NO10G02440.1, NO10G02440.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G02440.1
Unique NameNO10G02440.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length852
Alignment locationchr10:663989..665059 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:663989..665059 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO10G02440.1 vs.
Match: EWM25431.1 (protein of unknown function DUF4149 [Nannochloropsis gaditana])

HSP 1 Score: 329.7 bits (844), Expect = 8.800e-87
Identity = 176/266 (66.17%), Postives = 210/266 (78.95%), Query Frame = 0
Query:   16 MKTLCTTVLLLTIAAELLPSSKAFKFPVGARLMGMPSSLRLTSARRTPSTTTLPSFFPKTKALHASDAAVAPSDDAGIGQVWIEPAFHNKLSVRILAVLAGVGFAMKSSGVVVPKLAATYVHLMMYGAGFGSLMYTTFVLGLVMFKNLPRQTFGRLQSKLFPIYFAWSSFTLAMQLLTGSVMGLPVKAMQWLGASLATSLINSLFLEPAATKVMFERYALERQNKKEAPEYKDLAKKFNGLHGMSSLVNLVAVVGGFVHAYYLALL 282
            MK  C+ +LL++ AA LLP  +AFK P+GARL    SS  L      PS+  +      ++ L ASDA  A  D AG+ Q WIEPAFHNKLSVRILAVLAG+  AMK+SG+ +PK AATY+HL+M+GA FGS+MYTTFVLGLVM K+LPRQTFGRLQSKLFPIYFAWS+  LA+QLLTG  +GLP KAM+WL ASLA +LINSLFLEPA+TKVMF+RYALE+QN++E  EYK+LAK+F  LHG SSLVNLV VVGGFVHAYYL+L+
Sbjct:    1 MKKPCSVLLLVSTAALLLPLHEAFKIPIGARLARTSSSSTLKRWPVPPSSNLVQGAGVVSQVLRASDAKGAEGDSAGV-QPWIEPAFHNKLSVRILAVLAGISIAMKNSGMALPKSAATYIHLLMFGANFGSVMYTTFVLGLVMIKHLPRQTFGRLQSKLFPIYFAWSALALALQLLTGKTLGLPAKAMRWLAASLAAALINSLFLEPASTKVMFQRYALEKQNRREETEYKELAKRFGALHGASSLVNLVTVVGGFVHAYYLSLM 265          
The following BLAST results are available for this feature:
BLAST of NO10G02440.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25431.18.800e-8766.17protein of unknown function DUF4149 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G02440NO10G02440Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G02440.1NO10G02440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G02440.1.cds1NO10G02440.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G02440.1.cds2NO10G02440.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G02440.1 ID=NO10G02440.1|Name=NO10G02440.1|organism=Nannochloropsis oceanica|type=mRNA|length=852bp
ATGACTCACCTCACCTCAACACAGGCTTCGTCCCCAACCGTGAGAATGAA
GACGCTGTGCACCACAGTCCTTCTTCTGACCATAGCGGCCGAGCTACTGC
CGAGCTCCAAGGCCTTTAAGTTTCCCGTGGGTGCACGCCTGATGGGGATG
CCATCGTCCTTGCGCTTGACCAGTGCTCGCCGCACTCCTTCCACGACTAC
TTTGCCCTCTTTCTTCCCCAAAACGAAGGCCCTGCATGCGTCCGACGCCG
CCGTGGCGCCGTCCGACGATGCGGGTATCGGTCAGGTATGGATTGAACCT
GCCTTTCACAACAAGCTGAGCGTGCGTATCCTGGCTGTGCTTGCCGGCGT
GGGTTTTGCCATGAAATCTTCGGGCGTTGTGGTGCCCAAGCTTGCCGCCA
CGTACGTGCATCTGATGATGTATGGGGCGGGTTTCGGGAGCCTCATGTAC
ACGACGTTCGTGCTAGGCCTGGTCATGTTCAAGAATTTACCACGACAGAC
CTTTGGGAGGTTGCAAAGCAAGCTTTTCCCCATCTACTTCGCCTGGTCCA
GCTTCACCCTTGCCATGCAGCTTCTCACGGGCTCAGTCATGGGATTACCT
GTCAAGGCAATGCAATGGTTGGGTGCTTCCCTCGCCACTTCATTGATTAA
CTCTTTGTTTCTGGAACCGGCAGCTACGAAGGTAATGTTTGAGAGGTACG
CTTTGGAGAGGCAGAATAAAAAGGAAGCTCCTGAGTACAAGGATCTGGCC
AAGAAATTCAATGGATTGCATGGTATGTCATCGCTGGTGAATCTGGTGGC
CGTTGTGGGTGGTTTCGTGCATGCCTATTACTTGGCTTTGTTGTTCGTTT
AG
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protein sequence of NO10G02440.1

