NO10G02560, NO10G02560 (gene) Nannochloropsis oceanica

Overview
NameNO10G02560
Unique NameNO10G02560
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1215
Alignment locationchr10:700856..702070 -

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Properties
Property NameValue
DescriptionUbiquitin-conjugating enzyme e2-17 kDa
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:700856..702070 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR016135UBQ-conjugating_enzyme/RWD
IPR000608UBQ-conjugat_E2
Homology
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BLAST of NO10G02560 vs. NCBI_GenBank
Match: XP_005854067.1 (ubiquitin-conjugating enzyme e2 8, partial [Nannochloropsis gaditana CCMP526] >EKU22292.1 ubiquitin-conjugating enzyme e2 8, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 208.4 bits (529), Expect = 4.200e-50
Identity = 119/272 (43.75%), Postives = 155/272 (56.99%), Query Frame = 0 
Query:   48 RALIRIKKELQQNELPPNCTVQLWGG------------EASSSPT--SNLLHLRVSMLGPPGSFFEGETLHFELDIPLAYPFKAPHVTCHSRCWHPNICPDSGLVALSILGEHWRPTLSLSILIYGLQLALVEPNLDVTVNMAAADTYTHNPERFHRQVRDVLNGHGAWGLGNSSNSRTSSSRGDTSWRDGEREGIRPLMPACGAVTGVGGLIPPRGRGIVVEPNRSNIXXXXXXXXXXXXXXYACGSVRKRKLLHQMEPPEQGLEAMCIDD 306
            RA+IR+KKELQQ+ELPPNC+VQ W              + S++P     LLH +V+MLGP  S FEG  L FEL++P +YPFK P VTCHS CWHPN+C  +G V L I+GE WRPTLSLS LI+G+ LAL+E N+DV VN AAA+ Y H+ + +H Q R++L G            RTS+  GD   + G      P +P+  +      +  P G       +                    C S RKRK L++ EPPE+GLEAMCID+
Sbjct:   87 RAVIRVKKELQQSELPPNCSVQPWASRKFGTKQCNADPKCSNAPVDFQKLLHWQVTMLGPRESPFEGVPLLFELEVPPSYPFKPPRVTCHSCCWHPNVCASTGQVILPIIGEDWRPTLSLSTLIFGIHLALLEANVDVAVNSAAAEAYVHHTDLYHAQAREMLKGQAV--------RRTSA--GD---KRGRTTSTLPELPSFASHPAAEAISVPSGSSASTSMD-----------TLVSTCELDC-SARKRKALNETEPPERGLEAMCIDE 333
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BLAST of NO10G02560 vs. NCBI_GenBank
Match: EWM25474.1 (ubiquitin-conjugating enzyme e2-17 kda [Nannochloropsis gaditana])

