NO10G03020, NO10G03020 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO10G03020 vs. NCBI_GenBank
Match: EWM25530.1 (ring u-box domain-containing protein [Nannochloropsis gaditana]) HSP 1 Score: 357.8 bits (917), Expect = 4.300e-95 Identity = 205/411 (49.88%), Postives = 261/411 (63.50%), Query Frame = 0 Query: 1 MTPPNAQGRQPPAGSREAYGGVRLEAMTGGDRIVN---DLAAAAGNAGGGRRRMHGSWAPNPPTGPQTVVQKTKMVRNACHVRKDTVRLVPPNFQPSGQEEYSSSSSICGGG----RFHLSFRFDATVPCNVAVFWVATEGKDEAGGLCHKTLMSVEEEWVVGPHRFEAGANQMYSTAALGYQGADLLKA--SLEGEG--GRGVAGGKVKSNEKEDLSVFIVLRPCVEEDDDVGQGKEGKER--GEVFAQVTVMSLTHSVKIVGSVGERKG---KEDAWVGRVVKQKIETPDGVFVLQDIYGIAGSMASAXXXXXXXXXXXXXXXXXXXXXXTAEKEEVEQEINRAECVVCLTNKRELAILPCRHMCVCRACAAECIQSQDSRCPICRNPAHALLKLTLDEDDHYCRSSAS 396 MTPPNAQ RQPP GS+EAY G+R E G R+ + D AAAA NA GR W NPP PQTVVQ+TKM++N CH+ KDT+RL S ++E + + GG R+HLSFRFD+ PC VAV+WVA E K+ AG LCH L+ +E W GP RF+AG NQ YST A GY GADL +A +L G G G GG+ + KE L+V+IV+RP ++D+ G GKE ++ G+V AQ+T++ + GE +G +E+ W + +KQKIET +G++VLQ+IYGIAG+ A A++EE E RA+CVVCLTNKRELAILPCRHMCVCR CAAECIQ+QDS+CPICRNPA ALLKLTL+++DH SS+S Sbjct: 8 MTPPNAQDRQPPPGSQEAYSGIRFETRPGIGRLFSGTADAAAAAANAANGR-----VWVVNPPRRPQTVVQRTKMIKNTCHLHKDTLRL-----GVSREKETETGKDMKDGGGDKARYHLSFRFDSEQPCTVAVYWVARENKEAAGHLCHTPLLPDKETWTAGPDRFQAGHNQEYSTKATGYTGADLSRARQALGGSGRVGEPRTGGEESAVGKESLNVYIVMRPSQDKDNVDGGGKEAEQMPDGDVRAQITLLGVNLVPLPRAEGGELQGEGRREERWEVKRIKQKIETNEGIYVLQEIYGIAGTAAGPSDDTKREVDGTGDAPAG------ADREE---ETGRADCVVCLTNKRELAILPCRHMCVCRDCAAECIQNQDSKCPICRNPAQALLKLTLEDNDHRRSSSSS 399
BLAST of NO10G03020 vs. NCBI_GenBank
Match: GAY03319.1 (RING zinc finger-like protein [Pythium insidiosum]) HSP 1 Score: 108.6 bits (270), Expect = 4.500e-20 Identity = 91/317 (28.71%), Postives = 139/317 (43.85%), Query Frame = 0 Query: 67 VQKTKMVRNACHVRKDTVRLVPPNFQPSGQEEYSSSSSICGGGRFHLSFRFDATVPCNVAVFWVATEGKDEAGGLCHKTLMSVEEEWVVGPHRFEAGANQMYSTAALGYQGADLLKASLEGEGGRGVAGGKVKSNEKEDLSVFIVLRP--CVEEDDDVGQGKEGKERGEVFAQVTVMSLTHSVKIVGSVGERKGKEDAWVGRVVKQKIETPDGVFVLQDIYGIAGSMASAXXXXXXXXXXXXXXXXXXXXXXTAEKEEVEQEINRAECVVCLTNKRELAILPCRHMCVCRACAAECIQSQDSRCPICRNPAHALLKL 382 +Q+T V+N +++K T++LVP S GR+ L F FDAT PC + V+ A E D+ G +L E E + G Q +ST A ++ +GG V G++ ++E S + P V E + G+ + + F + T G E W +V+KQKI+ + LQ+IYGI G++ +A TA+ +EVE + AEC++C+ R +LPCRHMC+C C AE ++ S CPICR ALL++ Sbjct: 74 MQQTSTVKNHVNLKKSTLKLVP-------------SKDSDRPGRYVLEFMFDATKPCRIKVYVAAIETIDDDTGCSSFSLAHPERELIT--TTCPDGLGQQFST------------AEVQADGGCCVDVGELSASELVYDSTASLRFPLIVVLEVQNTGRNPQSQATFATFVKKT------------------GNE--WGVKVLKQKIQVDGMTYELQEIYGIDGAVTAA--------PKNDGEPDEAGEKKTAKSDEVEIP-DGAECIICMCEPRNTTVLPCRHMCLCGEC-AEALRRSSSTCPICRTRVEALLQI 333
BLAST of NO10G03020 vs. NCBI_GenBank
Match: NP_190909.1 (RING/U-box superfamily protein [Arabidopsis thaliana] >Q9LFH6.1 RecName: Full=Probable E3 ubiquitin-protein ligase LUL2; AltName: Full=Probable RING-type E3 ubiquitin transferase LUL2; AltName: Full=Protein LOG2-LIKE UBIQUITIN LIGASE 2; AltName: Full=RING finger protein 269 >CAB67648.1 putative protein [Arabidopsis thaliana] >AAM61084.1 putative RING zinc finger protein [Arabidopsis thaliana] >AAO24565.1 At3g53410 [Arabidopsis thaliana] >BAF00081.1 hypothetical protein [Arabidopsis thaliana] >AEE79082.1 RING/U-box superfamily protein [Arabidopsis thaliana]) HSP 1 Score: 107.1 bits (266), Expect = 1.300e-19 Identity = 92/322 (28.57%), Postives = 138/322 (42.86%), Query Frame = 0 Query: 68 QKTKMVRNACHVRKDTVRLVPPNFQPSGQEEYSSSSSICGGGRFHLSFRFDATVPCNVAVFWVATEGKDEAGGLCHKTLMSVEEEWVVGPH-RFEAGANQMYSTA-ALGYQGADLLKASLEGEGGRGVAGGKVKSNEKEDLSVFIVLRPCVEEDDDVGQGKEGKERGEVFAQVTVMSLTHSVKIVGSVGERKGKEDAWVGRVVKQKIETPDGVFVLQDIYGIAGSMASAXXXXXXXXXXXXXXXXXXXXXXTAEKEEVEQEINRAECVVCLTNKRELAILPCRHMCVCRACAAECIQSQDSRCPICRNPAHALLKLTLDEDD 388 Q+ +RN +++K+T+RL P P G+F LSF FDA+VP ++ V + A EGKD C+ L++ +E+ F G Q + A G +D+ +A L V++NE D+ V V EDD G ++ +TH V GE K RVVKQ + +VLQ+IYGI T + + ECV+CL+ R+ +LPCRHMC+C C A+ ++ Q + CPICR P LL++T++ +D Sbjct: 58 QEAVTIRNDINLKKETLRLEPDEQNP---------------GKFLLSFTFDASVPGSITVMFFAKEGKD-----CN--LIATKEDLFPSTQVSFAKGLEQRFKQACGTGIDFSDMSEADL------------VEANE-TDVYHVAVKAEVVSEDDHPESGTPNRQ------------ITHVVLEKDHKGEYK-------ARVVKQILWVNGNRYVLQEIYGIGN---------------------------TVDDNGEDANERGKECVICLSEPRDTTVLPCRHMCMCSGC-AKLLRFQTNLCPICRQPVDRLLEITVNNND 297
