NO10G02750, NO10G02750 (gene) Nannochloropsis oceanica

Overview
NameNO10G02750
Unique NameNO10G02750
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2367
Alignment locationchr10:756596..758962 +

Link to JBrowse

Properties
Property NameValue
DescriptionPDZ domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:756596..758962 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036034PDZ_sf
IPR001849PH_domain
Homology
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BLAST of NO10G02750 vs. NCBI_GenBank
Match: EWM25485.1 (PDZ domain protein [Nannochloropsis gaditana])

HSP 1 Score: 141.7 bits (356), Expect = 9.500e-30
Identity = 155/459 (33.77%), Postives = 194/459 (42.27%), Query Frame = 0 
Query:  196 DEGEGREIGEGGGLHVGDSVVLVPVGGRNGGGGRLVARKAEDKDEGLHVPPFWEDASFTSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLSPFYHLYLSQDEEEINEHLQHPLKKQQQHISLYITISSLVHA-----------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTILFQESDLGITIKRTPSGQAHVLRLLPHTRTNRNGVEPGDIILMIENVSETKFENSSSKSKPMAKWDLRERVLDSDSWGEMVEFIKTSPRPLKVTVVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPAPPLYDMSLLERHLDFVARRHLRPTGRQFEPXXXXXXXXXXXXXXXLDAYGKRSLIYRGSLRLFQEGKLWGSAWHHREAYLFTDMLVLALPPSLP----PSR--GGRAEVEACWGLATCKLREEGGREGGR 638
            +E EG     GG L VGD+ VLVPVGG      RLVAR    KD  L  P     AS   S             XXXXXXXXXXXXXXXXXXXX      SP Y L L   E+E  +    P         L++ I+S + A                                             ++LFQ+ DLG+++ RTPSG+A VLRL PHT+ +RNG+  GD+I+ +                    WDL ++VLDS+SW  MV++IKTSPRPL++TV R                                        SP PP   + L              P G + +P                 A   R L++RG LRL+QEG+LWG +W  R+AYLF+D  VLA PPS P    PSR    R      W  A+   R  GGR  GR
Sbjct:  235 NEEEGEREDAGGALRVGDAFVLVPVGGEGLESRRLVARIPGYKDM-LRSP-----ASVLGSSSSPSHSHRGIDPXXXXXXXXXXXXXXXXXXXXRPVAERSPVYELCLRCGEKEGMDVGSEP----PPSYPLFVRIASRLPAGASLPPIPPADPGALGVALPHPPSPSANPRHGEEQGSREGADSVVSVLFQQGDLGLSLARTPSGRARVLRLQPHTQADRNGIRAGDVIIQLNE-----------------DWDLSKQVLDSESWAAMVQYIKTSPRPLRLTVAR---KRPTPSRPSPPQPFLSDPSEGTDEQAGARTASPCATPSPRPPGAALCL-----------PACPPGLRADPTSALPS----------PARSSRKLLFRGPLRLWQEGRLWGGSWEERDAYLFSDAFVLAFPPSPPLLAAPSRLQLWRLTHPGPWPPASSGRR--GGRRAGR 640
The following BLAST results are available for this feature:
BLAST of NO10G02750 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25485.19.500e-3033.77PDZ domain protein [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001145NSK001145Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G02750.1NO10G02750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100236g1gene5014Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G02750.1NO10G02750.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G02750 ID=NO10G02750|Name=NO10G02750|organism=Nannochloropsis oceanica|type=gene|length=2367bp
ATGGGTGACTGGATCCAACTCCACTTTAATGCAGCGCCCTCAGGACATTC
CTCCCCCTCCTCTCTACTTCCACTCGCTCTCTGTCCTCCCACGGCTGCAG
CCAATGCACCCGTCACTCTCATAAGTACTTCCACACCCGTCGGCACCGCC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCAGCAGCAG
CGGCAGCAGTAACAACGACGACGAGTTTGCCGCTGTCTGCTTCCAGAACT
ACAGCAGCACAAAAGATACGCCTGGACAACGGAACAAAAGGTTAGAGATC
GGGGATGTGATTACCATAAGTATGGCTGGTGGGTTCTTGGCTTGGGCTAG
TACTACTACGTCTACTACTCCTCCTTCTACGAGTACTACTGCACCACCAC
CACCATCTACAACAACTCCATCAACTATTGATAGTACTGCTGCTGCTGCT
ACGACAGAGAAAGGATTTGAGCAGCAGCAGCAACAACAACAACAACTGCA
ATGGGTGGATGAAGACGACGTAGAAGAGAAGAAACAGGTGTTTGTGGTAG
CAGCACCTCCCTCGACTGCTACAGCGCCAGTGGAAGATGAGGGGGAAGGA
AGGGAGATAGGAGAAGGAGGAGGACTGCATGTGGGAGATTCGGTAGTTCT
TGTGCCAGTGGGCGGGAGAAATGGAGGAGGGGGAAGATTGGTGGCTCGAA
AAGCAGAAGACAAAGACGAGGGGTTGCATGTACCGCCTTTTTGGGAGGAT
GCCTCCTTCACTTCCTCCTCTTCTACTTTTTCCCTTTCCAACGGCTACAA
CAAGAACAGGGATAGATCGCAGCCCTCGTCCCCCTCTCCCTCCCTTTCCT
TTCATTCCCCAAAGACCCCTCCCCCTCCTCGTCTCTCTCCCTTCTACCAC
CTCTACCTCAGCCAAGACGAAGAGGAAATCAACGAGCATCTACAGCATCC
ACTGAAGAAGCAGCAGCAGCACATCAGCCTCTATATCACCATATCCTCCC
TCGTTCACGCCGTCGCCTCCCCCCCTCCCCCTCTCCCGCCGTCTCCCCAC
TCAAGCGTCATCAGCAGCACTAAGAGCAGCAGCAGCAGTTATTACGGCAA
TAGCACTACACACACCATTCTCTTCCAAGAAAGCGATTTGGGGATCACAA
TCAAACGGACTCCCTCGGGACAAGCCCACGTCTTGCGCCTCCTCCCTCAC
ACCCGAACGAATCGCAATGGGGTCGAACCGGGTGACATCATTCTAATGAT
CGAAAACGTGAGTGAAACAAAGTTTGAGAATTCAAGTTCGAAATCAAAAC
CAATGGCAAAGTGGGATCTGCGTGAAAGAGTGCTGGATAGTGATAGTTGG
GGAGAGATGGTTGAGTTCATAAAGACAAGCCCAAGGCCCCTGAAAGTGAC
AGTGGTGCGGAAACACAAGAGGGAGGAAAGGAGGAAGAACGATGCTTCCT
CCTCCCCTTCTTCAGCCTCACCTCCCTCGGGAAGAGGAGAAAATGAGGGG
GGGGGTTCTGCTTCGTCTTCTCCTCCCCTCTCCCCCGCCCCCCCCCTCTA
CGACATGAGCCTCCTCGAGCGCCACCTGGATTTCGTGGCCCGGCGACACC
TCCGTCCAACCGGCAGGCAGTTCGAACCCTACACCCCCTCCTCGCCCTCG
TCCTCTTCCTCGCCTTCCCTTCCTCTGGATGCGTATGGGAAGCGTTCCTT
GATATATCGCGGGTCCCTTCGTCTCTTTCAAGAAGGGAAGCTGTGGGGCA
GTGCATGGCACCACCGTGAAGCTTACCTCTTCACGGACATGCTCGTCCTC
GCCCTCCCTCCCTCCCTCCCTCCCTCCCGTGGCGGGCGTGCGGAGGTGGA
GGCGTGTTGGGGCTTGGCGACATGTAAGTTGAGGGAGGAAGGCGGAAGGG
AGGGAGGGCGGGCTGGCACCGACCCCCTTTCGCTTGCTCGTCGGTGTAGT
TTTGAGGTGGTTACCCCGCATGGCACGTATGTGTTGTGTGCAGCGTCTAA
AGCCGAACATGCAGCATGGATCCGTCTTATTTATGAGGCGATGGCGGCGG
TGGCGAGGAAGGGCGGGAGCGAGGGGGAGAGGGTGGGGATGAGGCATCAT
TTGGTTTTGGATAGTCTGCATTGGTGCGTGGTAAATGGACGGGTAGAGGA
CGCGAGGGTCCTTTTGCGGCAGCATCAGCAGCAGCAGCAGCAGCAGGAGG
AGGAGGAGGAGGAGGAGGAGGGGGGGGAAGAGAGGAGGCAGGGAAGGAAG
GAAGGAGGGGTAGCTGTGAAGGGGATTGGGTCGATGTCGGTAGGCCTGAT
GATCCTGCTGACGGCACAGGCCCTCCCTCCCCCCGAGCCCTCTCCCGTCC
TCCCTCCCTTAGCCTAG
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protein sequence of NO10G02750.1

