NO10G02440, NO10G02440 (gene) Nannochloropsis oceanica

Overview
NameNO10G02440
Unique NameNO10G02440
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1071
Alignment locationchr10:663989..665059 -

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Properties
Property NameValue
DescriptionLate embryogenesis abundant protein (LEA) family protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:663989..665059 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR025423DUF4149
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO10G02440 vs. NCBI_GenBank
Match: EWM25431.1 (protein of unknown function DUF4149 [Nannochloropsis gaditana])

HSP 1 Score: 329.7 bits (844), Expect = 8.800e-87
Identity = 176/266 (66.17%), Postives = 210/266 (78.95%), Query Frame = 0
Query:   16 MKTLCTTVLLLTIAAELLPSSKAFKFPVGARLMGMPSSLRLTSARRTPSTTTLPSFFPKTKALHASDAAVAPSDDAGIGQVWIEPAFHNKLSVRILAVLAGVGFAMKSSGVVVPKLAATYVHLMMYGAGFGSLMYTTFVLGLVMFKNLPRQTFGRLQSKLFPIYFAWSSFTLAMQLLTGSVMGLPVKAMQWLGASLATSLINSLFLEPAATKVMFERYALERQNKKEAPEYKDLAKKFNGLHGMSSLVNLVAVVGGFVHAYYLALL 282
            MK  C+ +LL++ AA LLP  +AFK P+GARL    SS  L      PS+  +      ++ L ASDA  A  D AG+ Q WIEPAFHNKLSVRILAVLAG+  AMK+SG+ +PK AATY+HL+M+GA FGS+MYTTFVLGLVM K+LPRQTFGRLQSKLFPIYFAWS+  LA+QLLTG  +GLP KAM+WL ASLA +LINSLFLEPA+TKVMF+RYALE+QN++E  EYK+LAK+F  LHG SSLVNLV VVGGFVHAYYL+L+
Sbjct:    1 MKKPCSVLLLVSTAALLLPLHEAFKIPIGARLARTSSSSTLKRWPVPPSSNLVQGAGVVSQVLRASDAKGAEGDSAGV-QPWIEPAFHNKLSVRILAVLAGISIAMKNSGMALPKSAATYIHLLMFGANFGSVMYTTFVLGLVMIKHLPRQTFGRLQSKLFPIYFAWSALALALQLLTGKTLGLPAKAMRWLAASLAAALINSLFLEPASTKVMFQRYALEKQNRREETEYKELAKRFGALHGASSLVNLVTVVGGFVHAYYLSLM 265          
BLAST of NO10G02440 vs. NCBI_GenBank
Match: CEM08876.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 169.5 bits (428), Expect = 1.500e-38
Identity = 94/188 (50.00%), Postives = 124/188 (65.96%), Query Frame = 0
Query:   95 QVWIEPAFHNKLSVRILAVLAGVGFAMKSSGVVVPKLAATYVHLMMYGAGFGSLMYTTFVLGLVMFKNLPRQTFGRLQSKLFPIYFAWSSFTLAMQLLTGSVMGLPVKAMQW-LGASLATSLINSLFLEPAATKVMFERYALERQNKKEAPEYKDLAKKFNGLHGMSSLVNLVAVVGGFVHAYYLALL 282
            QVW+ PA HN+ SVR+LA+L+ +  A   S V V K    +VHL+ Y    GS++YTTFV G+ MF+NLPR+TFGRLQSKLFP+YF   +  L + L TG    LP +AM   L  +L  +L N   LEP +T++MF+RY +E Q +K+ PEYK LAK F   HG+SSL NL+A+ GG  H + LA L
Sbjct:  103 QVWVAPAVHNRNSVRLLALLSTLLLA-SGSTVFVSKQLTLFVHLLAYATWLGSVIYTTFVAGITMFRNLPRKTFGRLQSKLFPLYFQLCTGMLIVLLTTGGASVLPNRAMMANLAVALVMTLANLFVLEPKSTEIMFKRYEMEDQGRKDDPEYKALAKGFGKFHGLSSLTNLIALCGGVAHGWTLASL 289          
BLAST of NO10G02440 vs. NCBI_GenBank
Match: XP_002184056.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC44234.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 167.9 bits (424), Expect = 4.400e-38
Identity = 97/210 (46.19%), Postives = 129/210 (61.43%), Query Frame = 0
Query:   76 KALHASDAAVAPSDDAGIGQVWIEPAFHNKLSVRILAVLAGVGFA-MKSSGVVVPKLAATYVHLMMYGAGFGSLMYTTFVLGLVMFKNLPRQTFGRLQSKLFPIYFAWSSFTLAMQLLTGSVMGL-PVKAMQWLGASLATSLINSLFLEPAATKVMFERYALERQNKKEAPEYKDLAKKFNGLHGMSSLVNLVAVVGGFVHAYYLALLFV 284
            K   ++ AA AP D     + W +   HN  + R LA+L  V  A  KSS   +P  A   +H++ +   FG++ YTTFVLG+ MFKNLPRQTFG+LQ+KLFP YFA SS  L +QL T   M +   K+M  LG +LA + +N  +LEP +T  M ERY+LE + +KE+ EYK L  +F   HGMSSL NLVA+ GG  HA Y+A   +
Sbjct:   42 KTASSATAASAPVDT----EEWTKKRLHNTAAFRSLAILGAVAVAGTKSSAQFLPAQATASIHVLSFATWFGTVAYTTFVLGITMFKNLPRQTFGKLQAKLFPTYFALSSVALVLQLATAKAMPVFASKSMTALGVALAMTALNQFYLEPVSTINMMERYSLESRGEKESNEYKRLKAQFGKFHGMSSLTNLVALCGGVAHAIYMAAALI 247          
BLAST of NO10G02440 vs. NCBI_GenBank
Match: GAX25969.1 (hypothetical protein FisN_4Hh547 [Fistulifera solaris])