BLAST of NO10G03020 vs. NCBI_GenBank
Match: OAP01920.1 (LUL2 [Arabidopsis thaliana]) HSP 1 Score: 107.1 bits (266), Expect = 1.300e-19 Identity = 92/322 (28.57%), Postives = 138/322 (42.86%), Query Frame = 0 Query: 68 QKTKMVRNACHVRKDTVRLVPPNFQPSGQEEYSSSSSICGGGRFHLSFRFDATVPCNVAVFWVATEGKDEAGGLCHKTLMSVEEEWVVGPH-RFEAGANQMYSTA-ALGYQGADLLKASLEGEGGRGVAGGKVKSNEKEDLSVFIVLRPCVEEDDDVGQGKEGKERGEVFAQVTVMSLTHSVKIVGSVGERKGKEDAWVGRVVKQKIETPDGVFVLQDIYGIAGSMASAXXXXXXXXXXXXXXXXXXXXXXTAEKEEVEQEINRAECVVCLTNKRELAILPCRHMCVCRACAAECIQSQDSRCPICRNPAHALLKLTLDEDD 388 Q+ +RN +++K+T+RL P P G+F LSF FDA+VP ++ V + A EGKD C+ L++ +E+ F G Q + A G +D+ +A L V++NE D+ V V EDD G ++ +TH V GE K RVVKQ + +VLQ+IYGI T + + ECV+CL+ R+ +LPCRHMC+C C A+ ++ Q + CPICR P LL++T++ +D Sbjct: 58 QEAVTIRNDINLKKETLRLEPDEQNP---------------GKFLLSFTFDASVPGSITVMFFAKEGKD-----CN--LIATKEDLFPSTQVSFAKGLEQRFKQACGTGIDFSDMSEADL------------VEANE-TDVYHVAVKAEVVSEDDHPESGTPNRQ------------ITHVVLEKDHKGEYK-------ARVVKQILWVNGNRYVLQEIYGIGN---------------------------TVDDNGEDANERGKECVICLSEPRDTTVLPCRHMCMCSGC-AKLLRFQTNLCPICRQPVDRLLEITVNNND 297
BLAST of NO10G03020 vs. NCBI_GenBank
Match: XP_002908831.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY57645.1 conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 105.9 bits (263), Expect = 2.900e-19 Identity = 93/323 (28.79%), Postives = 145/323 (44.89%), Query Frame = 0 Query: 67 VQKTKMVRNACHVRKDTVRLVPPNFQPSGQEEYSSSSSICGGGRFHLSFRFDATVPCNVAVFWVATEGKDEAGGLCHKTLMSVEEEWVVGPHRFEAGANQMYSTAALGYQGADLLKASLEGEGGRGVAGGKVKSNEKEDLSVFIVLRPCVEEDDDVGQGKEGKERGEVFAQVTVMSLTHSVKIVGS-----VGERKGKEDAWVGRVVKQKIETPDGVFVLQDIYGIAGSMASAXXXXXXXXXXXXXXXXXXXXXXTAEKEEVEQEINRAECVVCLTNKRELAILPCRHMCVCRACAAECIQSQDSRCPICRNPAHALLKLTLD 385 +Q+T V+N +++K +++L+ +P ++ L F+ DAT C ++V+ VATE D G L+ ++ V+ H F +G Q++ +LK S + E VK E+E + L D D K G + F + V+ + K S +KG ED+W +++KQKI + LQ+IYGI GS+A+A A KEE++ AEC++CL R ILPCRHMC+C C AE ++ S CPICR ALL++ ++ Sbjct: 66 LQQTCTVKNPVNLKKASLKLLRSPTEPQ---------------QYALEFQLDATKRCLISVYLVATETIDADSGGSSFALVHSDKNPVLSQH-FPSGLGQVF-----------VLKGSEKEE-------NTVKEEEQEKPEQPLPLLDFSSYDPDEFVYKPGTAQ---FPLIIVLEVASDKKRPQSQTTFCTFVKKG-EDSWDVKMLKQKILVDGLTYELQEIYGIDGSVAAA-----PKTERNGASGDGQSDTTQAAKEEIDIP-EGAECIICLCEPRNTTILPCRHMCLCTEC-AEALRRSSSTCPICRTRVEALLQIRIE 343
