NO10G02550, NO10G02550 (gene) Nannochloropsis oceanica

Overview
NameNO10G02550
Unique NameNO10G02550
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length6201
Alignment locationchr10:696284..702484 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:696284..702484 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO10G02550 vs. NCBI_GenBank
Match: EWM25477.1 (hypothetical protein Naga_100207g2 [Nannochloropsis gaditana])

HSP 1 Score: 347.8 bits (891), Expect = 2.800e-92
Identity = 182/255 (71.37%), Postives = 205/255 (80.39%), Query Frame = 0
Query:    1 MRILFPAALLAMVLGMAAASKPLLPRTMWERKARTDKRRVES-GDNPALTSTEELREMLSINEGTLAGFSKVAMDLVSKVNFGSADSSQIDHIFKTFKILKQSPAYSAAMAPNSGLDMTDLGTKSKVLADAVGQFANLAINLRGGMASANAMEGGINSKVLEFLKKGDEATLALAERVKDGDHEAIWDLQQAFMSTEFPGLNIKELPDDEFVMAARQFLLNDEGLSRMIGEENTLSVLMDEELLFKNNPTLTGLM 255
            MR  F   L A VLG+ AAS  LLPRTMWER+ARTDKRR E+ G+    TST+ELREML INEG+L+ FSKVAMDLVSKV+F SAD    D +F TFKILKQSPAY+ AM P+SGLDMT+  TKSKVLADAVGQ  NL +NLRGGMAS N+ EGGIN+KVLEFL+ GDEATLALAE+VK GD  AIWDLQQ FMS EFPGLN+KELPDD+F+ AAR     DEGLS +IGEENTL VLMDE+LLF NNPTL GL+
Sbjct:    1 MRASFRVVLFAAVLGLVAASNTLLPRTMWERRARTDKRRAENLGEKTIPTSTDELREMLKINEGSLSSFSKVAMDLVSKVDFASADPQLFDRMFSTFKILKQSPAYTDAMKPDSGLDMTNTATKSKVLADAVGQLINLGVNLRGGMASVNSKEGGINNKVLEFLRNGDEATLALAEKVKAGDSSAIWDLQQKFMSAEFPGLNLKELPDDDFIKAARTLFTKDEGLSGLIGEENTLEVLMDEDLLFGNNPTLQGLI 255          
The following BLAST results are available for this feature:
BLAST of NO10G02550 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25477.12.800e-9271.37hypothetical protein Naga_100207g2 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001120NSK001120Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G02550.1NO10G02550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585963gene_3957Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100207g2gene5033Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G02550.1NO10G02550.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G02550 ID=NO10G02550|Name=NO10G02550|organism=Nannochloropsis oceanica|type=gene|length=6201bp
GTCTTTCGTCCGCTACGGTTCTGTGAGTGTGGGACGGGCGGTCGCCGCAA
TAAGGGGAGCAGGAGGATAGGGAGTGGGTGAGGGAACTGATTGTGCATGA
GTTTAAGGACCTTGATGGCTACTTGGTGTGGGAAGGAGAAGGGCTGCGAA