HSP 1 Score: 208.4 bits (529), Expect = 4.200e-50
Identity = 119/272 (43.75%), Postives = 155/272 (56.99%), Query Frame = 0 
Query:   48 RALIRIKKELQQNELPPNCTVQLWGG------------EASSSPT--SNLLHLRVSMLGPPGSFFEGETLHFELDIPLAYPFKAPHVTCHSRCWHPNICPDSGLVALSILGEHWRPTLSLSILIYGLQLALVEPNLDVTVNMAAADTYTHNPERFHRQVRDVLNGHGAWGLGNSSNSRTSSSRGDTSWRDGEREGIRPLMPACGAVTGVGGLIPPRGRGIVVEPNRSNIXXXXXXXXXXXXXXYACGSVRKRKLLHQMEPPEQGLEAMCIDD 306
            RA+IR+KKELQQ+ELPPNC+VQ W              + S++P     LLH +V+MLGP  S FEG  L FEL++P +YPFK P VTCHS CWHPN+C  +G V L I+GE WRPTLSLS LI+G+ LAL+E N+DV VN AAA+ Y H+ + +H Q R++L G            RTS+  GD   + G      P +P+  +      +  P G       +                    C S RKRK L++ EPPE+GLEAMCID+
Sbjct:   26 RAVIRVKKELQQSELPPNCSVQPWASRKFGTKQCNADPKCSNAPVDFQKLLHWQVTMLGPRESPFEGVPLLFELEVPPSYPFKPPRVTCHSCCWHPNVCASTGQVILPIIGEDWRPTLSLSTLIFGIHLALLEANVDVAVNSAAAEAYVHHTDLYHAQAREMLKGQAV--------RRTSA--GD---KRGRTTSTLPELPSFASHPAAEAISVPSGSSASTSMD-----------TLVSTCELDC-SARKRKALNETEPPERGLEAMCIDE 272
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BLAST of NO10G02560 vs. NCBI_GenBank
Match: CBN78289.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 111.3 bits (277), Expect = 7.000e-21
Identity = 73/177 (41.24%), Postives = 97/177 (54.80%), Query Frame = 0 
Query:   49 ALIRIKK---ELQQNELPPNCTVQLWGGEASSS-----PTSNLLHLRVSMLGPPGSFFEGETLHFELDIPLAYPFKAPHVTCHSRCWHPNICPDSGLVALSILGEHWRPTLSLSILIYGLQLALVEPNLDVTVNMAAADTYTHNPERFHRQVRDVLNGHGAWGLGNSSNSRTSSSRG 218
            A +R+KK   EL Q+ L  N T       AS+S      T NLL L+V +    G  FEG T +F L IP +YPF AP V C SR WHPNI   +GLV+L IL + WRP LS++ +++ LQL  +EP     VN  AA   + NP+ F  QVR  L G   +G+   S+    ++ G
Sbjct:    8 AALRVKKDIAELSQHRL--NAT------HASTSIDFPDGTRNLLKLKVGVSMTAG-LFEGATFYFILTIPPSYPFHAPTVVCTSRAWHPNIDLHTGLVSLPILTKDWRPVLSINTVVFALQLMFIEPTEHYAVNKPAAAALSSNPDLFREQVRRSLAGGSLFGVQFESHRLGGTADG 175
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BLAST of NO10G02560 vs. NCBI_GenBank
Match: XP_008878229.1 (hypothetical protein H310_12806 [Aphanomyces invadans] >ETV93207.1 hypothetical protein H310_12806 [Aphanomyces invadans])

HSP 1 Score: 107.8 bits (268), Expect = 7.800e-20
Identity = 52/126 (41.27%), Postives = 76/126 (60.32%), Query Frame = 0 
Query:   80 TSNLLHLRVSM-LGPPGSFFEGETLHFELDIPLAYPFKAPHVTCHSRCWHPNICPDSGLVALSILGEHWRPTLSLSILIYGLQLALVEPNLDVTVNMAAADTYTHNPERFHRQVRDVLNGHGAWGL 205
            T N+LH+ +S+ +G   S +      F+ DIP  YPF AP V    + WHPNI  ++G V  SILG  WRP LS++ ++ GLQL  +EP+++  VN  AA T  ++P+ F RQV+  L G   +G+
Sbjct:   53 TGNILHILISISVGDVDSPYANGDFRFQFDIPRTYPFHAPVVKSLDKIWHPNIDINTGQVMFSILGNDWRPVLSINTILLGLQLIFLEPSIEFAVNQVAATTLVNDPQLFRRQVQHTLCGGAIYGV 178
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BLAST of NO10G02560 vs. NCBI_GenBank
Match: POM68970.1 (Ubiquitin-conjugating enzyme E2 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 106.7 bits (265), Expect = 1.700e-19
Identity = 57/158 (36.08%), Postives = 88/158 (55.70%), Query Frame = 0 
Query:   49 ALIRIKKELQQNELPPNCTVQLWGGEASSSPTSNLLHL--RVSMLGPPGSFFEGETLHFELDIPLAYPFKAPHVTCHSRCWHPNICPDSGLVALSILGEHWRPTLSLSILIYGLQLALVEPNLDVTVNMAAADTYTHNPERFHRQVRDVLNGHGAWGL 205
            A +R++K++ +         Q            N+L L   +S+    G +  G+   F ++IP  YPF AP V C +R WHPNI   +G V +SILG+ WRP LS++ ++ GLQL  +EPN+D  +N AAA+    NPE+F R+ + +L G   +G+
Sbjct:    8 AALRVRKDVNELAKAKFTCAQAKTRVEFPDGVENMLRLIFMISIADISGPYANGDFTFF-VEIPKTYPFHAPSVRCLTRVWHPNIEMATGKVMMSILGKDWRPVLSINTVLLGLQLIFLEPNVDYVLNPAAAEQLHQNPEQFKRETQQILCGGRFYGI 164
[Close]
BLAST of NO10G02560 vs. NCBI_GenBank
Match: XP_008901696.1 (hypothetical protein PPTG_08730 [Phytophthora parasitica INRA-310] >ETI52432.1 hypothetical protein F443_04404 [Phytophthora parasitica P1569] >ETL98888.1 hypothetical protein L917_04127 [Phytophthora parasitica] >ETM52040.1 hypothetical protein L914_04229 [Phytophthora parasitica] >ETN12639.1 hypothetical protein PPTG_08730 [Phytophthora parasitica INRA-310] >ETP50169.1 hypothetical protein F442_04432 [Phytophthora parasitica P10297] >KUF79299.1 NEDD8-conjugating enzyme Ubc12 [Phytophthora nicotianae] >KUF86715.1 NEDD8-conjugating enzyme Ubc12 [Phytophthora nicotianae])

