NO10G02570, NO10G02570 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO10G02570
Unique Name	NO10G02570
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	4144
Alignment location	chr10:702531..706674 -

Link to JBrowse

Properties


Property Name	Value
Description	tRNA-splicing ligase RtcB homolog

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr10	genome	chr10:702531..706674 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
PXD016054	2021-01-14
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
PXD010030	2020-03-16
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PXD008721	2019-04-30
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006396	RNA processing
GO:0006139	nucleobase-containing compound metabolic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0008452	RNA ligase activity
GO:0003824	catalytic activity
GO:0000166	nucleotide binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036025	RtcB-like_sf
IPR001233	RtcB

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular

Homology

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BLAST of NO10G02570 vs. NCBI_GenBank
Match: EWM25480.1 (trna-splicing ligase [Nannochloropsis gaditana])

HSP 1 Score: 930.2 bits (2403), Expect = 2.700e-267
Identity = 462/511 (90.41%), Postives = 486/511 (95.11%), Query Frame = 0

Query:    1 MAEGSSVVRTFDEEMKYIHRETPTRFRIDKGCVPNMRVEGAFYVNSKLEQLMFDELKQHITAGGVGGFLPAVKQIANVAALPGIVGRSIGLPDVHSGYGFAIGNVAAFDMSDPEAIVSPGGVGFDINCGVRLIRTNLNEKDIAPLKEELTQSLFDHIPVGVGSKGVIPTSAGDLEAALEMGMDWSLREGYAWAEDKEHCEEYGRMLQADPTKVGARAKKRGLPQLGTLGAGNHYAEIQVVEEIDDERAAARMGIDQIGQVCIMIHSGSRGLGHQVATDALVEMERAMARDGIHTNDRQLACARIQSKEGQNYLAAMAAAANFAWVNRSSMTFLTRQAFAKMFKTSPDDLDMHVIYDVSHNIAKVEEHMFQGKPKRLLVHRKGSTRAFPPHHPLIPVDYQFTGQPVLIGGTMGTCSYVLTGTDQGMEETFGSTCHGAGRAQSRNKSRKNLEYTEVLDALAKKGISIRVASPKLVMEEAPESYKDVTQVVDTCHDAGVSRKAIRLRPIAVVKG 512
            MA G SVVRTF+EEM ++HRETPTRFRIDKGCVPNM+VEGAFYVN+KLE+LMF ELKQH TAGGVGGFLPAVKQIANVAALPGIVGRSIGLPDVHSGYGFAIGNVAAF ++D EAIVSPGGVGFDINCGVRLIRTNL E+D+   +E+LTQSLFDHIPVGVGSKGVIPTSA DLEAALEMGMDWSLREGYAWAED EHCEE GRM QADPTKVG RAKKRGLPQLGTLGAGNHYAEIQVVEEI D RAAARMGIDQIGQVC+MIHSGSRGLGHQVATDALVEMERAMARDGI TNDRQLACARIQS EGQNYLAAMAAAANFAWVNRSSMTFLTRQAFAKMF+ +PDDLDMHVIYDVSHNIAKVEEHM+QG+PK LLVHRKGSTRAFPP+HPLIPVDYQFTGQPVLIGGTMGTCSYVLTGTD+G+EETFGSTCHGAGRAQSRNKSRK LEYTEVL AL +KGISIRVASPKLVMEEAPESYKDVTQVVDTCH+AG+SRKAI+LRPIAVVKG
Sbjct:    1 MANG-SVVRTFEEEMGFLHRETPTRFRIDKGCVPNMKVEGAFYVNTKLEELMFAELKQHTTAGGVGGFLPAVKQIANVAALPGIVGRSIGLPDVHSGYGFAIGNVAAFAVADTEAIVSPGGVGFDINCGVRLIRTNLTEEDVRGKREKLTQSLFDHIPVGVGSKGVIPTSAADLEAALEMGMDWSLREGYAWAEDNEHCEENGRMRQADPTKVGMRAKKRGLPQLGTLGAGNHYAEIQVVEEIHDPRAAARMGIDQIGQVCVMIHSGSRGLGHQVATDALVEMERAMARDGILTNDRQLACARIQSPEGQNYLAAMAAAANFAWVNRSSMTFLTRQAFAKMFEATPDDLDMHVIYDVSHNIAKVEEHMYQGRPKTLLVHRKGSTRAFPPNHPLIPVDYQFTGQPVLIGGTMGTCSYVLTGTDKGLEETFGSTCHGAGRAQSRNKSRKTLEYTEVLAALEEKGISIRVASPKLVMEEAPESYKDVTQVVDTCHEAGISRKAIKLRPIAVVKG 510

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BLAST of NO10G02570 vs. NCBI_GenBank
Match: XP_003384129.1 (PREDICTED: tRNA-splicing ligase RtcB homolog [Amphimedon queenslandica])

HSP 1 Score: 839.0 bits (2166), Expect = 8.100e-240
Identity = 405/507 (79.88%), Postives = 456/507 (89.94%), Query Frame = 0

