NO10G02470, NO10G02470 (gene) Nannochloropsis oceanica

Overview
NameNO10G02470
Unique NameNO10G02470
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length804
Alignment locationchr10:667728..668531 +

Link to JBrowse

Properties
Property NameValue
Description26S proteasome non-ATPase regulatory subunit 10
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:667728..668531 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004190aspartic-type endopeptidase activity
GO:0005515protein binding
GO:0046873metal ion transmembrane transporter activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO:0055085transmembrane transport
GO:0030001metal ion transport
Vocabulary: INTERPRO
TermDefinition
IPR036770Ankyrin_rpt-contain_sf
IPR001995Peptidase_A2_cat
IPR020683Ankyrin_rpt-contain_dom
IPR002110Ankyrin_rpt
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
[Close]
BLAST of NO10G02470 vs. NCBI_GenBank
Match: CRK38652.1 (hypothetical protein BN1708_007838 [Verticillium longisporum])

HSP 1 Score: 66.2 bits (160), Expect = 1.700e-7
Identity = 49/129 (37.98%), Postives = 64/129 (49.61%), Query Frame = 0 
Query:  140 ARLEKESISVREEALKTASVHGRMPLHLAAMAGSVRVVELLLSYGADANAFSQNETPLHL----SSNERVAKTLLVGGADPSIPHKQTKEVALHVAIRRRDICSVQTLLERPRHRRSINERDVDWTTLL 265
            +R E     +   AL  A   GRMPLH AA  G+V +V LLL YGAD  A S +E         S +  VA+ LL  GADP     +    ALH+A    D+  ++ LLER   R  ++ RD +  T L
Sbjct:   95 SRTEVVRFLLAHHALTDADAGGRMPLHEAASRGNVHIVRLLLDYGADIQALSTDERDALFFAVRSQDLAVAQLLLDRGADPDAYLSEDPPTALHLASELCDVEMMRMLLER---RAKVDLRDFNGATPL 220
The following BLAST results are available for this feature:
BLAST of NO10G02470 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
CRK38652.11.700e-737.98hypothetical protein BN1708_007838 [Verticillium l... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G02470.1NO10G02470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G02470.1NO10G02470.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G02470 ID=NO10G02470|Name=NO10G02470|organism=Nannochloropsis oceanica|type=gene|length=804bp
ATGGAGGAAACAACGAGAGGAAGGAAACTTGAGGGCGCCTATGCCCTCCG
AAGCAACCCGGGCGGCTTTACCGTTGAGAGAAATGCTGGCGCAAAAAACA
ATGCGATCGCGCATATTTCCTATGGTTTAAACGGTCTTGGGGAAGGCCAA
ACCCTGGGAAAGGAGGAAGCTGAAGCGAGCGGGTATGCGCCAGAAGCGGT
GACGGCCGCAGCATCGACGCTAGCTGCAACCAAGCTTTCCCTCCCTTCCT
TCTCTTTGGCCTCCTTCACTCCTCCACCGAGACCTGCATCCGCCCTCCGA
TCCCCCCTCGCCCCAACCTCATCCTCTCTCCCCGACAATACCTCCTTGGA
CCTCTCCCTCTTCCTCCTAGACCACGCCAGCGTCACAGAATCCGATGAGC
TCCTGATTATGCTCGAGGCACGCTTAGAGAAGGAGTCTATATCAGTACGA
GAAGAGGCCCTCAAAACCGCATCTGTCCACGGCCGCATGCCTTTACACCT
GGCAGCAATGGCAGGGTCGGTTCGCGTGGTAGAGTTGCTGCTCTCTTACG
GCGCAGATGCCAACGCATTCAGTCAAAATGAGACTCCCCTCCATCTGAGC
AGCAATGAAAGGGTTGCGAAAACCCTACTGGTGGGAGGAGCCGACCCTTC
CATCCCCCACAAGCAAACAAAAGAAGTAGCGCTGCATGTAGCCATCCGAC
GTCGTGACATTTGCTCAGTCCAAACTCTGTTAGAGCGCCCTCGTCACCGG
CGGAGCATCAACGAACGCGACGTGGATTGGACCACCCTTCTCCATCTCGC
CTGA
back to top

protein sequence of NO10G02470.1

>NO10G02470.1-protein ID=NO10G02470.1-protein|Name=NO10G02470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=268bp
MEETTRGRKLEGAYALRSNPGGFTVERNAGAKNNAIAHISYGLNGLGEGQ
TLGKEEAEASGYAPEAVTAAASTLAATKLSLPSFSLASFTPPPRPASALR
SPLAPTSSSLPDNTSLDLSLFLLDHASVTESDELLIMLEARLEKESISVR
EEALKTASVHGRMPLHLAAMAGSVRVVELLLSYGADANAFSQNETPLHLS
SNERVAKTLLVGGADPSIPHKQTKEVALHVAIRRRDICSVQTLLERPRHR
RSINERDVDWTTLLHLA*
back to top
Synonyms
Publications