ACCCCTCTAGAGCGTGCACATGGTGTCTCGTGCCTGACGGCCGAAGTCGA
CAGGACGGCTTGGCACCTCTGCGCGCCTCCACGCCGGTCACCCTGTGTGT
GCGTAAGACCTCGCACCGCCGTGTAAAAATCAATAGCCAGAGCTATGGCT
TAGTTTAGCAAGGGGATTGGCCTCCCAAAGACGCCGTGTCGCCCGCCTCC
TGCGTTCTCCGGCGGGTGAGCCATGGGCCAGCCAGTCTGTCTGTATCCAC
ACGCGCCTTGTTTCCGCAGGGGGCAATCATCAGCTTTCTTGGTCACACAA
GCGCCAGGAAACGAGGTGGTGGAACCGCCCAGATGAATGGGACAAGCATC
GGAAACGTGTGCAAGGACATTTAGTGTTGTCCCACTGCAGCGAGCCTGTC
GTCCTCAACGGAGCTCTTCTCCAGGCGGAGGCGTTGGATGCAACGGCTGG
GCAAGAGAATCTTTCAGCGGCGTCGCAAGAAGATCGAAATATCAGTCACA
CCCGTCGCTCTGATTGCCGCGTGACCCCCGTTATGTGGTTTCTCTGTTTG
GTCAAAGGATGCAATCGATAACGTTGGCTTGTGGAAAGGACACGTCTTGA
ATTGGTGTGTGCGTGTGCCCAGGCAATTAACGCCCGTTAACCTCGCGAGT
ACGCGTGGCCCATCAAGCATCGATTGATCATCACTTGTCGGTCATCATCC
GTCACGAAACAAAGCTTCTGAATCAAATATCACATTATTGATGGTGGGTA
TGCTCCTGTAGTACTTCTCCTTGAAAGGCCGTAGGAGTGAGAATGTTGAC
GGCGCGGCGCTAAGAGCGTCGTGGAAAAGATGGGGGGGAATTTTCCACTT
CTTATTTAAACCACACATGCCCGGTATATGCAGGTAAGCTGCAATTACAA
ATAATGTTATTGTGGCCATGATTCGATTCGATTTCCATGCTCACGTGGAG
ATGATGAGCTGCTGCTCACCACATTTTGATAGCGTTGCCAATTGTTATCC
TTTTTGATCACGTGGAGCAAATTAGGGGCTTCTAATGACTGCATGGCAAC
AAAAGCCTCATAGATTACGTATTTTTTACATTATTTGCAAAAATTATCGT
AAGGTTGTGTCGGATACACGACACTTGACCCCGCAAACATTCTACATCAT
CGACGGGCAAGCAGGGCCACCAGGCGCGATGCCCGCGAAGCAAGGGGGGG
CGAGCGTGTAGTTTCCGTGCCTCCTGTATTTCGCTCCTCCTTCAGCCTTG
CTTCAGCCCTTTGCTGAACGCACCATCCCTCACTTCAGATGAGAGAGGCC
CTGTTGAGATTTCTGTGTATTTCTGTGCCGGGATCACGCTGAATCACTCT
TGTCTGCATGTCAAGTCCGTATCCTATGCCTCTTGGCTGGCTTCACACTT
TTGTTTGCTTGTGCCGTTCGAGTATCGTTTTGCGTCGATTAAAAATCGAA
TTCGCTAGATACGAGGAGTTTCCATACTCCAAATGGGTAGCTTGACAGCG
GAAAGCTTCCAGTTGGGGAAAAAAAGAAGGGTGGAAGCCGGGAAGATGAT
GAAGGGGGCAAGATGATGTAGGAAAGGCCAGACACTTGCTTGCGCAAATG
GTCAGACCGGTTCGAGACACACAGCATATTTGCTTAGGGCCTTGGACATA
ATAGCTGTAAAGCGCTCATCAGTTATTTTCCTGATTCAAAGACGAAATTG
CATACCATCATCAACATGCGGCAACGAAGAACAAAGAAAGCGTCGTCGTG
CGGGGACCAAAAAACGACCCAAAGAAACTTTTCCCAACTGTCAGAATGAG
AGAGCCCTCCTCCGTTTCCTGTCTTCCTCTTCTTGATTGAGCCCTCCCAT
TCGCATTGATGTCTCTCTAGGGTCATTATCCACCAGATCCACTGAGCCCC
AGTCGTGGTTGTATCTGTGTGCCATGTAGGGGTGCGTCGAGATCGAACAA
GCCATGTAGCCCTCAACCACTTTATGGCCCATGCTCACAACGACGGCTTG
CGTCGCAGCACACGACTTCTTTTCCCAAACACGCTCACGTCTCTACTCTA
CATACCTAGGAGCAACGCCCTCTTCCATCCCCACTTCAAGTAATTAAGCA
AATATGCGCATCCTCTTCCCCGCGGCTCTTCTGGCCATGGTGCTCGGCAT
GGCCGCTGCCTCCAAGCCCCTGCTGCCCCGGACGATGTGGGAGCGCAAGG
