NO10G02180, NO10G02180 (gene) Nannochloropsis oceanica

Overview
NameNO10G02180
Unique NameNO10G02180
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1061
Alignment locationchr10:598590..599650 -

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Properties
Property NameValue
DescriptionMitochondrial import inner membrane translocase subunit tim23
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:598590..599650 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO10G02180 vs. NCBI_GenBank
Match: EWM25356.1 (mitochondrial import inner membrane translocase subunit tim23 [Nannochloropsis gaditana])

HSP 1 Score: 331.3 bits (848), Expect = 2.100e-87
Identity = 160/180 (88.89%), Postives = 169/180 (93.89%), Query Frame = 0
Query:   18 DSDLPRIDLFGTGNVDLRTVAPLYGVTSEEEPDYLDYDIKGRGTVERMFLYSGSSYLTGILTGGVLGGRVGWKTAPSPRFWLRLNSVMNGAGKLGSKWGNNAGVFALMYSLSESALDHFETDQFLGGHQATNPVLAGAISGLLYKCTAAPRTAALALVLGGAGAGAFYVMRGQMERFYYR 198
            D +LP+IDLFG GNVDLRTVAPLYGV SEEEPDYLDYDIKGRGTVERMFLYSGSSYLTGILTGG+LGGR GWKTAPSPRFWLRLNSVMNGAGKLGSKWGNNAGVFALMYSLSES LDHFETD+ LGGHQA NPVL+GAISGLLYK TAAPRTAALA VLGG GAG FYV+RGQ++RF+YR
Sbjct:   80 DDNLPKIDLFGGGNVDLRTVAPLYGVASEEEPDYLDYDIKGRGTVERMFLYSGSSYLTGILTGGILGGRRGWKTAPSPRFWLRLNSVMNGAGKLGSKWGNNAGVFALMYSLSESLLDHFETDKVLGGHQAVNPVLSGAISGLLYKSTAAPRTAALASVLGGFGAGMFYVIRGQLDRFFYR 259          
BLAST of NO10G02180 vs. NCBI_GenBank
Match: CBJ48753.1 (Mitochondrial import inner membrane translocase subunit TIM23 homolog [Ectocarpus siliculosus])

HSP 1 Score: 134.4 bits (337), Expect = 3.800e-28
Identity = 78/163 (47.85%), Postives = 102/163 (62.58%), Query Frame = 0
Query:   31 NVDLRTVAPLYGVTSE-EEPDYLDYDIKGRGTVERMFLYSGSSYLTGILTGGVLGGRVGWKTAPSPRFWLRLNSVMNGAGKLGSKWGNNAGVFALMYSLSESALDHFETDQF-----LGGHQATNPVLAGAISGLLYKCTAAPRTAALALVLGGAGAGAFYVM 188
            NVDL   + +YG  ++ +EP+YLDY+IKGRG  ERM   +G+ Y+TGIL GG  G R G+  AP+ R  + LNS+MN AGK GS +GN   V A  Y+ +E+ LDHFE DQ       G  +  NP+LAGA +GLLYK +A PR A +A V G    G  Y +
Sbjct:   33 NVDL---SKMYGGAAQGKEPEYLDYNIKGRGFWERMPYNAGALYITGILGGGAAGVREGFAKAPNRRSRVLLNSIMNHAGKKGSFYGNTFAVLATYYTCAETLLDHFEVDQMGPVQQAGLGEIINPLLAGASTGLLYKSSAGPRLALMASVAGLGAVGVAYAV 192          
BLAST of NO10G02180 vs. NCBI_GenBank
Match: XP_002180317.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC48508.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 131.3 bits (329), Expect = 3.200e-27
Identity = 73/175 (41.71%), Postives = 96/175 (54.86%), Query Frame = 0
Query:   18 DSDLPRIDLFGTGNVDLRTVAPLYGVTSEEEPDYLDYDIKGRGTVERMFLYSGSSYLTGILTGGVLGGRVGWKTAPSPRFWLRLNSVMNGAGKLGSKWGNNAGVFALMYSLSESALDHFETDQFLGGHQAT-------NPVLAGAISGLLYKCTAAPRTAALALVLGGAGAGAFY 186
            D+  P  D F T  + L TVAP  GV  +  PDYLDYD KGRG +  MF  +G SY+ G   GGV G R G    PS RF ++LNSV+N +G+ GS+ GN  GVFA++YSL E   DH++ ++ LG    +       +P     ++G  Y   + PR AALA  LG       Y
Sbjct:   11 DTGAPLPD-FRTSGIQLHTVAPALGVIGKNTPDYLDYDTKGRGIIVTMFANAGMSYVLGTTFGGVYGVRQGLVATPSNRFRVKLNSVLNHSGRYGSRAGNTLGVFAVLYSLYEGLADHYDLEETLGVRDISPAAASFVSPAFGAVMAGATYYGPSGPRVAALAGALGFGSVAVTY 184          
BLAST of NO10G02180 vs. NCBI_GenBank
Match: GAY00899.1 (prohibitin-2 [Pythium insidiosum])