HSP 1 Score: 156.8 bits (395), Expect = 1.000e-34
Identity = 92/207 (44.44%), Postives = 126/207 (60.87%), Query Frame = 0
Query:   85 VAPSDDAGIGQVWIEPAFHNKLSVRILAVLAGV---GFAMKSSGVVVPKLAATYVHLMMYGAGFGSLMYTTFVLGLVMFKNLPRQTFGRLQSKLFPIYFAWSSFTLAMQLLT-GSVMGLPVKA----MQWLGASLATSLINSLFLEPAATKVMFERYALERQNKKEAPEYKDLAKKFNGLHGMSSLVNLVAVVGGFVHAYYLALLFV 284
            ++P   A   + W +P  HN  + R +A+L+ +   GF+ KS   ++P      VH + +   FG++ YTTFV G+ MFKNLPRQTFG+LQ+KLFP YFA SSFTLA+QL+T  S+  +  KA     + LG +L  +LIN  FLEP +T  M ERY LE + ++E+  YK L   F   HGMSSL NL+ +  G  HA YL+   V
Sbjct:   27 LSPRMSAVSSEEWTKPRLHNTATFRTIALLSALLAAGFSSKSPLKLLPAQVLGSVHTISFATWFGTVAYTTFVAGITMFKNLPRQTFGKLQAKLFPKYFALSSFTLALQLITLKSLKAMTGKAAHSSAKALGVALLMTLINQFFLEPKSTSNMMERYELEDKGEQESDRYKTLKANFGKFHGMSSLTNLIGLCAGVAHAVYLSATLV 233          
BLAST of NO10G02440 vs. NCBI_GenBank
Match: GAX24412.1 (hypothetical protein FisN_4Lh547 [Fistulifera solaris])

