NO10G03020.1, NO10G03020.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G03020.1
Unique NameNO10G03020.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1200
Alignment locationchr10:840543..842275 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:840543..842275 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G03020.1 vs.
Match: EWM25530.1 (ring u-box domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 362.1 bits (928), Expect = 2.300e-96
Identity = 211/411 (51.34%), Postives = 269/411 (65.45%), Query Frame = 0 
Query:    1 MTPPNAQGRQPPAGSREAYGGVRLEAMTGGDRIVN---DLAAAAGNAGGGRRRMHGSWAPNPPTGPQTVVQKTKMVRNACHVRKDTVRLVPPNFQPSGQEEYSSSSSICGGG----RFHLSFRFDATVPCNVAVFWVATEGKDEAGGLCHKTLMSVEEEWVVGPHRFEAGANQMYSTAALGYQGADLLKA--SLEGEG--GRGVAGGKVKSNEKEDLSVFIVLRPCVEEDDDVGQGKEGKER--GEVFAQVTVMSLTHSVKIVGSVGERKG---KEDAWVGRVVKQKIETPDGVFVLQDIYGIAGSMASAGGGGNSESGWKEGDDGGASKSATAEKEEVEQEINRAECVVCLTNKRELAILPCRHMCVCRACAAECIQSQDSRCPICRNPAHALLKLTLDEDDHYCRSSAS 396
            MTPPNAQ RQPP GS+EAY G+R E   G  R+ +   D AAAA NA  GR      W  NPP  PQTVVQ+TKM++N CH+ KDT+RL       S ++E  +   +  GG    R+HLSFRFD+  PC VAV+WVA E K+ AG LCH  L+  +E W  GP RF+AG NQ YST A GY GADL +A  +L G G  G    GG+  +  KE L+V+IV+RP  ++D+  G GKE ++   G+V AQ+T++ +          GE +G   +E+ W  + +KQKIET +G++VLQ+IYGIAG+ A     G S+   +E  DG     A A++EE   E  RA+CVVCLTNKRELAILPCRHMCVCR CAAECIQ+QDS+CPICRNPA ALLKLTL+++DH   SS+S
Sbjct:    8 MTPPNAQDRQPPPGSQEAYSGIRFETRPGIGRLFSGTADAAAAAANAANGR-----VWVVNPPRRPQTVVQRTKMIKNTCHLHKDTLRL-----GVSREKETETGKDMKDGGGDKARYHLSFRFDSEQPCTVAVYWVARENKEAAGHLCHTPLLPDKETWTAGPDRFQAGHNQEYSTKATGYTGADLSRARQALGGSGRVGEPRTGGEESAVGKESLNVYIVMRPSQDKDNVDGGGKEAEQMPDGDVRAQITLLGVNLVPLPRAEGGELQGEGRREERWEVKRIKQKIETNEGIYVLQEIYGIAGTAA-----GPSDDTKRE-VDGTGDAPAGADREE---ETGRADCVVCLTNKRELAILPCRHMCVCRDCAAECIQNQDSKCPICRNPAQALLKLTLEDNDHRRSSSSS 399
The following BLAST results are available for this feature:
BLAST of NO10G03020.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25530.12.300e-9651.34ring u-box domain-containing protein [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G03020NO10G03020Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G03020.1NO10G03020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G03020.1.cds1NO10G03020.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G03020.1.cds2NO10G03020.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G03020.1.cds3NO10G03020.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G03020.1.cds4NO10G03020.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G03020.1.cds5NO10G03020.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G03020.1.cds6NO10G03020.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G03020.1 ID=NO10G03020.1|Name=NO10G03020.1|organism=Nannochloropsis oceanica|type=mRNA|length=1200bp