HSP 1 Score: 105.9 bits (263), Expect = 3.000e-19
Identity = 57/158 (36.08%), Postives = 88/158 (55.70%), Query Frame = 0 
Query:   49 ALIRIKKELQQNELPPNCTVQLWGGEASSSPTSNLLHL--RVSMLGPPGSFFEGETLHFELDIPLAYPFKAPHVTCHSRCWHPNICPDSGLVALSILGEHWRPTLSLSILIYGLQLALVEPNLDVTVNMAAADTYTHNPERFHRQVRDVLNGHGAWGL 205
            A +R++K++ +         Q           +N+L L   +S++   G F  G+   F +DIP  YPF AP V C +R WHPNI   +G V + ILG+ WRP LS++ ++ GLQL  +EP +D  +N AAA+    NPE+F  +V+ +L G   +G+
Sbjct:    8 AALRVRKDVNELAKAKFTCAQARTRVEFPDGANNMLQLIFTISIIDLSGPFANGDFTFF-VDIPKTYPFHAPSVRCLTRVWHPNIDIATGKVMMPILGKDWRPVLSINTVLLGLQLIFLEPGIDYILNPAAAEQLHRNPEQFKNEVQQILCGGRFYGV 164
[Close]
BLAST of NO10G02560 vs. NCBI_GenBank
Match: ETK92309.1 (hypothetical protein L915_04287 [Phytophthora parasitica] >ETL45700.1 hypothetical protein L916_04247 [Phytophthora parasitica] >ETP22253.1 hypothetical protein F441_04378 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 105.9 bits (263), Expect = 3.000e-19
Identity = 57/158 (36.08%), Postives = 88/158 (55.70%), Query Frame = 0 
Query:   49 ALIRIKKELQQNELPPNCTVQLWGGEASSSPTSNLLHL--RVSMLGPPGSFFEGETLHFELDIPLAYPFKAPHVTCHSRCWHPNICPDSGLVALSILGEHWRPTLSLSILIYGLQLALVEPNLDVTVNMAAADTYTHNPERFHRQVRDVLNGHGAWGL 205
            A +R++K++ +         Q           +N+L L   +S++   G F  G+   F +DIP  YPF AP V C +R WHPNI   +G V + ILG+ WRP LS++ ++ GLQL  +EP +D  +N AAA+    NPE+F  +V+ +L G   +G+
Sbjct:  123 AALRVRKDVNELAKAKFTCAQARTRVEFPDGANNMLQLIFTISIIDLSGPFANGDFTFF-VDIPKTYPFHAPSVRCLTRVWHPNIDIATGKVMMPILGKDWRPVLSINTVLLGLQLIFLEPGIDYILNPAAAEQLHRNPEQFKNEVQQILCGGRFYGV 279
[Close]
BLAST of NO10G02560 vs. NCBI_GenBank
Match: ETO81216.1 (hypothetical protein F444_04427 [Phytophthora parasitica P1976])