>NO10G02750.1-protein ID=NO10G02750.1-protein|Name=NO10G02750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=789bp
MGDWIQLHFNAAPSGHSSPSSLLPLALCPPTAAANAPVTLISTSTPVGTA
SSSSSSSSSSSSSGSSSGSSNNDDEFAAVCFQNYSSTKDTPGQRNKRLEI
GDVITISMAGGFLAWASTTTSTTPPSTSTTAPPPPSTTTPSTIDSTAAAA
TTEKGFEQQQQQQQQLQWVDEDDVEEKKQVFVVAAPPSTATAPVEDEGEG
REIGEGGGLHVGDSVVLVPVGGRNGGGGRLVARKAEDKDEGLHVPPFWED
ASFTSSSSTFSLSNGYNKNRDRSQPSSPSPSLSFHSPKTPPPPRLSPFYH
LYLSQDEEEINEHLQHPLKKQQQHISLYITISSLVHAVASPPPPLPPSPH
SSVISSTKSSSSSYYGNSTTHTILFQESDLGITIKRTPSGQAHVLRLLPH
TRTNRNGVEPGDIILMIENVSETKFENSSSKSKPMAKWDLRERVLDSDSW
GEMVEFIKTSPRPLKVTVVRKHKREERRKNDASSSPSSASPPSGRGENEG
GGSASSSPPLSPAPPLYDMSLLERHLDFVARRHLRPTGRQFEPYTPSSPS
SSSSPSLPLDAYGKRSLIYRGSLRLFQEGKLWGSAWHHREAYLFTDMLVL
ALPPSLPPSRGGRAEVEACWGLATCKLREEGGREGGRAGTDPLSLARRCS
FEVVTPHGTYVLCAASKAEHAAWIRLIYEAMAAVARKGGSEGERVGMRHH
LVLDSLHWCVVNGRVEDARVLLRQHQQQQQQQEEEEEEEEGGEERRQGRK
EGGVAVKGIGSMSVGLMILLTAQALPPPEPSPVLPPLA*
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Synonyms
Publications