Query:    5 SSVVRTFDEEMKYIHRETPTRFRIDKGCVPNMRVEGAFYVNSKLEQLMFDELKQHITAGGVGGFLPAVKQIANVAALPGIVGRSIGLPDVHSGYGFAIGNVAAFDMSDPEAIVSPGGVGFDINCGVRLIRTNLNEKDIAPLKEELTQSLFDHIPVGVGSKGVIPTSAGDLEAALEMGMDWSLREGYAWAEDKEHCEEYGRMLQADPTKVGARAKKRGLPQLGTLGAGNHYAEIQVVEEIDDERAAARMGIDQIGQVCIMIHSGSRGLGHQVATDALVEMERAMARDGIHTNDRQLACARIQSKEGQNYLAAMAAAANFAWVNRSSMTFLTRQAFAKMFKTSPDDLDMHVIYDVSHNIAKVEEHMFQGKPKRLLVHRKGSTRAFPPHHPLIPVDYQFTGQPVLIGGTMGTCSYVLTGTDQGMEETFGSTCHGAGRAQSRNKSRKNLEYTEVLDALAKKGISIRVASPKLVMEEAPESYKDVTQVVDTCHDAGVSRKAIRLRPIAVVKG 512
            +S VRT+DEE  Y+ + +   +RI KG VPNM+VEG FYVN  L+ LMFDEL+ H ++GGVGGFLPAVKQI NVAALPGIVG+SIGLPDVHSGYGFAIGN+AAFDMSDPEA+VSPGGVGFDINCGVRL+RTNL +KDI P+KE+L QSLFDHIPVGVGSKGVIP +A DLE+ALEMGMDW+LREGY WAEDKEHCEEYGRMLQADP+KV  RAKKRGLPQLGTLGAGNHYAEIQVVEEI D+ AAA+MGI++  QVC+MIHSGSRGLGHQVATDALVEME+AM RD I  NDRQLACA+I+SKEG+NYL  MAAAAN+AWVNRSSMTFLTRQAFAKMFK++PDDLDMH+IYDVSHNIAKVE+H+  G+ K LLVHRKGSTRAFPPHHPLIPVDYQ TGQPVLIGGTMGTCSYVLTGTD+G  ETFGSTCHGAGRA SR KSR+ L Y EVL++LAK+GI+IRVASPKLVMEEAP+SYK+VT VV+TCH AG+S KA +L+PIAV+KG
Sbjct:    2 ASAVRTYDEECSYLEKISNCSYRIKKGFVPNMKVEGLFYVNDHLKDLMFDELRHHCSSGGVGGFLPAVKQIGNVAALPGIVGKSIGLPDVHSGYGFAIGNMAAFDMSDPEAVVSPGGVGFDINCGVRLLRTNLFKKDIEPVKEQLAQSLFDHIPVGVGSKGVIPMTARDLESALEMGMDWTLREGYGWAEDKEHCEEYGRMLQADPSKVSQRAKKRGLPQLGTLGAGNHYAEIQVVEEIFDKHAAAKMGIEEKEQVCVMIHSGSRGLGHQVATDALVEMEKAMKRDNIEVNDRQLACAKIKSKEGENYLKGMAAAANYAWVNRSSMTFLTRQAFAKMFKSTPDDLDMHIIYDVSHNIAKVEQHIVSGREKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTDKGFTETFGSTCHGAGRALSRAKSRRTLGYEEVLESLAKQGIAIRVASPKLVMEEAPQSYKNVTDVVETCHSAGISNKAFKLKPIAVIKG 508

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BLAST of NO10G02570 vs. NCBI_GenBank
Match: XP_002503505.1 (predicted protein [Micromonas commoda] >C1E9Y5.1 RecName: Full=tRNA-splicing ligase RtcB homolog >ACO64763.1 predicted protein [Micromonas commoda])

HSP 1 Score: 837.8 bits (2163), Expect = 1.800e-239
Identity = 400/503 (79.52%), Postives = 454/503 (90.26%), Query Frame = 0

Query:    9 RTFDEEMKYIHRETPTRFRIDKGCVPNMRVEGAFYVNSKLEQLMFDELKQHITAGGVGGFLPAVKQIANVAALPGIVGRSIGLPDVHSGYGFAIGNVAAFDMSDPEAIVSPGGVGFDINCGVRLIRTNLNEKDIAPLKEELTQSLFDHIPVGVGSKGVIPTSAGDLEAALEMGMDWSLREGYAWAEDKEHCEEYGRMLQADPTKVGARAKKRGLPQLGTLGAGNHYAEIQVVEEIDDERAAARMGIDQIGQVCIMIHSGSRGLGHQVATDALVEMERAMARDGIHTNDRQLACARIQSKEGQNYLAAMAAAANFAWVNRSSMTFLTRQAFAKMFKTSPDDLDMHVIYDVSHNIAKVEEHMFQGKPKRLLVHRKGSTRAFPPHHPLIPVDYQFTGQPVLIGGTMGTCSYVLTGTDQGMEETFGSTCHGAGRAQSRNKSRKNLEYTEVLDALAKKGISIRVASPKLVMEEAPESYKDVTQVVDTCHDAGVSRKAIRLRPIAVVKG 512
            RT+ +EM+++ R TPT++R+ +G VPNMRV G FYVN  LE LMFDEL+QH+  G VGGFLPAVKQ+ANVA LPGIV +SI LPDVHSGYGFAIGNVAAFDMSDP A+VSPGGVGFDINCGVR++RTNL+E+D+  +KE+L QSLFDHIPVGVGS+G+IPTS   LEAALEMGMDWSLREGYAWAEDKEHCEEYGRML ADP KV ARAKKRGLPQ+GTLGAGNHYAEIQVV+EI D+ AA +MGI+++GQV +MIHSGSRGLGHQVATDAL EMERAMARDGI  NDRQLACA+I S EGQNYL+AM+ AAN+AWVNRSSMTFL RQAFAKMF  +PDDLDMHV+YDVSHNIAK+EEH+  G+ K LLVHRKGSTRAFPPHHPLIPVDYQ+TGQPVLIGGTMGTCSY+LTGT++GMEETFGSTCHGAGRA+SRN SR  L+YTEVL+ L  KGI+IRVASPKLVMEEAPESYKDVT+VV+TCHDAG+S+KA++LRPIAVVKG
Sbjct:   11 RTYAQEMEFLERVTPTQWRVREGFVPNMRVPGVFYVNKHLETLMFDELRQHVDRGDVGGFLPAVKQLANVACLPGIVSKSIALPDVHSGYGFAIGNVAAFDMSDPNAVVSPGGVGFDINCGVRVVRTNLHERDVTDIKEKLAQSLFDHIPVGVGSQGIIPTSPAGLEAALEMGMDWSLREGYAWAEDKEHCEEYGRMLNADPNKVSARAKKRGLPQMGTLGAGNHYAEIQVVDEIFDKHAADKMGIERLGQVMVMIHSGSRGLGHQVATDALTEMERAMARDGILVNDRQLACAKISSPEGQNYLSAMSCAANYAWVNRSSMTFLCRQAFAKMFDQTPDDLDMHVVYDVSHNIAKIEEHVVDGELKTLLVHRKGSTRAFPPHHPLIPVDYQYTGQPVLIGGTMGTCSYILTGTEKGMEETFGSTCHGAGRARSRNNSRNKLDYTEVLEKLKTKGIAIRVASPKLVMEEAPESYKDVTEVVNTCHDAGISKKAVKLRPIAVVKG 513

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BLAST of NO10G02570 vs. NCBI_GenBank
Match: XP_004363837.1 (hypothetical protein CAOG_02998 [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 830.9 bits (2145), Expect = 2.200e-237
Identity = 406/507 (80.08%), Postives = 453/507 (89.35%), Query Frame = 0