CCCGCACAGACAAGCGTCGCGTTGAGTCCGGTGACAACCCCGCCCTGACC
AGCACGGAAGAGCTCCGCGAGATGCTGAGCATCAACGAGGGCACGCTTGC
CGGCTTCAGCAAGGTTGCCATGGACCTGGTCAGgtaaggccaattgtaga
agagagggtggggtgggctggaaaaagcttctactaccgtagctttttcg
atgcatgcgcacagttgcaagcttatactcataatttactttctcctcta
tcgactcataatgttatttttcccttcacctttcaaacatgctcacccgg
cttacagCAAAGTCAATTTTGGGTCCGCGGACTCCAGTCAAATTGACCAT
ATATTCAAAACCTTCAAGATCCTGAAGCAGTCCCCTGCGTACAGCGCGGC
GATGGCCCCAAACTCGGGCCTTGATATGACCGATTTGGGAACGgtaggtt
tgatcgtgatggtcgtagtgaccggaaggaaggtcttctaccagtgccgt
ggctccagcacgcatgcatgtggcgacggtggctcgcttacactcctttc
ctctctcctcgtcctcttcttacccctcctctttctactcttctttctct
acctcatacaattttacgggctgacatccatctgacgcctgaaaacagAA
AAGCAAGGTCCTGGCCGATGCCGTGGGTCAGTTCGCCAACCTGGCCATTA
ACTTGCGCGGGGGCATGGCCTCCGCCAATGCCATGGAAGGGGGTATCAAT
AGCAAGGTGCTTGAGTTCTTGAAGAAAGGAGACGAAGCAACATTGGCCCT
TGCCGAGAGGGTGAAGGATGGAGATCATGAGGCGATTTGGGACTTGCAAC
AGGCATTTATGTCGACTGAATTCCCGGGGTTGAATATTAAGGAGCTGCCC
GATGATGAGTTCGTGATGGCGGCCCGTCAATTCCTGCTGAACGACGAAGG
CTTGAGTCGTATGATTGGGGAGGAGAACACCTTGTCGGTGTTGATGGATG
AAGAGTTGTTGTTTAAGAATAACCCGACATTGACTGGGTTGATGTAAGAA
GGGTCGATGGAGGGAATGAAGCTGTGCGATGACGGGAGGGGGGGAGGAGG
AAGAGTAAGGAGGAATTGAATCGAAACGAATAGCAAAATGCCAGGCGCCT
TTTTGGAGGGAGGGATGGAGGGAGGAGGAAGGGAGAAAAGGAGGGATGTT
GGGAAAGATTGAATTCTATTTTCGTATCACGATGCGCCGGTCATCATTAT
ATTTCATGTTCCCACGTGTGATAGGAAACGAAATTAGTGGGAGAAAGAAG
AGAAAACAAATTCACCGAAAACAAAGGTAGAAAAGATAGCAAGAGAGAGG
AAAAGAGATTTTGTGCGTGCCTTCAAGAGCACAGGCAAGAATGAACATGG
AGGATAGAGAATTTGTCTCAAAAGGTTATTTCGTGTTCAGATGAAATATA
ATTGGGGGAGTGGGGGGAGGAAAAGATGAGGAAAGGGAATGTAGGGAAGA
ATCGGGGTCATCCAGGAAGAGGATAAGGAATCGAGCGGCAACGGAAAGGA
ATAAGAAAAATACACAGACCTACACGTACGCTCAGTCGCTTATGTCAGAA
CCGTCCGTGCCTTTTATTTTTGTCGAGGCTATTTCCTACCAGCATTGCTT
TCGGGTTTCCTTCGCGCCTTTGGCTTTTTCCTGTCGCTGCTTCTGGTACT
GCTACTGTCTGCTGATGTTGGTGCTTTGTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTTCTTCGGATATACATTTTCTTCCATGA
CACATGCCCTACCCCTCTCTCTCTTCATAGGGTTAGGGTTAGTTTGAGTG
TTTCTCTTGCTTGCCTTCAACCGGCCCAGTTGCTGCTGACGGTGCTGCTG
GTAGTACTGCTGGTAATGCTAATAAAATCTATTTTCTCTATCGTCCATTC
TTTTCTTCTCTTCAGACGTATACATCCTCCAATAAGAAATATCCGCCCCT
CTCCCCTCTAGTTATTTCTGGGTCTCCTTCAACCGGCCCATTCACCACCT
ATCTTCCTCTCTCTTTTCCGTCTTCTGCTGGTCCAGCTTGCTGATAACCG
CGCCTCGACAAGCCCCATCGTCAGTCGTTAGCATCGGCTGTCGAACTCGA
AAAATAGACAGCGACTCTTTTCTCTTTCGTGCTCGCCGCCCCTCCTTTCC