HSP 1 Score: 155.6 bits (392), Expect = 2.300e-34
Identity = 90/207 (43.48%), Postives = 127/207 (61.35%), Query Frame = 0
Query:   85 VAPSDDAGIGQVWIEPAFHNKLSVRILAVLAGV---GFAMKSSGVVVPKLAATYVHLMMYGAGFGSLMYTTFVLGLVMFKNLPRQTFGRLQSKLFPIYFAWSSFTLAMQLLT-GSVMGLPVKA----MQWLGASLATSLINSLFLEPAATKVMFERYALERQNKKEAPEYKDLAKKFNGLHGMSSLVNLVAVVGGFVHAYYLALLFV 284
            + P+  A   + W +P  HN  + R +A+L+ +   GF+ KS   ++P      +H + +   FG++ YTTFV G+ MFKNLPRQTFG+LQ+KLFP YFA SSFTLA+QL+T  S+  +  KA     + LG +L  +LIN  +LEP +T  M ERY LE + ++E+  YK L   F   HGMSSL NL+ +  G VHA +L+   V
Sbjct:    8 LTPTMSAVSSEEWTKPRLHNTATFRTIALLSALLAAGFSSKSPLKLLPAQVLGSIHTISFATWFGTVAYTTFVAGITMFKNLPRQTFGKLQAKLFPKYFALSSFTLALQLITLKSLKAMTGKAAHSSAKALGVALLMTLINQFYLEPKSTSNMMERYELEDKGEQESDRYKTLKASFGKFHGMSSLTNLIGLCAGVVHAVFLSATLV 214          
BLAST of NO10G02440 vs. NCBI_GenBank
Match: CBN73833.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 151.8 bits (382), Expect = 3.300e-33
Identity = 87/191 (45.55%), Postives = 122/191 (63.87%), Query Frame = 0
Query:   90 DAGIGQVWIEPAFHNKLSVRILAVLAGVGFAMKSSGVVVPKLAATYVHLMMYGAGFGSLMYTTFVLGLVMFKNLPRQTFGRLQSKLFPIYFAWSSFT-LAMQLLTGSVMGLPVKAMQWLGASLATSLINSLFLEPAATKVMFERYALERQNKKEAPEYKDLAKKFNGLHGMSSLVNLVAVVGGFVHAYYLA 280
            D    Q +I+PA HNK  VR+ A+L   G A K + ++VP   A  VH++   A  GS ++TTF  G+ M +NLPRQTFG+LQSKLFP+YF ++  + LA+ ++ G    L  +A   L  SL ++L+N + LEP +T +M ERY LE   KK++ EYK+L K F   HGMSS  NL A++G FV+A+ LA
Sbjct:   61 DPSAQQAFIQPAIHNKNPVRVAAILTAAGLASKGA-MLVPGNLAKMVHMVALNAWMGSTLWTTFFAGITMMRNLPRQTFGKLQSKLFPLYFQFNFVSILAIYIIRG--CPLRTRAGVTLLVSLFSTLLNLVLLEPKSTSIMLERYKLEDDKKKDSDEYKELGKTFGKFHGMSSFANLGALIGSFVYAWELA 248          
BLAST of NO10G02440 vs. NCBI_GenBank
Match: PRW60938.1 (Transmembrane 205 [Chlorella sorokiniana])

HSP 1 Score: 149.4 bits (376), Expect = 1.600e-32
Identity = 102/259 (39.38%), Postives = 147/259 (56.76%), Query Frame = 0
Query:   24 LLLTIAAELLPSSK-AFKFPVGARLMGMPSSLRLTSARRTPSTTTLPSFFPKTKALHASDAAVAPSDDAGIGQVWIEPAFHNKLSVRILAVLAGVGFAMKSSGVVVPKLAATYVHLMMYGAGFGSLMYTTFVLGLVMFKNLPRQTFGRLQSKLFPIYFAWSSFTLAMQL--LTGSVMGLPVKAMQWLGASLATSLINSLFLEPAATKVMFERYALERQNKKEAPEYKDLAKKFNGLHGMSSLVNLVAVVGGFVHAYYLA 280
            +L T A  L+ SS+ A + P    L  + + LR  S+ R  +     +  P +   H   A+   +DD   G +  +P+  NK   R+ AV A V  A + +   +P   A +VHL+ Y    G++++TTFV G+VMFKNLPRQ FGR+QSKLFPIYF  SS   A+QL  L      +P K +  LG  LA+SL++ L +EP  T++MF+RY LE   +++    K LAK+F   HG+SSL+NL  +V    H Y+LA
Sbjct:    1 MLATTARPLVLSSQAAARHPSSPALKSLSTPLRSMSSSRAATRRRSATASPTS---HRVSASATVNDDVQ-GAMLDKPSVANKNWARVAAVAATVAAASRGTS-YLPATGAAFVHLLAYSTWLGAIVWTTFVAGIVMFKNLPRQMFGRVQSKLFPIYFGLSSACSAVQLGVLLFGAAAVPQKQLVLLGLGLASSLLSFLVVEPLCTRIMFQRYDLENAAERDEGTIKALAKQFGKWHGISSLINLATLVVAVGHGYWLA 254          
BLAST of NO10G02440 vs. NCBI_GenBank
Match: XP_002287805.1 (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >EED95248.1 predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 138.3 bits (347), Expect = 3.800e-29
Identity = 74/146 (50.68%), Postives = 100/146 (68.49%), Query Frame = 0
Query:  136 VHLMMYGAGFGSLMYTTFVLGLVMFKNLPRQTFGRLQSKLFPIYFAWSSFTLAMQLLTGSVMG--LPVKAMQWLGASLATSLINSLFLEPAATKVMFERYALERQNKKEAPEYKDLAKKFNGLHGMSSLVNLVAVVGGFVHAYYLA 280
            +HL+ +   FG+++YTTFV G+ MFKNLPR+ FG LQSKLFP+YF   +  + +Q+LT + M   L   +   LG S A +L+N L+LEP +T+VMF+RY LE   K+++ EY  LAK F   HGMSSL NLVA++GG VH   LA
Sbjct:    2 LHLLSFSTWFGTVVYTTFVAGITMFKNLPRRVFGSLQSKLFPLYFQLCTSMIGIQILTLTSMPDILSKVSEVSLGISFAATLLNLLYLEPTSTQVMFDRYDLEDDGKRDSDEYGKLAKSFGAYHGMSSLANLVALIGGIVHGVRLA 147          
BLAST of NO10G02440 vs. NCBI_GenBank
Match: PSC74334.1 (Transmembrane 205 [Micractinium conductrix])

