus limnaeus] >XP_013876673.1 PREDICTED: splicing factor 3A subunit 2 [Austrofundulus limnaeus])

HSP 1 Score: 291.6 bits (745), Expect = 4.900e-75
Identity = 143/218 (65.60%), Postives = 172/218 (78.90%), Query Frame = 0
Query:  191 IDFQHRDGSKFGGGGQMSESLANADRRERLRKLALETIDLNKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQENLARRAAKEAKEQQYRPNKPTV-VAARRVMKIGRPGYKVTKARDLSTRQRSLIFEIDYPQAEEDVQPRHRFMSAFEQRVDSTKDREWQYLLFACEPYETVGFKIPNVEIDKGEGRFSSSWDGKAKKFVLQLYFREKGA 408
            +DFQHR G K G GG  S S +N DRRERLR+LALETID+NKDPYFM+NHLGSYECKLCLTLHNNEG+YLAHTQGK+HQ NLARRAAKEAKE   +P    V V  ++ +KIGRPGYKVTK RD  T Q+SL+F+IDYP+  E + PRHRFMSA+EQR++   DR WQYLLFA EPYET+ FK+P+ EIDK E RF + W+ + K+F LQ +F+ + A
Sbjct:    1 MDFQHRAGGKTGSGGVASASESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQTNLARRAAKEAKESPAQPAPAKVKVEVKKFVKIGRPGYKVTKQRDPETGQQSLLFQIDYPEIAEGIGPRHRFMSAYEQRIE-PPDRRWQYLLFAAEPYETIAFKVPSREIDKAENRFWTHWNKETKQFFLQFHFKMEKA 217          
BLAST of NO10G03070 vs. NCBI_GenBank
Match: XP_015812655.1 (PREDICTED: splicing factor 3A subunit 2 [Nothobranchius furzeri])

HSP 1 Score: 291.6 bits (745), Expect = 4.900e-75
Identity = 146/223 (65.47%), Postives = 174/223 (78.03%), Query Frame = 0
Query:  191 IDFQHRDGSKFGGGGQMSESLANADRRERLRKLALETIDLNKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQENLARRAAKEAKE--QQYRPNKPTVVAARRVMKIGRPGYKVTKARDLSTRQRSLIFEIDYPQAEEDVQPRHRFMSAFEQRVDSTKDREWQYLLFACEPYETVGFKIPNVEIDKGEGRFSSSWDGKAKKFVLQLYFREKGAEGGG 412
            +DFQHR G K G GG  S S +N DRRERLR+LALETID+NKDPYFM+NHLGSYECKLCLTLHNNEG+YLAHTQGK+HQ NLARRAAKEAKE   Q  P K   V  ++ +KIGRPGYKVTK RD  T Q+SL+F+IDYP+  E + PRHRFMSA+EQR++   DR WQYLLFA EPYET+ FK+P+ EIDK E RF + W+ + K+F LQ +F+ + A  GG
Sbjct:    1 MDFQHRAGGKTGSGGVASASESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQXAPAK-VKVEVKKFVKIGRPGYKVTKQRDPETGQQSLLFQIDYPEVAEGIGPRHRFMSAYEQRIE-PPDRRWQYLLFAAEPYETISFKVPSREIDKAENRFWTHWNRETKQFFLQFHFKMEKAISGG 221          
BLAST of NO10G03070 vs. NCBI_GenBank
Match: XP_020381781.1 (splicing factor 3A subunit 2 [Rhincodon typus] >XP_020381787.1 splicing factor 3A subunit 2 [Rhincodon typus] >XP_020381793.1 splicing factor 3A subunit 2 [Rhincodon typus] >XP_020381801.1 splicing factor 3A subunit 2 [Rhincodon typus])