ATGACCCCGCCCAACGCCCAAGGTCGGCAGCCTCCCGCAGGGTCCCGGGA
GGCCTACGGCGGCGTCCGCCTCGAGGCCATGACTGGCGGTGATCGTATCG
TCAACGACCTTGCTGCCGCTGCAGGAAATGCCGGTGGTGGTAGAAGACGG
ATGCATGGATCATGGGCCCCAAATCCCCCAACAGGACCGCAAACAGTCGT
TCAAAAAACAAAGATGGTGCGCAACGCCTGCCACGTACGCAAGGACACTG
TGCGACTTGTCCCTCCTAACTTCCAACCATCAGGGCAAGAGGAATACAGC
AGCAGCAGCAGCATTTGTGGTGGAGGAAGGTTCCACCTCTCCTTCCGGTT
TGATGCTACTGTGCCGTGCAATGTGGCAGTGTTTTGGGTAGCAACTGAGG
GGAAGGACGAGGCAGGTGGACTCTGTCATAAAACCCTCATGTCCGTGGAA
GAAGAGTGGGTGGTGGGCCCGCACCGTTTTGAGGCTGGAGCAAACCAAAT
GTACTCGACGGCGGCCTTGGGGTACCAGGGTGCTGACTTACTGAAAGCCA
GTCTAGAAGGAGAAGGAGGAAGAGGAGTCGCGGGAGGGAAGGTCAAGAGT
AATGAGAAAGAGGATTTAAGTGTGTTCATTGTGTTGAGGCCTTGTGTTGA
GGAGGATGATGATGTAGGTCAGGGGAAGGAGGGAAAAGAAAGAGGGGAAG
TGTTCGCCCAAGTGACGGTAATGAGTTTAACACATAGTGTAAAAATTGTT
GGAAGTGTTGGAGAAAGAAAAGGAAAGGAGGATGCATGGGTAGGGCGGGT
GGTGAAGCAGAAAATTGAGACGCCCGATGGCGTGTTTGTGTTGCAGGATA
TATACGGTATTGCGGGATCGATGGCCAGCGCAGGTGGGGGAGGCAACAGC
GAAAGCGGTTGGAAGGAGGGTGACGATGGCGGTGCTAGTAAAAGTGCGAC
TGCTGAGAAAGAGGAGGTGGAGCAAGAAATAAACCGCGCAGAATGCGTGG
TATGTCTGACGAATAAACGGGAGTTGGCCATATTGCCCTGCAGGCATATG
TGTGTGTGTCGGGCGTGTGCGGCAGAGTGCATCCAGAGCCAGGATAGCCG
GTGTCCGATCTGCAGGAATCCGGCCCATGCGTTGCTGAAATTGACCCTTG
ACGAGGACGACCATTATTGCCGCTCCTCTGCCTCACCACACCAGGCCTAG
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protein sequence of NO10G03020.1

>NO10G03020.1-protein ID=NO10G03020.1-protein|Name=NO10G03020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=400bp
MTPPNAQGRQPPAGSREAYGGVRLEAMTGGDRIVNDLAAAAGNAGGGRRR
MHGSWAPNPPTGPQTVVQKTKMVRNACHVRKDTVRLVPPNFQPSGQEEYS
SSSSICGGGRFHLSFRFDATVPCNVAVFWVATEGKDEAGGLCHKTLMSVE
EEWVVGPHRFEAGANQMYSTAALGYQGADLLKASLEGEGGRGVAGGKVKS
NEKEDLSVFIVLRPCVEEDDDVGQGKEGKERGEVFAQVTVMSLTHSVKIV
GSVGERKGKEDAWVGRVVKQKIETPDGVFVLQDIYGIAGSMASAGGGGNS
ESGWKEGDDGGASKSATAEKEEVEQEINRAECVVCLTNKRELAILPCRHM
CVCRACAAECIQSQDSRCPICRNPAHALLKLTLDEDDHYCRSSASPHQA*
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mRNA from alignment at chr10:840543..842275-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G03020.1 ID=NO10G03020.1|Name=NO10G03020.1|organism=Nannochloropsis oceanica|type=mRNA|length=1733bp|location=Sequence derived from alignment at chr10:840543..842275- (Nannochloropsis oceanica)
ATGACCCCGCCCAACGCCCAAGGTATGTCGTTGCCATAGTGATGGTTTTC
GGCGCCGAAGCCCAACTCCTCTGTTCTCCACCCCCTCTCCAGGTCGGCAG
CCTCCCGCAGGGTCCCGGGAGGCCTACGGCGGCGTCCGCCTCGAGGCCAT
GACTGGCGGTGATCGTATCGTCAACGACCTTGCTGCCGCTGCAGGAAATG
CCGGTGGTGGTAGAAGACGGATGCATGGATCATGGGTACGTGTTGCGTGA
AAACTTTCTCGTCATACGCAGAACCCTAAGAAGCCTTACCCCTCCTCCTC
CCCGCTCTCTCTCCTTCTCTCACACCTCCCATACGCAGGCCCCAAATCCC
CCAACAGGACCGCAAACAGTCGTTCAAAAAACAAAGATGGTGCGCAACGC
CTGCCACGTACGCAAGGACACTGTGCGACTTGTCCCTCCTAACTTCCAAC
CATCAGGGCAAGAGGAATACAGCAGCAGCAGCAGCATTTGTGGTGGAGGA
AGGTTCCACCTCTCCTTCCGGTTTGATGCTACTGTGCCGTGCAATGTGGC
AGTGTTTTGGGTAGCAACTGAGGGGAAGGACGAGGCAGGTGGACTCTGGT