HSP 1 Score: 136.0 bits (341), Expect = 1.900e-28
Identity = 82/185 (44.32%), Postives = 114/185 (61.62%), Query Frame = 0
Query:  100 PAFHNKLSVRILAVLAGVGFAMKSSGVVVPKLAATYVHLMMYGAGFGSLMYTTFVLGLVMFKNLPRQTFGRLQSKLFPIYFAWSSFTLAMQL--LTGSVMGLPVKAMQWLGASLATSLINSLFLEPAATKVMFERYALER-QNKKEAPEYKDLAKKFNGLHGMSSLVNLVAVVGGFVHAYYLALL 282
            P+  NK  VR+LAV A V  A + +   +P     +VHL+ YG+  G++++TTF+ G+VMFKNLPRQ FGR+QSKLFP+YF  S+    +QL  L  +    P K    LG  LA+SL+N L +EP  T+VMF+RY LE     ++    K L K+F   HG+SSL+NL  +V    H ++LA L
Sbjct:   74 PSAANKNIVRLLAVSAVVAAAARGT-AYLPTAGIAFVHLLAYGSWLGAIVWTTFIAGIVMFKNLPRQMFGRVQSKLFPLYFGLSAAASTIQLGVLAFAAANAPQKQFVLLGIGLASSLLNLLIVEPQCTRVMFQRYDLENASGPRDEGAIKALQKQFGKWHGISSLINLATLVVAVGHGWWLASL 257          
BLAST of NO10G02440 vs. NCBI_GenBank
Match: XP_005845520.1 (hypothetical protein CHLNCDRAFT_136618 [Chlorella variabilis] >EFN53418.1 hypothetical protein CHLNCDRAFT_136618 [Chlorella variabilis])