AATTCTACGTCATTTCCACCGTCTAGCTCGCTGGGGGCGGTGCCATGAAG
ACCCCTCCATCCTCACTCGCTATCATCATCGAAAACGGAAAGCTCTCAGA
ATGCTGCTGATCTCTTCCTGGTGCTGCTGCCGCTGCTGCTAGCATGGCCA
GATCCATGTCACCTCCTCCTTCTCCTTCTCCTCCTCCATCACTGACGCTC
CTTGCACGTTTGGGGTGCTGCCCGCTACCCGGGCGAGAGAGTGGTTTCCT
CTCGTCTTCGCTGGGTGAAAAGTCGAGCAATACGCTGGTGTTGGCAGAGC
AGCTGCTAGTGATCTTGCTGCTGTCGTCGATGCACATGGCTTCAAGGCCT
TGTTCGGGGGGTTCCATCTGATGGAGGAGCTTGCGCTTCCGTACAGAGCC
ACACGCATAATTGCCACTGCTGCTGCTGATGCTACTACTACTACTACTAC
TAATGTTGCTTCTGTTCGGCTCAACCACTATTCCTCGGCCCCGCGGAGGA
ATAAGCCCCCCCACACCTGTCACCGCACCACAGGCCGGCATCAGTGGTCT
TATTCCCTCCCTCTCTCCATCCCTCCAGCTAGTGTCACCCCGACTGCTGC
TCGTCCTGCTGTTGCTGCTGTTGCCCAGCCCCCACGCGCCATGTCCATTC
AGGACATCTCGAACTTGGCGGTGAAATCGTTCAGGGTTATGTGTATACGT
GTCTGCGGCGGCCATATTTACAGTCACGTCTAAATTAGGTTCCACCAATG
CGAGTTGCAAGCCGTAAATAAGGATACTAAGGGATAGGGTGGGCCGCCAG
TGTTCCCCTAGAATGGACAAAGCGACTAGACCGGAATCAGGACAGATGTT
GGGATGCCAGCAGCGGGAGTGGCAGGTGACATGGGGCGCTTTAAAAGGAT
ACGCCAGCGGTATATCGAGCTCGAAGTGGAGAGTCTCGCCTTCAAAAAAG
CTCCCTGGTGGGCCGAGCATCGACACACGCAAGTGGAGCAAGTTGCTGGT
GGGGCTGCTGGAGGCTTCCCCGCCCCAGAGCTGCACAGTACAATTTGGGG
GCAGCTCGTTTTGTTGCAGCTCTTTTTTTATCCGAATCAAAGCTCTGTCA
TATTGGTGTTGTTGTTGTTGTTGATGTTGTTGTTGTTGTTGTTGTTGTTG
TTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTT
GCTGCTGCTGCTGCTCATGTCGCCCCGTATGGATCATGTGGCGATGAGCC
TGGTTTGATTTGTGGTGACCGCCTTCGTGCATAGCTCCAACAGTGCTGGC
ACGACAAGGACACACACACTACTGGAGACGACGGGCCTGTAGAGTGTGAT
ATGGTTTTGGGGGGGGTGGCGAGTTTGAGTTGAGGAGGGCACACGAAATG
CCAGCTGCATCGGATGATTTTGCCAGGGCTCGTTTTCTTCGACCCTCGCG
TTGTATGTGCCCTATGCCCCCGTCCGTGCTCCACGCTCCACCGGTGTTAC
TCTCCTATTCTGATTGCACTGCCTCGGCTGCACCCGAGTGTCGACCTTTG
AAGGTACCCACCAAAGCCTAAAGGGAATAATTAGGTTTAGGTTGCATGCG
AAGTTCTAGGTTTGTAGGATATAGCTACGACAGAAAAGAACTATGTCCCC
G
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protein sequence of NO10G02550.1

>NO10G02550.1-protein ID=NO10G02550.1-protein|Name=NO10G02550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=255bp
MRILFPAALLAMVLGMAAASKPLLPRTMWERKARTDKRRVESGDNPALTS
TEELREMLSINEGTLAGFSKVAMDLVSKVNFGSADSSQIDHIFKTFKILK
QSPAYSAAMAPNSGLDMTDLGTKSKVLADAVGQFANLAINLRGGMASANA
MEGGINSKVLEFLKKGDEATLALAERVKDGDHEAIWDLQQAFMSTEFPGL
NIKELPDDEFVMAARQFLLNDEGLSRMIGEENTLSVLMDEELLFKNNPTL
TGLM*
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Synonyms
Publications