|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr10 | genome | chr10:700856..702070 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO10G02560.1 vs.
Match: XP_005854067.1 (ubiquitin-conjugating enzyme e2 8, partial [Nannochloropsis gaditana CCMP526]; EKU22292.1 ubiquitin-conjugating enzyme e2 8, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 208.4 bits (529), Expect = 4.200e-50 Identity = 127/283 (44.88%), Postives = 165/283 (58.30%), Query Frame = 0
Query: 37 QHQQQQQHQYDRALIRIKKELQQNELPPNCTVQLWGG------------EASSSPTS--NLLHLRVSMLGPPGSFFEGETLHFELDIPLAYPFKAPHVTCHSRCWHPNICPDSGLVALSILGEHWRPTLSLSILIYGLQLALVEPNLDVTVNMAAADTYTHNPERFHRQVRDVLNGHGAWGLGNSSNSRTSSSRGDTSWRDGEREGIRPLMPACGAVTGVGGLIPPRGRGIVVEPNRSNISSSSSSSISSSSGNYACGSVRKRKLLHQMEPPEQGLEAMCIDD 306
Q Q Q Y RA+IR+KKELQQ+ELPPNC+VQ W + S++P LLH +V+MLGP S FEG L FEL++P +YPFK P VTCHS CWHPN+C +G V L I+GE WRPTLSLS LI+G+ LAL+E N+DV VN AAA+ Y H+ + +H Q R++L G RTS+ GD + G P +P+ + + P G S+S+S S+ C S RKRK L++ EPPE+GLEAMCID+
Sbjct: 76 QRPQNSQDNYGRAVIRVKKELQQSELPPNCSVQPWASRKFGTKQCNADPKCSNAPVDFQKLLHWQVTMLGPRESPFEGVPLLFELEVPPSYPFKPPRVTCHSCCWHPNVCASTGQVILPIIGEDWRPTLSLSTLIFGIHLALLEANVDVAVNSAAAEAYVHHTDLYHAQAREMLKGQAV--------RRTSA--GD---KRGRTTSTLPELPSFASHPAAEAISVPSGS-----------SASTSMDTLVSTCELDC-SARKRKALNETEPPERGLEAMCIDE 333
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO10G02560.1 ID=NO10G02560.1|Name=NO10G02560.1|organism=Nannochloropsis oceanica|type=mRNA|length=1215bp ATGATCCATACGGGGCGACATGAGCAGCAGCAGCAGCAACAACAACAACA ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC AACAACAACAACATCAACAACAACAACAACACCAATATGACAGAGCTTTG ATTCGGATAAAAAAAGAGCTGCAACAAAACGAGCTGCCCCCAAATTGTAC TGTGCAGCTCTGGGGCGGGGAAGCCTCCAGCAGCCCCACCAGCAACTTGC TCCACTTGCGTGTGTCGATGCTCGGCCCACCAGGGAGCTTTTTTGAAGGC GAGACTCTCCACTTCGAGCTCGATATACCGCTGGCGTATCCTTTTAAAGC GCCCCATGTCACCTGCCACTCCCGCTGCTGGCATCCCAACATCTGTCCTG ATTCCGGTCTAGTCGCTTTGTCCATTCTAGGGGAACACTGGCGGCCCACC CTATCCCTTAGTATCCTTATTTACGGCTTGCAACTCGCATTGGTGGAACC TAATTTAGACGTGACTGTAAATATGGCCGCCGCAGACACGTATACACATA ACCCTGAACGATTTCACCGCCAAGTTCGAGATGTCCTGAATGGACATGGC GCGTGGGGGCTGGGCAACAGCAGCAACAGCAGGACGAGCAGCAGTCGGGG