Query:    5 SSVVRTFDEEMKYIHRETPTRFRIDKGCVPNMRVEGAFYVNSKLEQLMFDELKQHITAGGVGGFLPAVKQIANVAALPGIVGRSIGLPDVHSGYGFAIGNVAAFDMSDPEAIVSPGGVGFDINCGVRLIRTNLNEKDIAPLKEELTQSLFDHIPVGVGSKGVIPTSAGDLEAALEMGMDWSLREGYAWAEDKEHCEEYGRMLQADPTKVGARAKKRGLPQLGTLGAGNHYAEIQVVEEIDDERAAARMGIDQIGQVCIMIHSGSRGLGHQVATDALVEMERAMARDGIHTNDRQLACARIQSKEGQNYLAAMAAAANFAWVNRSSMTFLTRQAFAKMFKTSPDDLDMHVIYDVSHNIAKVEEHMFQGKPKRLLVHRKGSTRAFPPHHPLIPVDYQFTGQPVLIGGTMGTCSYVLTGTDQGMEETFGSTCHGAGRAQSRNKSRKNLEYTEVLDALAKKGISIRVASPKLVMEEAPESYKDVTQVVDTCHDAGVSRKAIRLRPIAVVKG 512
            S ++R++++E KYI R +PT+FRI KG V NM+V+G FYVN  L++LMFDEL+Q   + GVGGFLPAVKQIANVAALPGIVGRSIGLPD+HSGYGFAIGN+AAFDM+DPEAIVSPGGVGFDINCGVRLIRTNL EK++ P+KEEL Q+LFDHIPVGVGSKGVIP +  +LE ALEMGMDWSLREGYAWAEDKEHCEEYGRMLQA+P  V  RAKKRGLPQLGTLGAGNHY EIQVV+EI D  AA +MGIDQ GQVCIM+HSGSRGLGHQVATD+LV ME+AM RDGI  NDRQLACARIQSKEGQ+YL  MAAAAN+AWVNRSSMTFLTRQAFAK+F ++PDDLDMHVIYDVSHNIAKVEEHM       LLVHRKGSTRAFPPHHPLIPVDYQ  GQPVLIGGTMGTCS+VLTGT++GM ETFGSTCHGAGRAQSRNKSR+ L+Y +VLD+LA+KGISIRVASPKLV EEAPESYKDV  VV+TCH AG+S+KAI+LRPIAV+KG
Sbjct:   13 SGILRSYEDECKYIERVSPTQFRIKKGFVHNMKVDGCFYVNQHLQELMFDELQQFSDSRGVGGFLPAVKQIANVAALPGIVGRSIGLPDIHSGYGFAIGNMAAFDMNDPEAIVSPGGVGFDINCGVRLIRTNLTEKEVGPVKEELAQALFDHIPVGVGSKGVIPMTMHNLEEALEMGMDWSLREGYAWAEDKEHCEEYGRMLQANPAMVSQRAKKRGLPQLGTLGAGNHYCEIQVVDEIYDAHAARKMGIDQKGQVCIMVHSGSRGLGHQVATDSLVSMEKAMRRDGIEVNDRQLACARIQSKEGQHYLQGMAAAANYAWVNRSSMTFLTRQAFAKIFNSTPDDLDMHVIYDVSHNIAKVEEHMVD---VTLLVHRKGSTRAFPPHHPLIPVDYQLIGQPVLIGGTMGTCSFVLTGTEKGMLETFGSTCHGAGRAQSRNKSRRTLDYQDVLDSLAQKGISIRVASPKLVTEEAPESYKDVIDVVETCHQAGISKKAIKLRPIAVIKG 516

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BLAST of NO10G02570 vs. NCBI_GenBank
Match: XP_003055630.1 (predicted protein [Micromonas pusilla CCMP1545] >C1MI97.1 RecName: Full=tRNA-splicing ligase RtcB homolog >EEH60882.1 predicted protein [Micromonas pusilla CCMP1545])

HSP 1 Score: 830.5 bits (2144), Expect = 2.900e-237
Identity = 396/503 (78.73%), Postives = 450/503 (89.46%), Query Frame = 0

Query:    9 RTFDEEMKYIHRETPTRFRIDKGCVPNMRVEGAFYVNSKLEQLMFDELKQHITAGGVGGFLPAVKQIANVAALPGIVGRSIGLPDVHSGYGFAIGNVAAFDMSDPEAIVSPGGVGFDINCGVRLIRTNLNEKDIAPLKEELTQSLFDHIPVGVGSKGVIPTSAGDLEAALEMGMDWSLREGYAWAEDKEHCEEYGRMLQADPTKVGARAKKRGLPQLGTLGAGNHYAEIQVVEEIDDERAAARMGIDQIGQVCIMIHSGSRGLGHQVATDALVEMERAMARDGIHTNDRQLACARIQSKEGQNYLAAMAAAANFAWVNRSSMTFLTRQAFAKMFKTSPDDLDMHVIYDVSHNIAKVEEHMFQGKPKRLLVHRKGSTRAFPPHHPLIPVDYQFTGQPVLIGGTMGTCSYVLTGTDQGMEETFGSTCHGAGRAQSRNKSRKNLEYTEVLDALAKKGISIRVASPKLVMEEAPESYKDVTQVVDTCHDAGVSRKAIRLRPIAVVKG 512
            RT+ +EM ++ R +  ++ +++G VPNMRV G FYVN  LE LMF+EL+QH+ +GG GGFLPAVKQ+ANVA LPGIVG+SI +PDVHSGYGF IGNVAAFDMSDP A+VSPGGVGFDINCGVR++RTNL E D+A +KE+L Q+LFDHIPVGVGS+G+IPTSA  LE+ALEMGMDWSLREGYAWAEDKEHCEEYGRML ADP KV ARAKKRGLPQ+GTLGAGNHYAEIQVV+EI D  AA +MG+D +GQV +MIHSGSRGLGHQVATDAL EMERAMARDGI TNDRQLACARI S EGQNYL+AM+ AAN+AWVNRSSMTFL RQAFAKMF ++PDDLDMHV+YDVSHNIAK+EEHM  GK K LLVHRKGSTRAFPPHHPLIPVDYQ+TGQPV+IGGTMGTCSY+LTGT +GM+ETFGSTCHGAGRA+SRN SR  L+Y EVL+ L  KGISIRVASPKLVMEEAPESYKDVT+VV+TCHDAG+S+KA++LRPIAVVKG
Sbjct:    5 RTYQQEMAFLSRVSANQWIVNEGFVPNMRVPGTFYVNKHLETLMFEELQQHVDSGGHGGFLPAVKQLANVACLPGIVGKSIAMPDVHSGYGFCIGNVAAFDMSDPAAVVSPGGVGFDINCGVRVVRTNLMESDVADVKEKLAQALFDHIPVGVGSQGIIPTSAAGLESALEMGMDWSLREGYAWAEDKEHCEEYGRMLTADPNKVSARAKKRGLPQMGTLGAGNHYAEIQVVDEIFDAHAAEKMGVDAVGQVMVMIHSGSRGLGHQVATDALTEMERAMARDGIETNDRQLACARINSTEGQNYLSAMSCAANYAWVNRSSMTFLCRQAFAKMFDSTPDDLDMHVVYDVSHNIAKIEEHMVDGKLKTLLVHRKGSTRAFPPHHPLIPVDYQYTGQPVMIGGTMGTCSYILTGTQKGMDETFGSTCHGAGRARSRNNSRNKLDYAEVLENLKTKGISIRVASPKLVMEEAPESYKDVTEVVNTCHDAGISKKAVKLRPIAVVKG 507