AAGTCTTCATGACAACAAGGGAGAAGCAACACGAAATTCAAATTTATTCA
TCTCGTCCTATCTCCCTGCCTCTTCCTGCCTCCCTCTCACCCTTCCCAGT
CATAAAACCCTCATGTCCGTGGAAGAAGAGTGGGTGGTGGGCCCGCACCG
TTTTGAGGCTGGAGCAAACCAAATGTACTCGACGGCGGCCTTGGGGTACC
AGGGTGCTGACTTACTGAAAGCCAGTCTAGAAGGAGAAGGAGGAAGAGGA
GTCGCGGGAGGGAAGGTCAAGAGTAATGAGAAAGAGGATTTAAGTGTGTT
CATTGTGTTGAGGCCTTGTGTTGAGGAGGATGATGATGTAGGTCAGGGGA
AGGAGGGAAAAGAAAGAGGGGAAGTGTTCGCCCAAGTGACGGTAATGAGT
TTAACACATAGTGTAAAAATTGTTGGAAGTGTTGGAGAAAGAAAAGGAAA
GGAGGATGCATGGGTAGGGCGGGTGGTGAAGCAGAAAATTGAGGTATGAC
GGTGGGAAGTAAGGGTCAGTAAACTTAATGGAAGTGCCAAATTCTGTTTT
TCCCTGACCTGGACCTGGGGCTCATAATTCTCCTTTCCTCCTTTCTCTTT
CTCCTTCCGCCTTACCTTTCTTCCATCCTTCCCTCATTCTTCAGACGCCC
GATGGCGTGTTTGTGTTGCAGGATATATACGGTATTGCGGGATCGATGGC
CAGCGCAGGTGGGGGAGGCAACAGCGAAAGCGGTTGGAAGGAGGGTGACG
ATGGCGGTGCTAGTAAAAGTGCGACTGCTGAGAAAGAGGAGGTGGAGCAA
GAAATAAACCGCGCAGAATGCGTGGTATGTCTGACGAATAAACGGGAGTT
GGCCATATTGCCCTGCAGGCATATGTGTGTGTGTCGGGCGTGTGCGGCAG
AGTGCATCCAGAGCCAGGATAGCCGGTGTCCGATCTGCAGGAATCGTGAG
TTGAGGGAGGGAAGGGGGGAGGGGGGTAAGGGATGGATTTGGGGGGGTGA
GGCATGCACATGGAAGCCGGGACCTTATCTCACACTCGAATACACACTCA
CAGCGGCCCATGCGTTGCTGAAATTGACCCTTGACGAGGACGACCATTAT
TGCCGCTCCTCTGCCTCACCACACCAGGCCTAG
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Coding sequence (CDS) from alignment at chr10:840543..842275-

>NO10G03020.1 ID=NO10G03020.1|Name=NO10G03020.1|organism=Nannochloropsis oceanica|type=CDS|length=1200bp|location=Sequence derived from alignment at chr10:840543..842275- (Nannochloropsis oceanica)
ATGACCCCGCCCAACGCCCAAGGTCGGCAGCCTCCCGCAGGGTCCCGGGA
GGCCTACGGCGGCGTCCGCCTCGAGGCCATGACTGGCGGTGATCGTATCG
TCAACGACCTTGCTGCCGCTGCAGGAAATGCCGGTGGTGGTAGAAGACGG
ATGCATGGATCATGGGCCCCAAATCCCCCAACAGGACCGCAAACAGTCGT
TCAAAAAACAAAGATGGTGCGCAACGCCTGCCACGTACGCAAGGACACTG
TGCGACTTGTCCCTCCTAACTTCCAACCATCAGGGCAAGAGGAATACAGC
AGCAGCAGCAGCATTTGTGGTGGAGGAAGGTTCCACCTCTCCTTCCGGTT
TGATGCTACTGTGCCGTGCAATGTGGCAGTGTTTTGGGTAGCAACTGAGG
GGAAGGACGAGGCAGGTGGACTCTGTCATAAAACCCTCATGTCCGTGGAA
GAAGAGTGGGTGGTGGGCCCGCACCGTTTTGAGGCTGGAGCAAACCAAAT
GTACTCGACGGCGGCCTTGGGGTACCAGGGTGCTGACTTACTGAAAGCCA
GTCTAGAAGGAGAAGGAGGAAGAGGAGTCGCGGGAGGGAAGGTCAAGAGT
AATGAGAAAGAGGATTTAAGTGTGTTCATTGTGTTGAGGCCTTGTGTTGA
GGAGGATGATGATGTAGGTCAGGGGAAGGAGGGAAAAGAAAGAGGGGAAG
TGTTCGCCCAAGTGACGGTAATGAGTTTAACACATAGTGTAAAAATTGTT
GGAAGTGTTGGAGAAAGAAAAGGAAAGGAGGATGCATGGGTAGGGCGGGT
GGTGAAGCAGAAAATTGAGACGCCCGATGGCGTGTTTGTGTTGCAGGATA
TATACGGTATTGCGGGATCGATGGCCAGCGCAGGTGGGGGAGGCAACAGC
GAAAGCGGTTGGAAGGAGGGTGACGATGGCGGTGCTAGTAAAAGTGCGAC
TGCTGAGAAAGAGGAGGTGGAGCAAGAAATAAACCGCGCAGAATGCGTGG
TATGTCTGACGAATAAACGGGAGTTGGCCATATTGCCCTGCAGGCATATG
TGTGTGTGTCGGGCGTGTGCGGCAGAGTGCATCCAGAGCCAGGATAGCCG
GTGTCCGATCTGCAGGAATCCGGCCCATGCGTTGCTGAAATTGACCCTTG
ACGAGGACGACCATTATTGCCGCTCCTCTGCCTCACCACACCAGGCCTAG
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Synonyms
Publications