NO10G02560.1, NO10G02560.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G02560.1
Unique NameNO10G02560.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1215
Alignment locationchr10:700856..702070 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:700856..702070 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO10G02560.1 vs.
Match: XP_005854067.1 (ubiquitin-conjugating enzyme e2 8, partial [Nannochloropsis gaditana CCMP526]; EKU22292.1 ubiquitin-conjugating enzyme e2 8, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 208.4 bits (529), Expect = 4.200e-50
Identity = 127/283 (44.88%), Postives = 165/283 (58.30%), Query Frame = 0
Query:   37 QHQQQQQHQYDRALIRIKKELQQNELPPNCTVQLWGG------------EASSSPTS--NLLHLRVSMLGPPGSFFEGETLHFELDIPLAYPFKAPHVTCHSRCWHPNICPDSGLVALSILGEHWRPTLSLSILIYGLQLALVEPNLDVTVNMAAADTYTHNPERFHRQVRDVLNGHGAWGLGNSSNSRTSSSRGDTSWRDGEREGIRPLMPACGAVTGVGGLIPPRGRGIVVEPNRSNISSSSSSSISSSSGNYACGSVRKRKLLHQMEPPEQGLEAMCIDD 306
            Q  Q  Q  Y RA+IR+KKELQQ+ELPPNC+VQ W              + S++P     LLH +V+MLGP  S FEG  L FEL++P +YPFK P VTCHS CWHPN+C  +G V L I+GE WRPTLSLS LI+G+ LAL+E N+DV VN AAA+ Y H+ + +H Q R++L G            RTS+  GD   + G      P +P+  +      +  P G            S+S+S     S+    C S RKRK L++ EPPE+GLEAMCID+
Sbjct:   76 QRPQNSQDNYGRAVIRVKKELQQSELPPNCSVQPWASRKFGTKQCNADPKCSNAPVDFQKLLHWQVTMLGPRESPFEGVPLLFELEVPPSYPFKPPRVTCHSCCWHPNVCASTGQVILPIIGEDWRPTLSLSTLIFGIHLALLEANVDVAVNSAAAEAYVHHTDLYHAQAREMLKGQAV--------RRTSA--GD---KRGRTTSTLPELPSFASHPAAEAISVPSGS-----------SASTSMDTLVSTCELDC-SARKRKALNETEPPERGLEAMCIDE 333          
The following BLAST results are available for this feature:
BLAST of NO10G02560.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854067.14.200e-5044.88ubiquitin-conjugating enzyme e2 8, partial [Nannoc... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G02560NO10G02560Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G02560.1NO10G02560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G02560.1.cds1NO10G02560.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G02560.1 ID=NO10G02560.1|Name=NO10G02560.1|organism=Nannochloropsis oceanica|type=mRNA|length=1215bp
ATGATCCATACGGGGCGACATGAGCAGCAGCAGCAGCAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACATCAACAACAACAACAACACCAATATGACAGAGCTTTG
ATTCGGATAAAAAAAGAGCTGCAACAAAACGAGCTGCCCCCAAATTGTAC
TGTGCAGCTCTGGGGCGGGGAAGCCTCCAGCAGCCCCACCAGCAACTTGC
TCCACTTGCGTGTGTCGATGCTCGGCCCACCAGGGAGCTTTTTTGAAGGC