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BLAST of NO10G02570 vs. NCBI_GenBank
Match: XP_018911068.1 (PREDICTED: tRNA-splicing ligase RtcB homolog isoform X1 [Bemisia tabaci])

HSP 1 Score: 830.1 bits (2143), Expect = 3.800e-237
Identity = 401/505 (79.41%), Postives = 452/505 (89.50%), Query Frame = 0

Query:    7 VVRTFDEEMKYIHRETPTRFRIDKGCVPNMRVEGAFYVNSKLEQLMFDELKQHITAGGVGGFLPAVKQIANVAALPGIVGRSIGLPDVHSGYGFAIGNVAAFDMSDPEAIVSPGGVGFDINCGVRLIRTNLNEKDIAPLKEELTQSLFDHIPVGVGSKGVIPTSAGDLEAALEMGMDWSLREGYAWAEDKEHCEEYGRMLQADPTKVGARAKKRGLPQLGTLGAGNHYAEIQVVEEIDDERAAARMGIDQIGQVCIMIHSGSRGLGHQVATDALVEMERAMARDGIHTNDRQLACARIQSKEGQNYLAAMAAAANFAWVNRSSMTFLTRQAFAKMFKTSPDDLDMHVIYDVSHNIAKVEEHMFQGKPKRLLVHRKGSTRAFPPHHPLIPVDYQFTGQPVLIGGTMGTCSYVLTGTDQGMEETFGSTCHGAGRAQSRNKSRKNLEYTEVLDALAKKGISIRVASPKLVMEEAPESYKDVTQVVDTCHDAGVSRKAIRLRPIAVVKG 512
            VVR ++EE+KY+ + TP  +RI KG  PNM VEG FYVN+ LE+LMFDEL+     G VGGFLP +KQIANVAALPGIVG+S+GLPDVHSGYGFAIGN+AAFD +DP+++VSPGGVGFDINCGVRL+RTNL EKD+ P+KE+L QS+FDHIPVGVGSKG+IP +A DLE ALEMGMDWSLREGY WAEDKEHCEEYGRML ADP+KV  RAKKRGLPQLGTLGAGNHYAEIQVVEEI D+ AA +MGI++ GQ+C+MIHSGSRG GHQVATDALV+ME+AM RD I TNDRQLACARI SKEGQ+YL +M+AAANFAWVNRSSMTFL+RQAFAK F T+PDDLDMHVIYDVSHNIAK EEHM  GKP+ LLVHRKGSTRAFPPHHPLIPVDYQ TGQPVLIGGTMGTCSYVLTGT+QGM+ETFGSTCHGAGRA SR KSR+NL+YTEVL  L ++GISIRVASPKLVMEEAPESYK+VT VVDTCH AG+S+K+I+LRPIAV+KG
Sbjct:    2 VVRQYNEELKYLEKLTPYSWRIKKGFQPNMNVEGIFYVNNHLEKLMFDELRNACRPGMVGGFLPGMKQIANVAALPGIVGKSVGLPDVHSGYGFAIGNMAAFDANDPKSVVSPGGVGFDINCGVRLLRTNLFEKDVLPVKEQLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQVVEEIYDKWAADKMGIEEKGQICVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARIHSKEGQDYLKSMSAAANFAWVNRSSMTFLSRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKPRTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMQETFGSTCHGAGRALSRAKSRRNLDYTEVLRKLDEQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAAGISKKSIKLRPIAVIKG 506

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BLAST of NO10G02570 vs. NCBI_GenBank
Match: KFB46399.1 (AGAP008147-PA-like protein [Anopheles sinensis])

HSP 1 Score: 829.7 bits (2142), Expect = 4.900e-237
Identity = 400/505 (79.21%), Postives = 446/505 (88.32%), Query Frame = 0