TGACACTAGCTGGAGGGATGGAGAGAGGGAGGGAATAAGACCACTGATGC CGGCCTGTGGTGCGGTGACAGGTGTGGGGGGGCTTATTCCTCCGCGGGGC CGAGGAATAGTGGTTGAGCCGAACAGAAGCAACATTAGTAGTAGTAGTAG TAGTAGCATCAGCAGCAGCAGTGGCAATTATGCGTGTGGCTCTGTACGGA AGCGCAAGCTCCTCCATCAGATGGAACCCCCCGAACAAGGCCTTGAAGCC ATGTGCATCGACGACAGCAGCAAGATCACTAGCAGCTGCTCTGCCAACAC CAGCGTATTGCTCGACTTTTCACCCAGCGAAGACGAGAGGAAACCACTCT CTCGCCCGGGTAGCGGGCAGCACCCCAAACGTGCAAGGAGCGTCAGTGAT GGAGGAGGAGAAGGAGAAGGAGGAGGTGACATGGATCTGGCCATGCTAGC AGCAGCGGCAGCAGCACCAGGAAGAGATCAGCAGCATTCTGAGAGCTTTC CGTTTTCGATGATGATAGCGAGTGAGGATGGAGGGGTCTTCATGGCACCG CCCCCAGCGAGCTAG back to topprotein sequence of NO10G02560.1 >NO10G02560.1-protein ID=NO10G02560.1-protein|Name=NO10G02560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=405bp MIHTGRHEQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHQQQQQHQYDRAL IRIKKELQQNELPPNCTVQLWGGEASSSPTSNLLHLRVSMLGPPGSFFEG ETLHFELDIPLAYPFKAPHVTCHSRCWHPNICPDSGLVALSILGEHWRPT LSLSILIYGLQLALVEPNLDVTVNMAAADTYTHNPERFHRQVRDVLNGHG AWGLGNSSNSRTSSSRGDTSWRDGEREGIRPLMPACGAVTGVGGLIPPRG RGIVVEPNRSNISSSSSSSISSSSGNYACGSVRKRKLLHQMEPPEQGLEA MCIDDSSKITSSCSANTSVLLDFSPSEDERKPLSRPGSGQHPKRARSVSD GGGEGEGGGDMDLAMLAAAAAAPGRDQQHSESFPFSMMIASEDGGVFMAP PPAS* back to topmRNA from alignment at chr10:700856..702070- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO10G02560.1 ID=NO10G02560.1|Name=NO10G02560.1|organism=Nannochloropsis oceanica|type=mRNA|length=1215bp|location=Sequence derived from alignment at chr10:700856..702070- (Nannochloropsis oceanica) ATGATCCATACGGGGCGACATGAGCAGCAGCAGCAGCAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACATCAACAACAACAACAACACCAATATGACAGAGCTTTG
ATTCGGATAAAAAAAGAGCTGCAACAAAACGAGCTGCCCCCAAATTGTAC
TGTGCAGCTCTGGGGCGGGGAAGCCTCCAGCAGCCCCACCAGCAACTTGC
TCCACTTGCGTGTGTCGATGCTCGGCCCACCAGGGAGCTTTTTTGAAGGC
GAGACTCTCCACTTCGAGCTCGATATACCGCTGGCGTATCCTTTTAAAGC
GCCCCATGTCACCTGCCACTCCCGCTGCTGGCATCCCAACATCTGTCCTG
ATTCCGGTCTAGTCGCTTTGTCCATTCTAGGGGAACACTGGCGGCCCACC
CTATCCCTTAGTATCCTTATTTACGGCTTGCAACTCGCATTGGTGGAACC
TAATTTAGACGTGACTGTAAATATGGCCGCCGCAGACACGTATACACATA
ACCCTGAACGATTTCACCGCCAAGTTCGAGATGTCCTGAATGGACATGGC
GCGTGGGGGCTGGGCAACAGCAGCAACAGCAGGACGAGCAGCAGTCGGGG