HSP 1 Score: 291.2 bits (744), Expect = 6.400e-75
Identity = 142/214 (66.36%), Postives = 170/214 (79.44%), Query Frame = 0
Query:  191 IDFQHRDGSKFGGGGQMSESLANADRRERLRKLALETIDLNKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQENLARRAAKEAKEQQYRPNKPTV-VAARRVMKIGRPGYKVTKARDLSTRQRSLIFEIDYPQAEEDVQPRHRFMSAFEQRVDSTKDREWQYLLFACEPYETVGFKIPNVEIDKGEGRFSSSWDGKAKKFVLQLYFR 404
            +DFQHR G K G GG  S S +N DRRERLR+LALETID+NKDPYFM+NHLGSYECKLCLTLHNNEG+YLAHTQGK+HQ NLARRAAKEAKE   +P    V V  ++ +KIGRPGYKVTK RD    Q+SL+F+IDYP+  E V PRHRFMSA+EQR++   DR WQYLLFA EPYET+ FK+P+ EIDK EG+F + W+ + K+F LQ +F+
Sbjct:    1 MDFQHRPGGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQTNLARRAAKEAKESPAQPAPEKVKVEVKKFVKIGRPGYKVTKQRDAEVGQQSLLFQIDYPEIAEGVIPRHRFMSAYEQRIE-PPDRRWQYLLFAAEPYETISFKVPSREIDKVEGKFWTHWNRETKQFFLQFHFK 213          
The following BLAST results are available for this feature:
BLAST of NO10G03070 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25510.12.200e-10492.20splicing factor 3a subunit 2 [Nannochloropsis gadi... [more]
CBN77971.13.200e-9564.16conserved unknown protein [Ectocarpus siliculosus][more]
OQS04647.13.800e-8059.09splicing factor 3A subunit [Thraustotheca clavata][more]
XP_022094954.14.000e-7762.75splicing factor 3A subunit 2-like [Acanthaster pla... [more]
XP_008610743.14.400e-7657.53hypothetical protein SDRG_06723 [Saprolegnia dicli... [more]
XP_012199186.11.300e-7557.14hypothetical protein SPRG_05192 [Saprolegnia paras... [more]
XP_009037864.12.900e-7564.89hypothetical protein AURANDRAFT_28099 [Aureococcus... [more]
XP_013876667.14.900e-7565.60PREDICTED: splicing factor 3A subunit 2 [Austrofun... [more]
XP_015812655.14.900e-7565.47PREDICTED: splicing factor 3A subunit 2 [Nothobran... [more]
XP_020381781.16.400e-7566.36splicing factor 3A subunit 2 [Rhincodon typus] >XP... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001181NSK001181Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G03070.1NO10G03070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|629606gene_3897Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100032g11gene4981Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G03070.1NO10G03070.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G03070 ID=NO10G03070|Name=NO10G03070|organism=Nannochloropsis oceanica|type=gene|length=5485bp