Query:    7 VVRTFDEEMKYIHRETPTRFRIDKGCVPNMRVEGAFYVNSKLEQLMFDELKQHITAGGVGGFLPAVKQIANVAALPGIVGRSIGLPDVHSGYGFAIGNVAAFDMSDPEAIVSPGGVGFDINCGVRLIRTNLNEKDIAPLKEELTQSLFDHIPVGVGSKGVIPTSAGDLEAALEMGMDWSLREGYAWAEDKEHCEEYGRMLQADPTKVGARAKKRGLPQLGTLGAGNHYAEIQVVEEIDDERAAARMGIDQIGQVCIMIHSGSRGLGHQVATDALVEMERAMARDGIHTNDRQLACARIQSKEGQNYLAAMAAAANFAWVNRSSMTFLTRQAFAKMFKTSPDDLDMHVIYDVSHNIAKVEEHMFQGKPKRLLVHRKGSTRAFPPHHPLIPVDYQFTGQPVLIGGTMGTCSYVLTGTDQGMEETFGSTCHGAGRAQSRNKSRKNLEYTEVLDALAKKGISIRVASPKLVMEEAPESYKDVTQVVDTCHDAGVSRKAIRLRPIAVVKG 512
            VVR ++EEMKYI R +P  F I KG  PNM V+G FY NS+LE+LMFDEL+     G  GGFLP VKQIANVAALPGIVGRS+GLPD+HSGYGFAIGN+AAFDMSDP +IVSPGGVGFDINCGVRL+RTNL EKD+ P+KE+L QSLFDHIPVGVGSKG+IP +A DLE ALEMGMDWSLREGY WAEDKEHCEEYGRML ADP+KV  RAKKRGLPQLGTLGAGNHYAEIQVVEEI D+ AA++MGI+++GQ+C+MIHSGSRG GHQVATDALVEME+AM RD I TNDRQLACARI S EGQNYL AM+AAANFAWVNRSSMTFLTRQAFAK F T+PDDLDMHVIYDVSHN+AK+EEHM  G+PK+LLVHRKGSTRAFPPHHPLIPVDYQ TGQPVL+GG+MGTCS+VLTGT+ GM ETFGSTCHGAGR+ SR KSR+NL+Y +VL  L +KGISIRVASPKLV EEAP+SYKDV  VV TCHD G+S KAI+LRPIAV+KG
Sbjct:    2 VVREYNEEMKYIERLSPNSFLIKKGFQPNMNVDGVFYANSRLEKLMFDELRNACRPGMTGGFLPGVKQIANVAALPGIVGRSVGLPDIHSGYGFAIGNMAAFDMSDPNSIVSPGGVGFDINCGVRLLRTNLFEKDVVPVKEQLAQSLFDHIPVGVGSKGIIPMNAHDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRMLNADPSKVSLRAKKRGLPQLGTLGAGNHYAEIQVVEEIYDKYAASKMGIEELGQICVMIHSGSRGFGHQVATDALVEMEKAMKRDKIETNDRQLACARINSPEGQNYLKAMSAAANFAWVNRSSMTFLTRQAFAKQFNTTPDDLDMHVIYDVSHNVAKMEEHMVDGRPKQLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLVGGSMGTCSFVLTGTETGMVETFGSTCHGAGRSLSRAKSRRNLDYKDVLRDLEEKGISIRVASPKLVQEEAPDSYKDVRDVVQTCHDVGISNKAIKLRPIAVIKG 506

[Close]

BLAST of NO10G02570 vs. NCBI_GenBank
Match: XP_013186562.1 (PREDICTED: tRNA-splicing ligase RtcB homolog [Amyelois transitella] >XP_013186563.1 PREDICTED: tRNA-splicing ligase RtcB homolog [Amyelois transitella])

HSP 1 Score: 827.8 bits (2137), Expect = 1.900e-236
Identity = 404/505 (80.00%), Postives = 444/505 (87.92%), Query Frame = 0

Query:    7 VVRTFDEEMKYIHRETPTRFRIDKGCVPNMRVEGAFYVNSKLEQLMFDELKQHITAGGVGGFLPAVKQIANVAALPGIVGRSIGLPDVHSGYGFAIGNVAAFDMSDPEAIVSPGGVGFDINCGVRLIRTNLNEKDIAPLKEELTQSLFDHIPVGVGSKGVIPTSAGDLEAALEMGMDWSLREGYAWAEDKEHCEEYGRMLQADPTKVGARAKKRGLPQLGTLGAGNHYAEIQVVEEIDDERAAARMGIDQIGQVCIMIHSGSRGLGHQVATDALVEMERAMARDGIHTNDRQLACARIQSKEGQNYLAAMAAAANFAWVNRSSMTFLTRQAFAKMFKTSPDDLDMHVIYDVSHNIAKVEEHMFQGKPKRLLVHRKGSTRAFPPHHPLIPVDYQFTGQPVLIGGTMGTCSYVLTGTDQGMEETFGSTCHGAGRAQSRNKSRKNLEYTEVLDALAKKGISIRVASPKLVMEEAPESYKDVTQVVDTCHDAGVSRKAIRLRPIAVVKG 512
            VVR ++EE+KY+ +  P  +RI KG  PNM VEG FYVNS LE+LM DELK     G  GGFLP VKQIANVAALPGIVGRS+GLPDVHSGYGFAIGN+AAFDMSDP++IVSPGGVGFDINCGVRL+RTNL+EKD+ P+KE+L QSLFDHIPVGVGSKG+IP +A D+E ALEMGMDWSLREGY WAEDKEHCEEYGRML ADP+KV  RAKKRGLPQLGTLGAGNHYAEIQVV+EI D  AA +MGI+++GQVC+MIHSGSRG GHQVATDALV+ME+AM RD I TNDRQLACARI S EGQ+YL AMAAAANFAWVNRSSMTFLTRQAFAK FK +PDDLDMHVIYDVSHNIAKVEEHM  GK K LLVHRKGSTRAFPPHHPLIPVDYQ TGQPVLIGGTMGTCSYVLTGT QGM ETFGSTCHGAGRA SR KSR+NL+Y +VL  L   GISIRVASPKLVMEEAPESYK+VT VV+TCH AG+S+K ++LRPIAV+KG
Sbjct:    2 VVRQYNEELKYLEKINPYCWRIKKGFQPNMNVEGVFYVNSTLEKLMLDELKNSCRPGMTGGFLPGVKQIANVAALPGIVGRSVGLPDVHSGYGFAIGNMAAFDMSDPKSIVSPGGVGFDINCGVRLLRTNLHEKDVQPIKEQLAQSLFDHIPVGVGSKGIIPMNARDMEEALEMGMDWSLREGYVWAEDKEHCEEYGRMLNADPSKVSLRAKKRGLPQLGTLGAGNHYAEIQVVDEIFDRYAAGKMGIERVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARINSVEGQDYLKAMAAAANFAWVNRSSMTFLTRQAFAKQFKMAPDDLDMHVIYDVSHNIAKVEEHMVDGKVKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTHQGMTETFGSTCHGAGRALSRAKSRRNLDYKDVLTKLESLGISIRVASPKLVMEEAPESYKNVTDVVNTCHAAGISKKTVKLRPIAVIKG 506

[Close]

BLAST of NO10G02570 vs. NCBI_GenBank
Match: KZS05822.1 (tRNA-splicing ligase RtcB [Daphnia magna])

HSP 1 Score: 827.4 bits (2136), Expect = 2.400e-236
Identity = 404/503 (80.32%), Postives = 448/503 (89.07%), Query Frame = 0