TGACACTAGCTGGAGGGATGGAGAGAGGGAGGGAATAAGACCACTGATGC
CGGCCTGTGGTGCGGTGACAGGTGTGGGGGGGCTTATTCCTCCGCGGGGC
CGAGGAATAGTGGTTGAGCCGAACAGAAGCAACATTAGTAGTAGTAGTAG
TAGTAGCATCAGCAGCAGCAGTGGCAATTATGCGTGTGGCTCTGTACGGA
AGCGCAAGCTCCTCCATCAGATGGAACCCCCCGAACAAGGCCTTGAAGCC
ATGTGCATCGACGACAGCAGCAAGATCACTAGCAGCTGCTCTGCCAACAC
CAGCGTATTGCTCGACTTTTCACCCAGCGAAGACGAGAGGAAACCACTCT
CTCGCCCGGGTAGCGGGCAGCACCCCAAACGTGCAAGGAGCGTCAGTGAT
GGAGGAGGAGAAGGAGAAGGAGGAGGTGACATGGATCTGGCCATGCTAGC
AGCAGCGGCAGCAGCACCAGGAAGAGATCAGCAGCATTCTGAGAGCTTTC
CGTTTTCGATGATGATAGCGAGTGAGGATGGAGGGGTCTTCATGGCACCG
CCCCCAGCGAGCTAG back to topCoding sequence (CDS) from alignment at chr10:700856..702070- >NO10G02560.1 ID=NO10G02560.1|Name=NO10G02560.1|organism=Nannochloropsis oceanica|type=CDS|length=1215bp|location=Sequence derived from alignment at chr10:700856..702070- (Nannochloropsis oceanica) ATGATCCATACGGGGCGACATGAGCAGCAGCAGCAGCAACAACAACAACA ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC AACAACAACAACATCAACAACAACAACAACACCAATATGACAGAGCTTTG ATTCGGATAAAAAAAGAGCTGCAACAAAACGAGCTGCCCCCAAATTGTAC TGTGCAGCTCTGGGGCGGGGAAGCCTCCAGCAGCCCCACCAGCAACTTGC TCCACTTGCGTGTGTCGATGCTCGGCCCACCAGGGAGCTTTTTTGAAGGC GAGACTCTCCACTTCGAGCTCGATATACCGCTGGCGTATCCTTTTAAAGC GCCCCATGTCACCTGCCACTCCCGCTGCTGGCATCCCAACATCTGTCCTG ATTCCGGTCTAGTCGCTTTGTCCATTCTAGGGGAACACTGGCGGCCCACC CTATCCCTTAGTATCCTTATTTACGGCTTGCAACTCGCATTGGTGGAACC TAATTTAGACGTGACTGTAAATATGGCCGCCGCAGACACGTATACACATA ACCCTGAACGATTTCACCGCCAAGTTCGAGATGTCCTGAATGGACATGGC GCGTGGGGGCTGGGCAACAGCAGCAACAGCAGGACGAGCAGCAGTCGGGG TGACACTAGCTGGAGGGATGGAGAGAGGGAGGGAATAAGACCACTGATGC CGGCCTGTGGTGCGGTGACAGGTGTGGGGGGGCTTATTCCTCCGCGGGGC CGAGGAATAGTGGTTGAGCCGAACAGAAGCAACATTAGTAGTAGTAGTAG TAGTAGCATCAGCAGCAGCAGTGGCAATTATGCGTGTGGCTCTGTACGGA AGCGCAAGCTCCTCCATCAGATGGAACCCCCCGAACAAGGCCTTGAAGCC ATGTGCATCGACGACAGCAGCAAGATCACTAGCAGCTGCTCTGCCAACAC CAGCGTATTGCTCGACTTTTCACCCAGCGAAGACGAGAGGAAACCACTCT CTCGCCCGGGTAGCGGGCAGCACCCCAAACGTGCAAGGAGCGTCAGTGAT GGAGGAGGAGAAGGAGAAGGAGGAGGTGACATGGATCTGGCCATGCTAGC AGCAGCGGCAGCAGCACCAGGAAGAGATCAGCAGCATTCTGAGAGCTTTC CGTTTTCGATGATGATAGCGAGTGAGGATGGAGGGGTCTTCATGGCACCG CCCCCAGCGAGCTAG back to top
|