HSP 1 Score: 130.6 bits (327), Expect = 7.900e-27
Identity = 79/191 (41.36%), Postives = 114/191 (59.69%), Query Frame = 0
Query:   92 GIGQVWIEPAFHNKLSVRILAVLAGVGFAMKSSGVVVPKLAATYVHLMMYGAGFGSLMYTTFVLGLVMFKNLPRQTFGRLQSKLFPIYFAWSSFTLAMQL--LTGSVMGLPVKAMQWLGASLATSLINSLFLEPAATKVMFERYALE-RQNKKEAPEYKDLAKKFNGLHGMSSLVNLVAVVGGFVHAYYLA 280
            G+    +EP+  NK  VR+L + A V  A + +   +P     +VHL+ YG   GSL++T+FV G+ M ++LPRQTFGRLQ++LFP YFA S+   A+QL  L  +    P K +  +G  LATSL++ L +EP  TKVMF+RY LE     ++      L K F   HG+SSL+NL  ++    H ++LA
Sbjct:   30 GVQGEMLEPSTSNKRWVRLLVLSATVAAAARGT-AYLPTAGVAFVHLLAYGIWLGSLVWTSFVAGITMIRHLPRQTFGRLQARLFPKYFALSAACTAIQLGVLLFAAAAPPAKQLVLVGLGLATSLLSLLVVEPITTKVMFQRYELESAAGPRDEAAITALKKSFGNWHGISSLINLGTLITAIGHGWWLA 219          
The following BLAST results are available for this feature:
BLAST of NO10G02440 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25431.18.800e-8766.17protein of unknown function DUF4149 [Nannochlorops... [more]
CEM08876.11.500e-3850.00unnamed protein product [Vitrella brassicaformis C... [more]
XP_002184056.14.400e-3846.19predicted protein [Phaeodactylum tricornutum CCAP ... [more]
GAX25969.11.000e-3444.44hypothetical protein FisN_4Hh547 [Fistulifera sola... [more]
GAX24412.12.300e-3443.48hypothetical protein FisN_4Lh547 [Fistulifera sola... [more]
CBN73833.13.300e-3345.55conserved unknown protein [Ectocarpus siliculosus][more]
PRW60938.11.600e-3239.38Transmembrane 205 [Chlorella sorokiniana][more]
XP_002287805.13.800e-2950.68predicted protein, partial [Thalassiosira pseudona... [more]
PSC74334.11.900e-2844.32Transmembrane 205 [Micractinium conductrix][more]
XP_005845520.17.900e-2741.36hypothetical protein CHLNCDRAFT_136618 [Chlorella ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001112NSK001112Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G02440.1NO10G02440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585986gene_3969Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100005g9gene5042Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G02440.1NO10G02440.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G02440 ID=NO10G02440|Name=NO10G02440|organism=Nannochloropsis oceanica|type=gene|length=1071bp
ATGACTCACCTCACCTCAACACAGGCTTCGTCCCCAACCGTGAGAATGAA
GACGCTGTGCACCACAGTCCTTCTTCTGACCATAGCGGCCGAGCTACTGC
CGAGCTCCAAGGCCTTTAAGTTTCCCGTGGGTGCACGCCTGATGGGGATG
CCATCGTCCTTGCGCTTGACCAGTGCTCGCCGCACTCCTTCCACGACTAC
TTTGCCCTCTTTCTTCCCCAAAACGAAGGCCCTGCATGCGTCCGACGCCG
CCGTGGCGCCGTCCGACGATGCGGGTATCGGTCAGGTATGGATTGAACCT
GCCTTTCACAACAAGCTGAGCGTGCGTATCCTGGCTGTGCTTGCCGGCGT
GGGTTTTGCCATGAAATCTTCGGGCGTTGTGGTGCCCAAGCTTGCCGCCA
CGTACGTGCATCTGATGATGTATGGGGCGGGTTTCGGGAGCCTCATGTAC
ACGACGTTCGTGCTAGGCCTGGTCATGTTCAAGAATTTACCACGACAGAC
CTTTGGGAGGTTGCAAAGCAAGgtgcgtgggtgtgaggatgcggggatgt
atggttgattccagcctgggggtgttttgtgggatgtgcttttgatggct
gatttccatgtctttgggggagaacgcgtagtgtctgcttgttttatacg
tatcctttgaaacaggcatgcccgacagagaaccactctgtcctcacact
ccctcacttctctccttcctcttcctccctgcctttctcagCTTTTCCCC
ATCTACTTCGCCTGGTCCAGCTTCACCCTTGCCATGCAGCTTCTCACGGG
CTCAGTCATGGGATTACCTGTCAAGGCAATGCAATGGTTGGGTGCTTCCC
TCGCCACTTCATTGATTAACTCTTTGTTTCTGGAACCGGCAGCTACGAAG
GTAATGTTTGAGAGGTACGCTTTGGAGAGGCAGAATAAAAAGGAAGCTCC
TGAGTACAAGGATCTGGCCAAGAAATTCAATGGATTGCATGGTATGTCAT
CGCTGGTGAATCTGGTGGCCGTTGTGGGTGGTTTCGTGCATGCCTATTAC
TTGGCTTTGTTGTTCGTTTAG
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protein sequence of NO10G02440.1

>NO10G02440.1-protein ID=NO10G02440.1-protein|Name=NO10G02440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=284bp
MTHLTSTQASSPTVRMKTLCTTVLLLTIAAELLPSSKAFKFPVGARLMGM
PSSLRLTSARRTPSTTTLPSFFPKTKALHASDAAVAPSDDAGIGQVWIEP
AFHNKLSVRILAVLAGVGFAMKSSGVVVPKLAATYVHLMMYGAGFGSLMY
TTFVLGLVMFKNLPRQTFGRLQSKLFPIYFAWSSFTLAMQLLTGSVMGLP
VKAMQWLGASLATSLINSLFLEPAATKVMFERYALERQNKKEAPEYKDLA
KKFNGLHGMSSLVNLVAVVGGFVHAYYLALLFV*
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Synonyms
Publications