TTTTGATCGAAATATGTGGTATTTCGTGATATTTTTTCAGTTAAACCATG
GCCGACGTCGATCTCACCTTAGAATCAGAACAACCCTTCAGAAAGCGAAG
CAAACGAAGCGAACAACCCCTCTTCGTGCATCTCTTACTGAGGCATACCA
TTCTTCTTGCATTTCCGCTGGCTTACATTGTTGGCAAGCCCCCCAAAGGG
AGGAGCCGGCTGCAACGATGGCTGTCGCAGCCGAAACTTGACTTTGCATG
ACCTGCTGCTGGTAGTGGTGGTGGAAGTAAAGGTGGTGCGGGTCCTGGTG
TCCGCCACCTCCATGCCAGTCAAACGAGTCTTGGTTGGAAGGCCTCTACT
CTTCCTCTTTAACATGCCTTGGAGCCACGTCAATGACGATTCGCCTATTT
GTCTTGCCCTTGAGCAGTTCCTCCGTCAAATCGATGACCTTTCCGTCGGG
CGTCTGCACAGACACGTCCTCGTATTCCCACCTCTCCATCCCCTCTCGTT
CCCCTCCCATCTCCTCTTCATGCCGACTCGCCACCACCTGAACAAACATC
TCCCTTGGTTTACTCGAGGCCACCAAAAATTGCATCACAACATGCTTGTC
TGCTCCATTCACCACCTGCATACTCATCTTATGCAAACCCGTCGTATGAA
AATCCGTCCCGTATCTCCCCAACTTCGGGTGCACATTAATAATCTCCAAC
ACGTCGCGTTCGATCGAACCGCGCGCATTCTTCAACCCATCCAACATCAC
ACCGTCCGTCATCATGTCAATCAACGGCCCAAAGAACGATGGCGGTGCCC
CTGGAGGCCTCTGTCTCCGCATCACCTGCCGCATCAAATGCGGTTGCCGA
TTCAAAAGTTTAAACCCGGCAAACGCCACCAAAAACAAGACAGCAAATGC
CGTTGAAGTCGCGAAGAGGGAGACCGCTAATACACCAACTCCAATCACAA
AAATCGTTCCATAGAATACTTGAGCAAACCAGGGTAAGCCCAACTGGCGA
ATGAATTTCGGGGACCAAAAATGACGGCATGTCGCAGAAGAAGAGGGAAG
GGAGTGGAGGAGGGGCGAGAGGAGACGTTGTGTGCGAAGGGAGGAGGAGA
TAATGGCTTGCGTCATGATTCCTCGTTTTTGTGGGAAAAAAGAGGAGGAG
GAGAAGAAGGATAAGGAGGAGGAGGAGGAGGAGGATAAGGAGGAGGAGGA
GGAGGAGTAGGAGGAGGAGTAGGAGGAGGAGGAGGAAGGGTGGAAAGAGC
ACGAGAGGAGTGAGGAAAGCGGTGCTATTGGCGAGATCTCAGACGAAGGA
GAGGATAGCGATCGTCGTGGACCTCTTTGAGCTGATGCAGCTACTGCTGT
CAACTCCAGAGTCAACGAGGGACGGGGTGTGACCGTGATATGACTGATGG
TGGTGTTGGGAAGGGTGGAAGAAGAAGCAGCGGGCTTGGGTGGCGATGTC
CATACATGCGGGTATGGTCTTATTGTCGTCGTCACTGCTGCCGCTGCTGA
CACTTGTATCCTATTTGTCGCCCTGGCACTGGTGCTGGCATGGCTTCCTG
CACAGAGGGGGACATACCAGGTGCCGACGTGGCGGAACACCAACCGTTGC
GCTGCCTTCATTTTGTGACCCCCCTTGTGTTCTTGTTTTCAAAATTGCCT
GCATGGTTTGTTTCGTTTTTGGTTGTTTGAAAGAAAGGGGCCATGAAAAT
AAATGATATTGACACCAGTGAATATATAGTCAGAGAATTTCTCTCTTCCT
CTCGCCTTTCTGCTCCTCCCGCTCCTTGTCATCGTGTCTCGTTGTATGTG
CGTCTTTTACCATCAGCTTACTAGAATGATGTGCTCATGTGGCGGAAGGA
TCAAACTTGGAAAGAGTTGTCGCGAGAGAAACCTTTCGCACATATCCGCG
TCGGGCATGAGTGCATTATCCGGTCGCGCGTTTCCCTCAAAAAAGGAAAA