BLAST of NO10G03020 vs. NCBI_GenBank
Match: XP_023005869.1 (probable E3 ubiquitin-protein ligase LUL2 [Cucurbita maxima]) HSP 1 Score: 104.4 bits (259), Expect = 8.500e-19 Identity = 88/328 (26.83%), Postives = 142/328 (43.29%), Query Frame = 0 Query: 57 PNPPTGPQTVVQKTKMVRNACHVRKDTVRLVPPNFQPSGQEEYSSSSSICGGGRFHLSFRFDATVPCNVAVFWVATEGKDEAGGLCHKTLMSVEEEWVVGPHRFEAGANQMYSTAALGYQGADLLKASLEGEGGRGVAGGKVKSNEKEDLSVFIVLRPCVEEDDDVGQGKEGKERGEVFAQVTVMSLTHSVKIVGSVGERKGKEDAWVGRVVKQKIETPDGVFVLQDIYGIAGSMASAXXXXXXXXXXXXXXXXXXXXXXTAEKEEVEQEINRAECVVCLTNKRELAILPCRHMCVCRACAAECIQSQDSRCPICRNPAHALLKLTLD 385 P PP P QK +RN +++K+T+R+ P P G+F +SF FDATV ++ +F+ A EG+D C+ T + E+ + RFE G Q Y G G+ K + +E ++ V V+ E G+ TV+ T + +I +V E+ E + +V+KQ + + LQ+IYGI S+ +++V+ ECV+CL+ R+ +LPCRHMC+C C A+ ++ Q +RCPICR P LL++ ++ Sbjct: 112 PMPPQTPYVEHQKAVTIRNDVNLKKETLRVEPDEENP---------------GQFLVSFLFDATVAGSITIFFFAKEGED-----CNLTPVK-EDTFQPVTVRFEQGLGQKYRQPC-----------------GTGIDFSKFEESELVKVNDTDVYPLAVK--------AEASTEGQTGPDGTVVPETMNSQITQAVFEKDKGE--YQVKVLKQILWVNGMRYELQEIYGIGNSV----------------------------EDDVDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGC-AKVLRFQTNRCPICRQPVDRLLEIRVN 362
BLAST of NO10G03020 vs. NCBI_GenBank
Match: XP_022960312.1 (probable E3 ubiquitin-protein ligase LUL2 [Cucurbita moschata]) HSP 1 Score: 104.0 bits (258), Expect = 1.100e-18 Identity = 88/328 (26.83%), Postives = 141/328 (42.99%), Query Frame = 0 Query: 57 PNPPTGPQTVVQKTKMVRNACHVRKDTVRLVPPNFQPSGQEEYSSSSSICGGGRFHLSFRFDATVPCNVAVFWVATEGKDEAGGLCHKTLMSVEEEWVVGPHRFEAGANQMYSTAALGYQGADLLKASLEGEGGRGVAGGKVKSNEKEDLSVFIVLRPCVEEDDDVGQGKEGKERGEVFAQVTVMSLTHSVKIVGSVGERKGKEDAWVGRVVKQKIETPDGVFVLQDIYGIAGSMASAXXXXXXXXXXXXXXXXXXXXXXTAEKEEVEQEINRAECVVCLTNKRELAILPCRHMCVCRACAAECIQSQDSRCPICRNPAHALLKLTLD 385 P PP P QK +RN +++K+T+R+ P P G+F +SF FDATV ++ +F+ A EG+D C+ T + + V H FE G Q Y G G+ K + +E ++ V V+ E G+ TV+ T + +I +V E+ E + +V+KQ + + LQ+IYGI S+ +++V+ ECV+CL+ R+ +LPCRHMC+C C A+ ++ Q +RCPICR P LL++ ++ Sbjct: 