GAGACTCTCCACTTCGAGCTCGATATACCGCTGGCGTATCCTTTTAAAGC
GCCCCATGTCACCTGCCACTCCCGCTGCTGGCATCCCAACATCTGTCCTG
ATTCCGGTCTAGTCGCTTTGTCCATTCTAGGGGAACACTGGCGGCCCACC
CTATCCCTTAGTATCCTTATTTACGGCTTGCAACTCGCATTGGTGGAACC
TAATTTAGACGTGACTGTAAATATGGCCGCCGCAGACACGTATACACATA
ACCCTGAACGATTTCACCGCCAAGTTCGAGATGTCCTGAATGGACATGGC
GCGTGGGGGCTGGGCAACAGCAGCAACAGCAGGACGAGCAGCAGTCGGGG
TGACACTAGCTGGAGGGATGGAGAGAGGGAGGGAATAAGACCACTGATGC
CGGCCTGTGGTGCGGTGACAGGTGTGGGGGGGCTTATTCCTCCGCGGGGC
CGAGGAATAGTGGTTGAGCCGAACAGAAGCAACATTAGTAGTAGTAGTAG
TAGTAGCATCAGCAGCAGCAGTGGCAATTATGCGTGTGGCTCTGTACGGA
AGCGCAAGCTCCTCCATCAGATGGAACCCCCCGAACAAGGCCTTGAAGCC
ATGTGCATCGACGACAGCAGCAAGATCACTAGCAGCTGCTCTGCCAACAC
CAGCGTATTGCTCGACTTTTCACCCAGCGAAGACGAGAGGAAACCACTCT
CTCGCCCGGGTAGCGGGCAGCACCCCAAACGTGCAAGGAGCGTCAGTGAT
GGAGGAGGAGAAGGAGAAGGAGGAGGTGACATGGATCTGGCCATGCTAGC
AGCAGCGGCAGCAGCACCAGGAAGAGATCAGCAGCATTCTGAGAGCTTTC
CGTTTTCGATGATGATAGCGAGTGAGGATGGAGGGGTCTTCATGGCACCG
CCCCCAGCGAGCTAG
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protein sequence of NO10G02560.1

>NO10G02560.1-protein ID=NO10G02560.1-protein|Name=NO10G02560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=405bp
MIHTGRHEQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHQQQQQHQYDRAL
IRIKKELQQNELPPNCTVQLWGGEASSSPTSNLLHLRVSMLGPPGSFFEG
ETLHFELDIPLAYPFKAPHVTCHSRCWHPNICPDSGLVALSILGEHWRPT
LSLSILIYGLQLALVEPNLDVTVNMAAADTYTHNPERFHRQVRDVLNGHG
AWGLGNSSNSRTSSSRGDTSWRDGEREGIRPLMPACGAVTGVGGLIPPRG
RGIVVEPNRSNISSSSSSSISSSSGNYACGSVRKRKLLHQMEPPEQGLEA
MCIDDSSKITSSCSANTSVLLDFSPSEDERKPLSRPGSGQHPKRARSVSD
GGGEGEGGGDMDLAMLAAAAAAPGRDQQHSESFPFSMMIASEDGGVFMAP
PPAS*
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mRNA from alignment at chr10:700856..702070-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G02560.1 ID=NO10G02560.1|Name=NO10G02560.1|organism=Nannochloropsis oceanica|type=mRNA|length=1215bp|location=Sequence derived from alignment at chr10:700856..702070- (Nannochloropsis oceanica)
ATGATCCATACGGGGCGACATGAGCAGCAGCAGCAGCAACAACAACAACA ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC AACAACAACAACATCAACAACAACAACAACACCAATATGACAGAGCTTTG ATTCGGATAAAAAAAGAGCTGCAACAAAACGAGCTGCCCCCAAATTGTAC TGTGCAGCTCTGGGGCGGGGAAGCCTCCAGCAGCCCCACCAGCAACTTGC TCCACTTGCGTGTGTCGATGCTCGGCCCACCAGGGAGCTTTTTTGAAGGC GAGACTCTCCACTTCGAGCTCGATATACCGCTGGCGTATCCTTTTAAAGC GCCCCATGTCACCTGCCACTCCCGCTGCTGGCATCCCAACATCTGTCCTG ATTCCGGTCTAGTCGCTTTGTCCATTCTAGGGGAACACTGGCGGCCCACC