AACGTATTAAAAAGAGAGTTGACTCCTTCCTCGTTTGGGAAGAGGACCAC
ATGCATACATACACACAAATCCCCAAAGCGAGGCAAAAAGAAGCCTTCTT
CTCTCGCATGACCGTCGCGTCTGGGTCGTGCTAAAACGTGGAGGAAAGTA
GATGGGCGCCTTACCCCCAGAAGGAAGGCGCAGCTCTCTTCCACGGGAAC
AGGACATGCATGTCTCGCCAGTCACAAGACCAACGACACACACTTGCCCC
TCCGACCTATTCGTCTTGAATTGAGTTTCTTCTTGTCACGAAGACAAGCA
GTGTCCTGTCTGCCTTTATAAAGCAGCCAAACATCTCACAGCTGCCCACC
ATAAAATATAAGACAGGGTTCTCCCTCCCTCCCTCTCTCCCTCCCCACGC
ATACCCTCCTTCGGCCACAAGGACACTGAAAAGGGAGGCAGGCGCAAAAG
ATGAAAGCGAAGTACTAAAAGGTATCTGTGCTCTACTCCCGCCTTTACAA
TGCACATTTCGTGGACTCATAAATGGCATCGAGTATCAGGAGCGTTCGTG
CCGCCGGTCAAGGCACAACACGCTATGGCAACCCACCCTGGACGCAGTCA
CGACAAGTTTCTAATCATTTGGAAAAAGACAAAACACAAAACATCACCAC
TATTCTGAGGAGAGGGGTAGAGATATGCGGCGTGCAAGAGCCTAGGGCGT
TCGATCAATTGCGAAACTTGTGTTCGGACTGACTTACTTCGTGTTGCCGA
TGCTGGCTGCGGCGGTAGCAGTGCCCGTTGAGGTTGCCAGAGCAAGAGGC
GCAAGGTTCCAGGCGGGCTCACACGACAAGCATCACAAGCAGCGAGTTGA
TCCTTAGCCTGGGATTAAGGTGGAGACAGGGTCGTGGCATCAGCGTGAAA
AAAGTTGGTGTGAAACGAAGTGTGCAGGAGCAGCCCGGAGAAAGGCAGTG
CAAGGTGTTAGGAGGTTGGAGAAGGGGGCATGGGAAGAACTTTAGCAGGC
GTCCTTACACACAGGAAACACAGAATTACATGGCACGCTAGCAGCTACTT
ACTCTTCTATAGCTATGCAAGCCTCCTATGCAGCTATGATCCGGTGTCCA
AGGCATTTTTGCTCGTTGAGGACCGCAAGCCTCCTCATGAACATCATCAG
TCATCCCATGCTTCACCCAACGCAATCCAACCCCAACACAGCACCATGGA
GCTCTTTGTGGTGCTGCCCGCCACGACCAGCAGCGGCAGCACGTCGCGCA
CGGTGGCGCTCGAGGTGGGCTCCGCGGGATCAACGACAGTCAGGGATCTG
AAAAAGGCCATCCAACATCGCAGCGCGCAGGTGTACGGCTCCACCAAGAC
CACATGCGGCATCCACAACATCAGCAAGAGCCGCAAGAGCACGGTAGAGA
AACAAGAGGAAGAATGCTTGAAAGGGATTCCTGCAGGGTTGCAGCGTTTG
ACACTGGGGGGCCGGCATTTGCGGGATGAGCAGACGCTGGCAGAAAGCGC
GGTTGTCGGgtacgtaagacatgcatcacttgtgtctgtgtatctatgaa
cccacgctcttgccaaagactggctgttgtccgctcttgtactgctgcag
gcaccttcttcattattttcctctgcctgtgtatgatcggtaagaacgga
gtatccctcgcttctctgggggaccgcctcaagccccatggcgttcaagt
cccttcatggacctccaaaaattacagtgctaagaacgcatgtgtgtata
ttccagtgtatccatgtgtgtgtgttcccttttctcgcctgcttgaccga
ctgacttctcttgctgtggtgagggagggaggaagggagggagggaggga
aggcacacgcgcacacctacagggaggcacacacatgtcactggctgtct
tctacgactgtggtgcagaaagatttatctttccacggacagatacggac
cgtatatttaaaccctctttttccttcccctacccctctcggtccttttc
actccgtcagctcatcttccctccctccctccctctctccctccctccct
acgtttttcccaccccccacccacagCCATACCACCCTCCACCTCCTCCT
TCCCCTCCCCGGCGGCATCGACTTCCAACACCGGGATGGTTCCAAATTCG