245 PMPPQTPYVEHQKAVTIRNDVNLKKETLRVEPDEENP---------------GQFLVSFLFDATVAGSITIFFFAKEGED-----CNLTPVKEDTFQPVTVH-FEQGLGQKYRQPC-----------------GTGIDFSKFEESELVKVNDTDVYPLAVK--------AEASTEGQTGPDGTVVPETMNSQITQAVFEKDKGE--YQVKVLKQILWVNGMRYELQEIYGIGNSV----------------------------EDDVDGSDPGKECVICLSEPRDTTVLPCRHMCMCSGC-AKVLRFQTNRCPICRQPVDRLLEIRVN 495
BLAST of NO10G03020 vs. NCBI_GenBank
Match: XP_023539423.1 (probable E3 ubiquitin-protein ligase LUL2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 104.0 bits (258), Expect = 1.100e-18 Identity = 88/328 (26.83%), Postives = 141/328 (42.99%), Query Frame = 0 Query: 57 PNPPTGPQTVVQKTKMVRNACHVRKDTVRLVPPNFQPSGQEEYSSSSSICGGGRFHLSFRFDATVPCNVAVFWVATEGKDEAGGLCHKTLMSVEEEWVVGPHRFEAGANQMYSTAALGYQGADLLKASLEGEGGRGVAGGKVKSNEKEDLSVFIVLRPCVEEDDDVGQGKEGKERGEVFAQVTVMSLTHSVKIVGSVGERKGKEDAWVGRVVKQKIETPDGVFVLQDIYGIAGSMASAXXXXXXXXXXXXXXXXXXXXXXTAEKEEVEQEINRAECVVCLTNKRELAILPCRHMCVCRACAAECIQSQDSRCPICRNPAHALLKLTLD 385 P PP P QK +RN +++K+T+R+ P P G+F +SF FDATV ++ +F+ A EG+D C+ T + + V H FE G Q Y G G+ K + +E ++ V V+ E G+ TV+ T + +I +V E+ E + +V+KQ + + LQ+IYGI S+ +++V+ ECV+CL+ R+ +LPCRHMC+C C A+ ++ Q +RCPICR P LL++ ++ Sbjct: 112 PMPPQTPYVEHQKAVTIRNDVNLKKETLRVEPDEENP---------------GQFLVSFLFDATVAGSITIFFFAKEGED-----CNLTPVKEDTFQPVTVH-FEQGLGQKYRQPC-----------------GTGIDFSKFEESELVKVNDTDVYPLAVK--------AEASTEGQTGPDGTVVPETMNSQITQAVFEKDKGE--YQVKVLKQILWVNGMRYELQEIYGIGNSV----------------------------EDDVDGSDPGKECVICLSEPRDTTVLPCRHMCMCSGC-AKVLRFQTNRCPICRQPVDRLLEIRVN 362
BLAST of NO10G03020 vs. NCBI_GenBank
Match: POM63839.1 (RING zinc finger-like protein [Phytophthora palmivora var. palmivora]) HSP 1 Score: 104.0 bits (258), Expect = 1.100e-18 Identity = 90/324 (27.78%), Postives = 141/324 (43.52%), Query Frame = 0 Query: 67 VQKTKMVRNACHVRKDTVRLVPPNFQPSGQEEYSSSSSICGGGRFHLSFRFDATVPCNVAVFWVATEGKDEAGGLCHKTLMSVEEEWVVGPHRFEAGANQMYSTAALGYQGADLLKASLEGEGGRGVAGGKVKSNEKEDLSVFIVLRPCVEEDDDVGQGKEGKERGEVFAQVTVMSLTHSVKIVGSVGE-----RKGKEDAWVGRVVKQKIETPDGVFVLQDIYGIAGSMASAXXXXXXXXXXXXXXXXXXXXXXTAEKEEVEQEI-NRAECVVCLTNKRELAILPCRHMCVCRACAAECIQSQDSRCPICRNPAHALLKLTLD 385 +Q+T V+N +++K +++L +P ++ L F FDAT PC ++V+ VA E D G L+ ++ V+ H F +G Q + +LK G K + +KED P ++ K F + V+ ++ K S +KG ED W +++KQKI + LQ+IYGI GS+A+A TA+ + E EI AEC++C+ R +LPCRHMC+C C AE ++ S CPICR P ALL++ ++ Sbjct: 66 LQQTCTVKNHVNLKKTSLKLQQSPAEPL---------------QYALEFSFDATKPCRISVYLVAAEIIDAETGSSSFALVHADKIPVLTQH-FSSGLGQHF-----------VLK-----------GGVKEEETDKEDHEKHEQSTPLLDFSPYDADELVYKAGTTQFPLIIVLEVSSDRKRPQSQSTFCTFVKKG-EDLWDIKMLKQKILVDGLTYELQEIYGIDGSVAAA-------PKTERSGAAGDGQPDTAQTAKDEIEIPEGAECIICMCEPRNTTVLPCRHMCLCSEC-AEALRKSSSTCPICRTPVEALLQIRVE 342
BLAST of NO10G03020 vs. NCBI_GenBank
Match: GAY03315.1 (RING zinc finger-like protein [Pythium insidiosum]) HSP 1 Score: 103.2 bits (256), Expect = 1.900e-18 Identity = 87/317 (27.44%), Postives = 137/317 (43.22%), Query Frame = 0 Query: 67 VQKTKMVRNACHVRKDTVRLVPPNFQPSGQEEYSSSSSICGGGRFHLSFRFDATVPCNVAVFWVATEGKDEAGGLCHKTLMSVEEEWVVGPHRFEAGANQMYSTAALGYQGADLLKASLEGEGGRGVAGGKVKSNEKEDLSVFIVLRP--CVEEDDDVGQGKEGKERGEVFAQVTVMSLTHSVKIVGSVGERKGKEDAWVGRVVKQKIETPDGVFVLQDIYGIAGSMASAXXXXXXXXXXXXXXXXXXXXXXTAEKEEVEQEINRAECVVCLTNKRELAILPCRHMCVCRACAAECIQSQDSRCPICRNPAHALLKL 382 +Q+T V+N +++K T++LVP ++ S C FDAT PC + V+ A E D+ G +L E E + G Q +ST A ++ +GG V G++ ++E S + P V E + G+ + + F + T E+ W +V+KQKI+ + LQ+IYGI G++ +A TA+ +EVE + AEC++C+ R +LPCRHMC+C C AE ++ S CPICR ALL++ Sbjct: 74 MQQTSTVKNHVNLKKSTLKLVP-------SKDSDRPGSSC----------FDATKPCRIKVYVAAIETIDDDTGCSSFSLAHPERELIT--TTCPDGLGQQFST------------AEVQADGGCCVDVGELSASELVYDSTASLRFPLIVVLEVQNTGRNPQSQATFATFVKKT--------------------ENEWGVKVLKQKIQVDGMTYELQEIYGIDGAVTAA--------PKNDGEPDEAGEKKTAKSDEVEIP-DGAECIICMCEPRNTTVLPCRHMCLCGEC-AEALRRSSSTCPICRTRVEALLQI 329 The following BLAST results are available for this feature:
BLAST of NO10G03020 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO10G03020 ID=NO10G03020|Name=NO10G03020|organism=Nannochloropsis oceanica|type=gene|length=1733bpback to top protein sequence of NO10G03020.1 >NO10G03020.1-protein ID=NO10G03020.1-protein|Name=NO10G03020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=400bpback to top Synonyms
Publications
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