HSP 1 Score: 105.9 bits (263), Expect = 3.000e-19
Identity = 57/158 (36.08%), Postives = 88/158 (55.70%), Query Frame = 0 
Query:   49 ALIRIKKELQQNELPPNCTVQLWGGEASSSPTSNLLHL--RVSMLGPPGSFFEGETLHFELDIPLAYPFKAPHVTCHSRCWHPNICPDSGLVALSILGEHWRPTLSLSILIYGLQLALVEPNLDVTVNMAAADTYTHNPERFHRQVRDVLNGHGAWGL 205
            A +R++K++ +         Q           +N+L L   +S++   G F  G+   F +DIP  YPF AP V C +R WHPNI   +G V + ILG+ WRP LS++ ++ GLQL  +EP +D  +N AAA+    NPE+F  +V+ +L G   +G+
Sbjct:  123 AALRVRKDVNELAKAKFTCAQARTRVEFPDGANNMLQLIFTISIIDLSGPFANGDFTFF-VDIPKTYPFHAPSVRCLTRVWHPNIDIATGKVMMPILGKDWRPVLSINTVLLGLQLIFLEPGIDYILNPAAAEQLHRNPEQFKNEVQQILCGGRFYGV 279
[Close]
BLAST of NO10G02560 vs. NCBI_GenBank
Match: XP_002958085.1 (hypothetical protein VOLCADRAFT_109434 [Volvox carteri f. nagariensis] >EFJ40816.1 hypothetical protein VOLCADRAFT_109434 [Volvox carteri f. nagariensis])

HSP 1 Score: 104.4 bits (259), Expect = 8.600e-19
Identity = 52/147 (35.37%), Postives = 84/147 (57.14%), Query Frame = 0 
Query:   51 IRIKKELQQNELPPNCTVQLWGGEASSSPTSNLLHLRVSMLGPPGSFFEGETLHFELDIPLAYPFKAPHVTCHSRCWHPNICPDSGLVALSILGEHWRPTLSLSILIYGLQLALVEPNLDVTVNMAAADTYTHNPERFHRQVRDVLN 198
            +RI+K++ +  LPPN T+    G+        L+H  ++ + P    + G   +FE +IP  YP  AP V C ++ +HPNI  + G + L+IL E W+P LS+S +IYGLQ   ++PN D  +N  AA  +  NP +F + V+  ++
Sbjct:   32 LRIQKDMAELNLPPNITISFPDGK------DKLMHFFIA-IRPDEGIYRGGKFNFEFNIPTGYPHDAPKVLCTTKVYHPNIDLE-GKICLNILREDWKPVLSISSVIYGLQFLFLDPNPDDPLNKEAAQMFVDNPRQFEQYVQRAIH 170
[Close]
BLAST of NO10G02560 vs. NCBI_GenBank
Match: XP_002902218.1 (ubiquitin-conjugating enzyme E2, putative [Phytophthora infestans T30-4] >EEY56890.1 ubiquitin-conjugating enzyme E2, putative [Phytophthora infestans T30-4])