GCGGTGGCGGACAAATGTCCGAATCGCTGGCCAACGCCGACCGGCGGGAA
CGCCTGCGGAAGCTGGCTTTGGAGACGATCGACTTGAATAAAGATCCGTA
TTTTATGCGCAATCACCTGGGTTCCTACGAATGCAAGCTGTGCTTAACTC
TTCACAACAATGAAGGGAATTACTTGGCCCACACTCAGGGGAAACGGCAC
CAGGAGAATTTGGCGCGGAGGGCAGCGAAGGAGGCTAAGGAGCAGCAGTA
TCGCCCCAACAAGCCAACGGTCGTGGCAGCCCGAAGAGTGATGAAAATCG
GGAGGCCAGGGTACAAGGTGACCAAGGCAAGGGATCTAAGCACGCGGCAA
CGGTCGTTGATATTTGAAATCGACTATCCCCAGGCCGAGGAAGACGTCCA
GCCGCGGCACCGGTTTATGAGCGCGTTTGAGCAACGGGTTGATAGCACCA
AGGACCGGGAGTGGCAGTACCTGCTGTTTGCCTGTGAGCCATACGAGACG
GTGGGGTTCAAGATTCCCAACGTAGAGATAGATAAGGGAGAGGGGCGGTT
CTCTTCGTCGTGGGATGGAAAGGCCAAGAAGTTTGTGTTGCAGTTGTACT
TCCGTGAGAAGGGGGCCGAAGGGGGAGGAAGGGAGGGAGGGAGGGGGACG
CCAGTCCCTGATCATTTGCAGAGGAATGAGGGAAGAGGGCCATCTCCGCG
GGGGGGAGGAGCGGGCATAATGTATGGTGGTGGGCACCAGCAGCAACAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGATGTATCCTCCTCCT
CCTCCACCACCGCACTTACAGCAGCATTTGAGAGGTGTCGGTCAGCCTCC
TCCTCCTCCTCCCCCTCCTCCTGGGCGACCGGGAGGAGGGTTCGGAGGGT
ATGGAGGGGGAGCACCCCCTCCTCCTCCTCCTCCCCCTCCTCCTAGGTAT
TAGGGGGGAAGGGGTTTTCGTGTCACGGATGGGTGCATGGATAGATTGGT
AGCGTGGTGAGACGGAAGGGATAAAAAGGAAGAGGAGAAATAGGTGAGCC
ATGAGAATATGGACAAGGATAAAAAGAAGCACGTCAAGAAGATCCAGAAA
GGCTGTGCAAAACAAGGGCGGCAATCAGACCATGAAGAAGAACAAGAGAC
AACGACGCAAAAACGATGAGAATCATTTACATGTTTCCCAGCTATATTTC
GAACACGACCGACCTACCCCTCCTCTACCTACCCCTCCGCCTCATCCAAC
GTCGGATCCACGGCCAACACAATCTTGCCCGCGTTCTCATTCCTTTCCAT
CATCGCATGGGCCTCCCCCACCTCCTCCCACCCCACTGTTCTGAACACGT
TCGTTCTATACCCTCCTCCCCCAGACTCCTTCCCT
back to top

protein sequence of NO10G03070.1

>NO10G03070.1-protein ID=NO10G03070.1-protein|Name=NO10G03070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=519bp
MGRTLAGVLTHRKHRITWHASSYLLFYSYASLLCSYDPVSKAFLLVEDRK
PPHEHHQSSHASPNAIQPQHSTMELFVVLPATTSSGSTSRTVALEVGSAG
STTVRDLKKAIQHRSAQVYGSTKTTCGIHNISKSRKSTVEKQEEECLKGI
PAGLQRLTLGGRHLRDEQTLAESAVVGHTTLHLLLPLPGGIDFQHRDGSK
FGGGGQMSESLANADRRERLRKLALETIDLNKDPYFMRNHLGSYECKLCL
TLHNNEGNYLAHTQGKRHQENLARRAAKEAKEQQYRPNKPTVVAARRVMK
IGRPGYKVTKARDLSTRQRSLIFEIDYPQAEEDVQPRHRFMSAFEQRVDS
TKDREWQYLLFACEPYETVGFKIPNVEIDKGEGRFSSSWDGKAKKFVLQL
YFREKGAEGGGREGGRGTPVPDHLQRNEGRGPSPRGGGAGIMYGGGHQQQ
QQQQQQQQQQQQQMYPPPPPPPHLQQHLRGVGQPPPPPPPPPGRPGGGFG
GYGGGAPPPPPPPPPPRY*
back to top
Synonyms
Publications