Query:    9 RTFDEEMKYIHRETPTRFRIDKGCVPNMRVEGAFYVNSKLEQLMFDELKQHITAGGVGGFLPAVKQIANVAALPGIVGRSIGLPDVHSGYGFAIGNVAAFDMSDPEAIVSPGGVGFDINCGVRLIRTNLNEKDIAPLKEELTQSLFDHIPVGVGSKGVIPTSAGDLEAALEMGMDWSLREGYAWAEDKEHCEEYGRMLQADPTKVGARAKKRGLPQLGTLGAGNHYAEIQVVEEIDDERAAARMGIDQIGQVCIMIHSGSRGLGHQVATDALVEMERAMARDGIHTNDRQLACARIQSKEGQNYLAAMAAAANFAWVNRSSMTFLTRQAFAKMFKTSPDDLDMHVIYDVSHNIAKVEEHMFQGKPKRLLVHRKGSTRAFPPHHPLIPVDYQFTGQPVLIGGTMGTCSYVLTGTDQGMEETFGSTCHGAGRAQSRNKSRKNLEYTEVLDALAKKGISIRVASPKLVMEEAPESYKDVTQVVDTCHDAGVSRKAIRLRPIAVVKG 512
            R+++EE+K+I R +P  +RI KG VPNM+VEG FYVN+ LE LMF+ELK     G VGGFLP +KQIANVAALPGIVGRSIGLPDVHSGYGFAIGNVAAFDM DP +IVSPGGVGFDINCGVRL+RTNL EKD+ P+KE+LTQS+FDHIPVGVGSKGVIP +A DLE ALEMG+DWSLREGYAWAEDKEHCEE+GRML ADP+KV  RAKKRGLPQLGTLGAGNHYAEIQVV+EI D+ AA +MGI+  GQVCIMIHSGSRG GHQVATDALV MERAM RD I TNDRQLACARI S EGQ+YL AM+AAANFAWVNRSSMTFL RQAFAK F ++PDDLDMH+IYDVSHNIAKVE+H   GK K LLVHRKGSTRAFPPHHPLIPVDYQ TGQPVLIGGTMGTCSY+LTGT++GMEETFGSTCHGAGRA SR KSR+NL+YTEVLD L ++GISIRVASPKLVMEEAPESYK+VT VVDTCH AG+S+K ++LRPIAV+KG
Sbjct:    3 RSYEEELKFIERLSPYSWRIKKGFVPNMKVEGIFYVNNNLENLMFEELKASSAQGLVGGFLPGMKQIANVAALPGIVGRSIGLPDVHSGYGFAIGNVAAFDMDDPNSIVSPGGVGFDINCGVRLLRTNLTEKDVQPVKEQLTQSMFDHIPVGVGSKGVIPINAQDLEEALEMGVDWSLREGYAWAEDKEHCEEFGRMLNADPSKVSLRAKKRGLPQLGTLGAGNHYAEIQVVDEIYDKWAATKMGIEHKGQVCIMIHSGSRGFGHQVATDALVTMERAMKRDNIVTNDRQLACARISSTEGQDYLKAMSAAANFAWVNRSSMTFLCRQAFAKQFNSTPDDLDMHLIYDVSHNIAKVEQHTVNGKLKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYILTGTEKGMEETFGSTCHGAGRALSRAKSRRNLDYTEVLDRLKEQGISIRVASPKLVMEEAPESYKNVTDVVDTCHAAGISKKTVKLRPIAVIKG 505

[Close]

BLAST of NO10G02570 vs. NCBI_GenBank
Match: XP_317316.2 (AGAP008147-PA [Anopheles gambiae str. PEST] >Q7Q412.2 RecName: Full=tRNA-splicing ligase RtcB homolog >EAA12412.2 AGAP008147-PA [Anopheles gambiae str. PEST])

HSP 1 Score: 826.6 bits (2134), Expect = 4.100e-236
Identity = 400/505 (79.21%), Postives = 445/505 (88.12%), Query Frame = 0

Query:    7 VVRTFDEEMKYIHRETPTRFRIDKGCVPNMRVEGAFYVNSKLEQLMFDELKQHITAGGVGGFLPAVKQIANVAALPGIVGRSIGLPDVHSGYGFAIGNVAAFDMSDPEAIVSPGGVGFDINCGVRLIRTNLNEKDIAPLKEELTQSLFDHIPVGVGSKGVIPTSAGDLEAALEMGMDWSLREGYAWAEDKEHCEEYGRMLQADPTKVGARAKKRGLPQLGTLGAGNHYAEIQVVEEIDDERAAARMGIDQIGQVCIMIHSGSRGLGHQVATDALVEMERAMARDGIHTNDRQLACARIQSKEGQNYLAAMAAAANFAWVNRSSMTFLTRQAFAKMFKTSPDDLDMHVIYDVSHNIAKVEEHMFQGKPKRLLVHRKGSTRAFPPHHPLIPVDYQFTGQPVLIGGTMGTCSYVLTGTDQGMEETFGSTCHGAGRAQSRNKSRKNLEYTEVLDALAKKGISIRVASPKLVMEEAPESYKDVTQVVDTCHDAGVSRKAIRLRPIAVVKG 512
            VVR ++EEMKYI R +P  F I KG   NM VEG FY NS+LE+LMFDEL+     G  GGFLP VKQIANVAALPGIVGRS+GLPD+HSGYGFAIGN+AAFDMSDP +IVSPGGVGFDINCGVRL+RTNL EKD+ P+KE+L QSLFDHIPVGVGSKG+IP +A DLE ALEMGMDWSLREGY WAEDKEHCEEYGRML ADP+KV  RAKKRGLPQLGTLGAGNHYAEIQVVEEI D+ AA++MGI+++GQ+C+MIHSGSRG GHQVATDALVEME+AM RD I TNDRQLACARI S EGQNYL AM+AAANFAWVNRSSMTFLTRQAFAK F T+PDDLDMHVIYDVSHN+AK+EEHM  G+PK+LLVHRKGSTRAFPPHHPLIPVDYQ TGQPVL+GG+MGTCS+VLTGT+ GM ETFGSTCHGAGR+ SR KSR+NL+Y +VL  L +KGISIRVASPKLV EEAP+SYKDV  VV TCHD G+S KAI+LRPIAV+KG
Sbjct:    2 VVREYNEEMKYIERLSPNSFLIKKGFQSNMNVEGIFYANSRLEKLMFDELRNACRPGMTGGFLPGVKQIANVAALPGIVGRSVGLPDIHSGYGFAIGNMAAFDMSDPTSIVSPGGVGFDINCGVRLLRTNLFEKDVQPVKEQLAQSLFDHIPVGVGSKGIIPMNAHDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRMLNADPSKVSLRAKKRGLPQLGTLGAGNHYAEIQVVEEIYDKYAASKMGIEELGQICVMIHSGSRGFGHQVATDALVEMEKAMKRDKIETNDRQLACARINSPEGQNYLKAMSAAANFAWVNRSSMTFLTRQAFAKQFNTTPDDLDMHVIYDVSHNVAKMEEHMVNGRPKQLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLVGGSMGTCSFVLTGTETGMVETFGSTCHGAGRSLSRAKSRRNLDYKDVLRDLEEKGISIRVASPKLVQEEAPDSYKDVRDVVQTCHDVGISNKAIKLRPIAVIKG 506