HSP 1 Score: 104.4 bits (259), Expect = 8.600e-19
Identity = 61/175 (34.86%), Postives = 95/175 (54.29%), Query Frame = 0 
Query:   49 ALIRIKKELQQNELPPNCTVQLWGGEASSSPTSNLLHL--RVSMLGPPGSFFEGETLHFELDIPLAYPFKAPHVTCHSRCWHPNICPDSGLVALSILGEHWRPTLSLSILIYGLQLALVEPNLDVTVNMAAADTYTHNPERFHRQVRDVLNGHGAWGLGNSSNSRTSSSRGDTSW 222
            A +R++K++ +         Q           +N+L L   +S++   G F  G+   F +DIP  YPF AP V C +R WHPNI   +G V + ILG+ WRP LS++ ++ GLQL  +EP +D  +N AAA+    NPE+F ++V+ +L G   +G+   ++ R    R   SW
Sbjct:    8 AALRVRKDVNELAKAKFTCAQARTRVEFPDGANNMLKLIFTISIMDLSGPFANGDFTFF-VDIPKTYPFHAPSVRCLTRVWHPNIDIATGEVMMPILGKDWRPVLSINTVLLGLQLIFLEPGIDYVLNPAAAEQLHRNPEQFKKEVQHILCGGRFYGVDFLAHPRQLEMRRQ-SW 180
The following BLAST results are available for this feature:
BLAST of NO10G02560 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005854067.14.200e-5043.75ubiquitin-conjugating enzyme e2 8, partial [Nannoc... [more]
EWM25474.14.200e-5043.75ubiquitin-conjugating enzyme e2-17 kda [Nannochlor... [more]
CBN78289.17.000e-2141.24conserved unknown protein [Ectocarpus siliculosus][more]
XP_008878229.17.800e-2041.27hypothetical protein H310_12806 [Aphanomyces invad... [more]
POM68970.11.700e-1936.08Ubiquitin-conjugating enzyme E2 [Phytophthora palm... [more]
XP_008901696.13.000e-1936.08hypothetical protein PPTG_08730 [Phytophthora para... [more]
ETK92309.13.000e-1936.08hypothetical protein L915_04287 [Phytophthora para... [more]
ETO81216.13.000e-1936.08hypothetical protein F444_04427 [Phytophthora para... [more]
XP_002958085.18.600e-1935.37hypothetical protein VOLCADRAFT_109434 [Volvox car... [more]
XP_002902218.18.600e-1934.86ubiquitin-conjugating enzyme E2, putative [Phytoph... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001121NSK001121Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G02560.1NO10G02560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585957gene_3955Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100207g3gene5032Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G02560.1NO10G02560.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G02560 ID=NO10G02560|Name=NO10G02560|organism=Nannochloropsis oceanica|type=gene|length=1215bp
ATGATCCATACGGGGCGACATGAGCAGCAGCAGCAGCAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACATCAACAACAACAACAACACCAATATGACAGAGCTTTG
ATTCGGATAAAAAAAGAGCTGCAACAAAACGAGCTGCCCCCAAATTGTAC
TGTGCAGCTCTGGGGCGGGGAAGCCTCCAGCAGCCCCACCAGCAACTTGC
TCCACTTGCGTGTGTCGATGCTCGGCCCACCAGGGAGCTTTTTTGAAGGC
GAGACTCTCCACTTCGAGCTCGATATACCGCTGGCGTATCCTTTTAAAGC
GCCCCATGTCACCTGCCACTCCCGCTGCTGGCATCCCAACATCTGTCCTG
ATTCCGGTCTAGTCGCTTTGTCCATTCTAGGGGAACACTGGCGGCCCACC
CTATCCCTTAGTATCCTTATTTACGGCTTGCAACTCGCATTGGTGGAACC
TAATTTAGACGTGACTGTAAATATGGCCGCCGCAGACACGTATACACATA
ACCCTGAACGATTTCACCGCCAAGTTCGAGATGTCCTGAATGGACATGGC
GCGTGGGGGCTGGGCAACAGCAGCAACAGCAGGACGAGCAGCAGTCGGGG
TGACACTAGCTGGAGGGATGGAGAGAGGGAGGGAATAAGACCACTGATGC
CGGCCTGTGGTGCGGTGACAGGTGTGGGGGGGCTTATTCCTCCGCGGGGC
CGAGGAATAGTGGTTGAGCCGAACAGAAGCAACATTAGTAGTAGTAGTAG
TAGTAGCATCAGCAGCAGCAGTGGCAATTATGCGTGTGGCTCTGTACGGA
AGCGCAAGCTCCTCCATCAGATGGAACCCCCCGAACAAGGCCTTGAAGCC
ATGTGCATCGACGACAGCAGCAAGATCACTAGCAGCTGCTCTGCCAACAC
CAGCGTATTGCTCGACTTTTCACCCAGCGAAGACGAGAGGAAACCACTCT
CTCGCCCGGGTAGCGGGCAGCACCCCAAACGTGCAAGGAGCGTCAGTGAT
GGAGGAGGAGAAGGAGAAGGAGGAGGTGACATGGATCTGGCCATGCTAGC
AGCAGCGGCAGCAGCACCAGGAAGAGATCAGCAGCATTCTGAGAGCTTTC
CGTTTTCGATGATGATAGCGAGTGAGGATGGAGGGGTCTTCATGGCACCG
CCCCCAGCGAGCTAG
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protein sequence of NO10G02560.1

>NO10G02560.1-protein ID=NO10G02560.1-protein|Name=NO10G02560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=405bp
MIHTGRHEQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHQQQQQHQYDRAL
IRIKKELQQNELPPNCTVQLWGGEASSSPTSNLLHLRVSMLGPPGSFFEG
ETLHFELDIPLAYPFKAPHVTCHSRCWHPNICPDSGLVALSILGEHWRPT
LSLSILIYGLQLALVEPNLDVTVNMAAADTYTHNPERFHRQVRDVLNGHG
AWGLGNSSNSRTSSSRGDTSWRDGEREGIRPLMPACGAVTGVGGLIPPRG
RGIVVEPNRSNISSSSSSSISSSSGNYACGSVRKRKLLHQMEPPEQGLEA
MCIDDSSKITSSCSANTSVLLDFSPSEDERKPLSRPGSGQHPKRARSVSD
GGGEGEGGGDMDLAMLAAAAAAPGRDQQHSESFPFSMMIASEDGGVFMAP
PPAS*
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Synonyms
Publications