>NO10G02440.1-protein ID=NO10G02440.1-protein|Name=NO10G02440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=284bp
MTHLTSTQASSPTVRMKTLCTTVLLLTIAAELLPSSKAFKFPVGARLMGM
PSSLRLTSARRTPSTTTLPSFFPKTKALHASDAAVAPSDDAGIGQVWIEP
AFHNKLSVRILAVLAGVGFAMKSSGVVVPKLAATYVHLMMYGAGFGSLMY
TTFVLGLVMFKNLPRQTFGRLQSKLFPIYFAWSSFTLAMQLLTGSVMGLP
VKAMQWLGASLATSLINSLFLEPAATKVMFERYALERQNKKEAPEYKDLA
KKFNGLHGMSSLVNLVAVVGGFVHAYYLALLFV*
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mRNA from alignment at chr10:663989..665059-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G02440.1 ID=NO10G02440.1|Name=NO10G02440.1|organism=Nannochloropsis oceanica|type=mRNA|length=1071bp|location=Sequence derived from alignment at chr10:663989..665059- (Nannochloropsis oceanica)
ATGACTCACCTCACCTCAACACAGGCTTCGTCCCCAACCGTGAGAATGAA GACGCTGTGCACCACAGTCCTTCTTCTGACCATAGCGGCCGAGCTACTGC CGAGCTCCAAGGCCTTTAAGTTTCCCGTGGGTGCACGCCTGATGGGGATG CCATCGTCCTTGCGCTTGACCAGTGCTCGCCGCACTCCTTCCACGACTAC TTTGCCCTCTTTCTTCCCCAAAACGAAGGCCCTGCATGCGTCCGACGCCG CCGTGGCGCCGTCCGACGATGCGGGTATCGGTCAGGTATGGATTGAACCT GCCTTTCACAACAAGCTGAGCGTGCGTATCCTGGCTGTGCTTGCCGGCGT GGGTTTTGCCATGAAATCTTCGGGCGTTGTGGTGCCCAAGCTTGCCGCCA CGTACGTGCATCTGATGATGTATGGGGCGGGTTTCGGGAGCCTCATGTAC ACGACGTTCGTGCTAGGCCTGGTCATGTTCAAGAATTTACCACGACAGAC CTTTGGGAGGTTGCAAAGCAAGGTGCGTGGGTGTGAGGATGCGGGGATGT ATGGTTGATTCCAGCCTGGGGGTGTTTTGTGGGATGTGCTTTTGATGGCT GATTTCCATGTCTTTGGGGGAGAACGCGTAGTGTCTGCTTGTTTTATACG TATCCTTTGAAACAGGCATGCCCGACAGAGAACCACTCTGTCCTCACACT CCCTCACTTCTCTCCTTCCTCTTCCTCCCTGCCTTTCTCAGCTTTTCCCC ATCTACTTCGCCTGGTCCAGCTTCACCCTTGCCATGCAGCTTCTCACGGG CTCAGTCATGGGATTACCTGTCAAGGCAATGCAATGGTTGGGTGCTTCCC TCGCCACTTCATTGATTAACTCTTTGTTTCTGGAACCGGCAGCTACGAAG GTAATGTTTGAGAGGTACGCTTTGGAGAGGCAGAATAAAAAGGAAGCTCC TGAGTACAAGGATCTGGCCAAGAAATTCAATGGATTGCATGGTATGTCAT CGCTGGTGAATCTGGTGGCCGTTGTGGGTGGTTTCGTGCATGCCTATTAC TTGGCTTTGTTGTTCGTTTAG
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Coding sequence (CDS) from alignment at chr10:663989..665059-

>NO10G02440.1 ID=NO10G02440.1|Name=NO10G02440.1|organism=Nannochloropsis oceanica|type=CDS|length=852bp|location=Sequence derived from alignment at chr10:663989..665059- (Nannochloropsis oceanica)
ATGACTCACCTCACCTCAACACAGGCTTCGTCCCCAACCGTGAGAATGAA
GACGCTGTGCACCACAGTCCTTCTTCTGACCATAGCGGCCGAGCTACTGC
CGAGCTCCAAGGCCTTTAAGTTTCCCGTGGGTGCACGCCTGATGGGGATG
CCATCGTCCTTGCGCTTGACCAGTGCTCGCCGCACTCCTTCCACGACTAC
TTTGCCCTCTTTCTTCCCCAAAACGAAGGCCCTGCATGCGTCCGACGCCG
CCGTGGCGCCGTCCGACGATGCGGGTATCGGTCAGGTATGGATTGAACCT
GCCTTTCACAACAAGCTGAGCGTGCGTATCCTGGCTGTGCTTGCCGGCGT
GGGTTTTGCCATGAAATCTTCGGGCGTTGTGGTGCCCAAGCTTGCCGCCA
CGTACGTGCATCTGATGATGTATGGGGCGGGTTTCGGGAGCCTCATGTAC
ACGACGTTCGTGCTAGGCCTGGTCATGTTCAAGAATTTACCACGACAGAC
CTTTGGGAGGTTGCAAAGCAAGCTTTTCCCCATCTACTTCGCCTGGTCCA
GCTTCACCCTTGCCATGCAGCTTCTCACGGGCTCAGTCATGGGATTACCT
GTCAAGGCAATGCAATGGTTGGGTGCTTCCCTCGCCACTTCATTGATTAA
CTCTTTGTTTCTGGAACCGGCAGCTACGAAGGTAATGTTTGAGAGGTACG
CTTTGGAGAGGCAGAATAAAAAGGAAGCTCCTGAGTACAAGGATCTGGCC
AAGAAATTCAATGGATTGCATGGTATGTCATCGCTGGTGAATCTGGTGGC
CGTTGTGGGTGGTTTCGTGCATGCCTATTACTTGGCTTTGTTGTTCGTTT
AG
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Synonyms
Publications