The following BLAST results are available for this feature:

BLAST of NO10G02570 vs. NCBI_GenBank

BLAST of NO10G02570 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM25480.1	2.700e-267	90.41	trna-splicing ligase [Nannochloropsis gaditana]	[more]
XP_003384129.1	8.100e-240	79.88	PREDICTED: tRNA-splicing ligase RtcB homolog [Amph...	[more]
XP_002503505.1	1.800e-239	79.52	predicted protein [Micromonas commoda] >C1E9Y5.1 R...	[more]
XP_004363837.1	2.200e-237	80.08	hypothetical protein CAOG_02998 [Capsaspora owczar...	[more]
XP_003055630.1	2.900e-237	78.73	predicted protein [Micromonas pusilla CCMP1545] >C...	[more]
XP_018911068.1	3.800e-237	79.41	PREDICTED: tRNA-splicing ligase RtcB homolog isofo...	[more]
KFB46399.1	4.900e-237	79.21	AGAP008147-PA-like protein [Anopheles sinensis]	[more]
XP_013186562.1	1.900e-236	80.00	PREDICTED: tRNA-splicing ligase RtcB homolog [Amye...	[more]
KZS05822.1	2.400e-236	80.32	tRNA-splicing ligase RtcB [Daphnia magna]	[more]
XP_317316.2	4.100e-236	79.21	AGAP008147-PA [Anopheles gambiae str. PEST] >Q7Q41...	[more]