CTATCCCTTAGTATCCTTATTTACGGCTTGCAACTCGCATTGGTGGAACC TAATTTAGACGTGACTGTAAATATGGCCGCCGCAGACACGTATACACATA ACCCTGAACGATTTCACCGCCAAGTTCGAGATGTCCTGAATGGACATGGC GCGTGGGGGCTGGGCAACAGCAGCAACAGCAGGACGAGCAGCAGTCGGGG TGACACTAGCTGGAGGGATGGAGAGAGGGAGGGAATAAGACCACTGATGC CGGCCTGTGGTGCGGTGACAGGTGTGGGGGGGCTTATTCCTCCGCGGGGC CGAGGAATAGTGGTTGAGCCGAACAGAAGCAACATTAGTAGTAGTAGTAG TAGTAGCATCAGCAGCAGCAGTGGCAATTATGCGTGTGGCTCTGTACGGA AGCGCAAGCTCCTCCATCAGATGGAACCCCCCGAACAAGGCCTTGAAGCC ATGTGCATCGACGACAGCAGCAAGATCACTAGCAGCTGCTCTGCCAACAC CAGCGTATTGCTCGACTTTTCACCCAGCGAAGACGAGAGGAAACCACTCT CTCGCCCGGGTAGCGGGCAGCACCCCAAACGTGCAAGGAGCGTCAGTGAT GGAGGAGGAGAAGGAGAAGGAGGAGGTGACATGGATCTGGCCATGCTAGC AGCAGCGGCAGCAGCACCAGGAAGAGATCAGCAGCATTCTGAGAGCTTTC CGTTTTCGATGATGATAGCGAGTGAGGATGGAGGGGTCTTCATGGCACCG CCCCCAGCGAGCTAG
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Coding sequence (CDS) from alignment at chr10:700856..702070-

>NO10G02560.1 ID=NO10G02560.1|Name=NO10G02560.1|organism=Nannochloropsis oceanica|type=CDS|length=1215bp|location=Sequence derived from alignment at chr10:700856..702070- (Nannochloropsis oceanica)
ATGATCCATACGGGGCGACATGAGCAGCAGCAGCAGCAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACATCAACAACAACAACAACACCAATATGACAGAGCTTTG
ATTCGGATAAAAAAAGAGCTGCAACAAAACGAGCTGCCCCCAAATTGTAC
TGTGCAGCTCTGGGGCGGGGAAGCCTCCAGCAGCCCCACCAGCAACTTGC
TCCACTTGCGTGTGTCGATGCTCGGCCCACCAGGGAGCTTTTTTGAAGGC
GAGACTCTCCACTTCGAGCTCGATATACCGCTGGCGTATCCTTTTAAAGC
GCCCCATGTCACCTGCCACTCCCGCTGCTGGCATCCCAACATCTGTCCTG
ATTCCGGTCTAGTCGCTTTGTCCATTCTAGGGGAACACTGGCGGCCCACC
CTATCCCTTAGTATCCTTATTTACGGCTTGCAACTCGCATTGGTGGAACC
TAATTTAGACGTGACTGTAAATATGGCCGCCGCAGACACGTATACACATA
ACCCTGAACGATTTCACCGCCAAGTTCGAGATGTCCTGAATGGACATGGC
GCGTGGGGGCTGGGCAACAGCAGCAACAGCAGGACGAGCAGCAGTCGGGG
TGACACTAGCTGGAGGGATGGAGAGAGGGAGGGAATAAGACCACTGATGC
CGGCCTGTGGTGCGGTGACAGGTGTGGGGGGGCTTATTCCTCCGCGGGGC
CGAGGAATAGTGGTTGAGCCGAACAGAAGCAACATTAGTAGTAGTAGTAG
TAGTAGCATCAGCAGCAGCAGTGGCAATTATGCGTGTGGCTCTGTACGGA
AGCGCAAGCTCCTCCATCAGATGGAACCCCCCGAACAAGGCCTTGAAGCC
ATGTGCATCGACGACAGCAGCAAGATCACTAGCAGCTGCTCTGCCAACAC
CAGCGTATTGCTCGACTTTTCACCCAGCGAAGACGAGAGGAAACCACTCT
CTCGCCCGGGTAGCGGGCAGCACCCCAAACGTGCAAGGAGCGTCAGTGAT
GGAGGAGGAGAAGGAGAAGGAGGAGGTGACATGGATCTGGCCATGCTAGC
AGCAGCGGCAGCAGCACCAGGAAGAGATCAGCAGCATTCTGAGAGCTTTC
CGTTTTCGATGATGATAGCGAGTGAGGATGGAGGGGTCTTCATGGCACCG
CCCCCAGCGAGCTAG
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Synonyms
Publications