Pages

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL052	nonsL052	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR004	ncniR004	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR015	ngnoR015	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK001122	NSK001122	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO10G02570.1	NO10G02570.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585955	gene_3954	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100207g4	gene5031	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO10G02570.1	NO10G02570.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO10G02570 ID=NO10G02570|Name=NO10G02570|organism=Nannochloropsis oceanica|type=gene|length=4144bp
GCTGCTGCTGCTGCTGCTGCTGCTTATCGACCGCATCAAGTTCGTTATTA
TGATTGAAGTTAAGAGTGCCGCATCCACCCCCACCACCGACAGACGTCCA
ATTCCCCAGACGACAGAACGGCCATAGCAGCTCCGTGTGCTTGTCCTTCC
CAGCGTTTCCACTTTTGCTGTTGCTGCTGTTGCTGCTGTTGCTGCTGCTA
CTACTGCTGCTTTTCGTATTAATTGCTCCTCCGTCCTTGCTTGTGCTTAA
GGCATATCGAAATTGTGCACCTCCTCCTCCACCACCACCCACTGAGAAAG
TCACCCCCTCCCCTCCAGGCACCAGCCTTCCCTCTACCCCTCCTCCTCCT
CCCCCACCAGCCATCACCAAAAGTATGTCCTCACAAAACACCTGGAAGCC
AGCCCCGCTTCCTCCACCCACTTCAATTCGCACCCCTTCCTCCCTCCCTT
CCTCCTCGCCTGCATCGTCTGCGGGAGAAACTCCCCGAAAAAGGGAGGCA
TTCATATTCCGTCTGACAAAGGCATGTGCAGGGACCCAACCAAACAATGC
AGTCTCTTGCAGTAGCCTCGAGGGAGAAGATGACAACAATGATGAAGGGA
ATGAGGAGGAAGAGGAGGTGGAGGACGGTACTGACAAGGGCTCTCCATCT
AGTAACCTCACCAAGTACTCGCCCACGCGCTTGGCCCCCACAGTAGCCTC
AGCTTCGACCAAGCCTCCACATGGCAGTCGTGGGCTGTCCCCGCACTGTA
AGTGGGCCTCGGTGGCGGCTGTACTGGCCGCGGCGACTTCTCCGGCTGAG
GGAGTGGAGTGATGAAAGGCATAGGAAAAGGAGAGGGAGGCGGGGTCATG
GGAGGACGAGGAAGAGGAGGAAGATGAGAAGGGGTCAGCCACAGACGTCA
GCCACGACGCCACGACGGCAACGAAATGCTGGGCACTGCAGTTCATGGCT
TGTAGGGCTGGAGAGGAGAGAGCGGGGGCGGGCTTTGTGAAGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGACGGGTAGTGTGCAGGGGATTTGAAGTC
GACAAGGCATAATTGGACGATTGACAGCCAGCAGATTTGATCATTGAAAA
TAGGCACTCCTCATCGTAGTCGCCCTGTGGGATGGGATGTACGGTGCGAG
GTTAGGCCATGTCACTTCGCCGGACGAGTGCGCCGAGTCGCTGTGATGGC
GTGGTTGGTGGCTTGCCTGCCATTTGTGCGTTGAGCAGCGAACACACATG
TTCCCCCACCTTCTCCATAAGCACCTACACAATACAGGCATGGTATGACT
TGCAGTGTTGAGAAACTGCAGCCGGCATGTGTGATCAGTCAATATATGGG
ACTGGAAAGGAGACTTTCGGACCTCCCCAACCAAGTCCTTCTCCTACCCT
TTTTTCTTGACCACACTACGAAGTAATCACGCCAAGGACACCGCGCCGCG
GGAACGGATGACCTATTCTACAGGATGCCGTGTGCCTTTTCTCGGCGGGC
GCAGCCAGGGCTTGTATTTGGATGCGGCACTCTCCCTTACCACAGCCTTG
CCCTACCGTAGCCCTCCCCTCCCCATCCCGGCCTGTGTGGATTTGTCCTA
GATTCTGATGCGCTGGGTACTTATTTTTGGGTCGATGACGAGGCGGAGGG
TGATGATGGGGATGCTTTGGACTTGTCCATAAAAGTGGTCGACCTGCCTG
ATTCCACTGGTTTTGACGTGGGTGTGACAAGAACTGAGATCACTTCGTCC
TCGGACGTAAGCGTGGTTGATGCGCGTTTTTAATTTCAGTCGTTGGCGGC
GACCTGTTGCATGAGAGGATTGACAAGGCGGCTGATGCTGCTGACCATGA
GGCTTTGGAACCCTTGGACCTGACGGTGGTGGTGGCCGAAGAGACGGTCA
CGGCCCTGGGTGGCGTGTTGGACGACGTGGGGATTTCAAGTGACAACGAG
GACACCACTGACCTCCCTGAGGGCGGCGAGATGCAATTGCAATTTGTCTA
TGGTGATACGCTTTTTTTGATATGATAGGAAGAACTATCCGTGAATACAG
CAAGGACAAAACCAACTTCGATTCGCAACAGCAGCACAATGTGGGGTAAT
TTTGACCTTTCATCTCTCACCCCCTCCATCCCTTCACACATCCCATTCTT
TCCTTACAGCAAGGCAGATAACGACTCACATCCAGCTCGTCTTCATAGCC
ATGGCAGAAGGCAGCAGCGTTGTCCGCACCTTTGACGAGGAAATGAAATA
CATACACCGGGAGACACCCACCCGCTTTCGAATCGACAAGGGCTGTGTCC
CCAACATGCGTGTAGAAGGCGCGTTTTACGTTAATTCAAAATTAGAACAA
CTGATGTTTGACGAGCTCAAGCAGCATATCACCGCGGGGGGGGTCGGTGG
GTTCTTGCCTGCAGTGAAGCAGATAGCGAATGTGGCTGCCTTGCCCGGGA
TTGTGGGCCGGgtaaggaggagagggatggagggagggaaggagggaagg
aagaataaaggaagggaggtacggaggggtatttgcaagtggatactgta
cccggctaattttataagtttctgatagaaacgcaagcaaaacaataact
ccttagaaatcttgtggctttcacaattcccttatatttaccaccccacc
ctccctccctccctccctccctctccagTCCATCGGTCTCCCCGACGTCC
ACTCAGGGTACGGTTTTGCCATCGGGAATGTGGCCGCCTTCGACATGTCC
GATCCCGAGGCAATTGTCTCTCCGGGTGGTGTGGGGTTTGACATCAATTG
TGGCGTCCGTCTAATTAGGACGAATTTAAACGAGAAGGACATAGCGCCTC
TGAAGGAGGAATTGACGCAGTCGTTGTTCGATCATATACCGGTAGGGGTG
GGGAGTAAGGGGGTTATACCGACCTCAGCTGGGGATTTGGAGGCAGCGTT
AGAGATGGGCATGGATTGGAGCCTGAGGGAGGGGTATGCATGGGCCGAGG
ACAAGGAGCACTGCGAGGAGTACGGAAGGATGCTGCAGGCCGATCCGACC
AAAGTAGGGGCAAGGGCAAAGAAGAGGGGGCTGCCGCAGCTGGGCACGCT
TGGGGCGGGTAATCACTACGCGGAGATTCAGGTGGTGGAGGAGATAGACG
ACGAGAGGGCGGCAGCAAGGATGGGGATCGATCAGATCGGGCAGGTATGT
ATCATGATTCATTCGGGGAGTAGGGGGTTGGGACACCAGGTCGCAACAGA
CGCATTAGTAGAGATGGAGCGGGCTATGGCCAGGGATGGCATTCACACGA
ATGATCGGCAGTTGGCCTGTGCACGGATTCAAAGCAAGGAGGGCCAGAAT
TACTTGGCGGCTATGGCGGCGGCTGCGAATTTTGCATGGGTGAATAGGAG
TAGTATGACATTTTTAACGAGGCAGGCATTCGCAAAGATGTTTAAGACCA
GCCCGGATGACTTAGATATGCACGTGATATATGATGTGTCACATAACATT
GCCAAGGTGGAGGAGCACATGTTTCAGGGGAAGCCCAAGAGGCTGTTGGT
GCATAGGAAAGGGTCCACGAGGGCCTTCCCGCCGCATCACCCACTGATTC
CGGTAGATTATCAGTTCACGGGTCAGCCAGTTCTGATTGGAGGGACGATG
GGGACGTGTAGTTATGTGCTGACTGGCACAGATCAAGGAATGGAGGAGAC
ATTTGGGAGTACTTGTCACGGGGCGGGGCGGGCGCAGAGTCGGAATAAAA
GCCGTAAGAATTTGGAGTACACGGAAGTGCTGGACGCGTTGGCAAAGAAA
GGAATAAGCATTCGTGTGGCAAGCCCGAAGTTGGTCATGGAGGAGGCGCC
AGAATCGTACAAGGATGTAACGCAGGTGGTGGATACGTGCCATGATGCCG
GGGTAAGTCGGAAGGCGATCAGGTTGCGCCCGATTGCAGTAGTCAAGGGA
TAAGGGAGGGTTCCGGAAAGTTGGAGGAGGAGAAAGGTGGGATAGGTTGA
GTTGATAGCTTAAACAGCCTGCTTCGGCGTTCGCCATACAAGGCCTCCCC
GAGGGTACATTCAAAAGAAAAAAGACAAGACGAGACAAGACCCTGAAACT
GAAGAAGGATAAGAAAGCATTGAAACATTAGACAAATAAAAGAC

protein sequence of NO10G02570.1

>NO10G02570.1-protein ID=NO10G02570.1-protein|Name=NO10G02570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=512bp
MAEGSSVVRTFDEEMKYIHRETPTRFRIDKGCVPNMRVEGAFYVNSKLEQ
LMFDELKQHITAGGVGGFLPAVKQIANVAALPGIVGRSIGLPDVHSGYGF
AIGNVAAFDMSDPEAIVSPGGVGFDINCGVRLIRTNLNEKDIAPLKEELT
QSLFDHIPVGVGSKGVIPTSAGDLEAALEMGMDWSLREGYAWAEDKEHCE
EYGRMLQADPTKVGARAKKRGLPQLGTLGAGNHYAEIQVVEEIDDERAAA
RMGIDQIGQVCIMIHSGSRGLGHQVATDALVEMERAMARDGIHTNDRQLA
CARIQSKEGQNYLAAMAAAANFAWVNRSSMTFLTRQAFAKMFKTSPDDLD
MHVIYDVSHNIAKVEEHMFQGKPKRLLVHRKGSTRAFPPHHPLIPVDYQF
TGQPVLIGGTMGTCSYVLTGTDQGMEETFGSTCHGAGRAQSRNKSRKNLE
YTEVLDALAKKGISIRVASPKLVMEEAPESYKDVTQVVDTCHDAGVSRKA
IRLRPIAVVKG*

Synonyms

Publications