HSP 1 Score: 130.6 bits (327), Expect = 5.500e-27
Identity = 71/179 (39.66%), Postives = 108/179 (60.34%), Query Frame = 0
Query:   20 DLPRIDLFGTGNVDLRTVAPLYGVTSEEE-PDYLDYDIKGRGTVERMFLYSGSSYLTGILTGGVLGGRVGWKTAPSPRFWLRLNSVMNGAGKLGSKWGNNAGVFALMYSLSESALDHFETDQFLGGHQATNPVLAGAISGLLYKCTAAPRTAALALVLGGAGAGAFYVMRGQMERFYYR 198
            D P +    +G++DL  +AP++GV  +++  DYLDYD  GR  +E++    G++Y TGI+ GG+ G   G+  +PSP+F +R+NS++NGAG  GSK GN  G  A++Y   E   D  E +++    Q T P+LA A +G+ YK TA P+   LA   G  GAG   V++  ++ FY R
Sbjct:  359 DFPVLPTIPSGSIDLGAIAPVFGVAYDDDVADYLDYDKAGRPFLEQVNASCGTAYFTGIIGGGLFGAAQGFARSPSPKFKIRMNSLLNGAGLRGSKAGNALGCLAMIYKGFEYVADTVELERYAKFDQVT-PILASAATGVFYKSTAGPKAMVLA---GALGAGLMTVVQFGVKPFYPR 533          
BLAST of NO10G02180 vs. NCBI_GenBank
Match: CCA22599.1 (Mitochondrial Protein Translocase (MPT) Family puta [Albugo laibachii Nc14])

HSP 1 Score: 129.8 bits (325), Expect = 9.300e-27
Identity = 74/171 (43.27%), Postives = 103/171 (60.23%), Query Frame = 0
Query:   20 DLPRIDLFGTGNVDLRTVAPLYGVTSEEE--PDYLDYDIKGRGTVERMFLYSGSSYLTGILTGGVLGGRVGWKTAPSPRFWLRLNSVMNGAGKLGSKWGNNAGVFALMYSLSESALDHFETDQFLGGHQATNPVLAGAISGLLYKCTAAPRTAALALVLGGAGAGAFYVMR 189
            + P +    +G++D+ TVAP++GV   ++   DYL+YD  GR  +E +    GS+Y TGI+ GG+ G   G + APSP+F +RLNSVMN A   GSK GN  G  AL+Y   E   D  E ++F+   Q T P+LA A +GL YK TA P+   LA   GG GAGA  +++
Sbjct:   49 EFPLLPSIPSGSIDIGTVAPVFGVAGFDDNGADYLEYDKAGRPFMELVQTSCGSAYFTGIIGGGLYGATQGLRKAPSPKFKIRLNSVMNQAALRGSKAGNALGCLALIYKGFEQLADTIELERFVKYDQVT-PILASAATGLFYKSTAGPKAMVLA---GGMGAGAMTLLQ 215          
BLAST of NO10G02180 vs. NCBI_GenBank
Match: EJK64388.1 (hypothetical protein THAOC_14881 [Thalassiosira oceanica])

HSP 1 Score: 127.5 bits (319), Expect = 4.600e-26
Identity = 76/181 (41.99%), Postives = 102/181 (56.35%), Query Frame = 0
Query:   18 DSDLPRIDLFGTGNVDLRTVAPLYGVTSE------EEPDYLDYDIKGRGTVERMFLYSGSSYLTGILTGGVLGGRVGWKTAPSPRFWLRLNSVMNGAGKLGSKWGNNAGVFALMYSLSESALDHFETDQFLGGHQATNPVLAGAISGLLYKCTAAPRTAALALVLGGAGAG---AFYVMRG 190
            DS  P  D F   N+ L+TVAP +G++S        +PDYL+YD + RG    MF  SG SY+ G+  GG+ G R G    PS RF ++LNS++N  G+ GS  GN  G  +++YSL E   D ++ DQ+ G  Q   P+ AGA++G  Y   A PR AALA  +G A  G   A Y M G
Sbjct:   24 DSGAPLPD-FNASNIKLQTVAPAFGISSSSLPAGVSQPDYLEYD-QSRGVTTIMFTNSGISYMLGVTLGGLYGLREGLAKTPSSRFKVKLNSILNHCGRNGSVVGNMLGATSILYSLYEGLADTYDLDQYTGPIQPPAPLFAGAMTGATYYMRAGPRVAALAGSIGLASVGGTFAIYSMLG 202          
BLAST of NO10G02180 vs. NCBI_GenBank
Match: XP_009531028.1 (hypothetical protein PHYSODRAFT_354995 [Phytophthora sojae] >EGZ13599.1 hypothetical protein PHYSODRAFT_354995 [Phytophthora sojae])

HSP 1 Score: 126.3 bits (316), Expect = 1.000e-25
Identity = 69/179 (38.55%), Postives = 105/179 (58.66%), Query Frame = 0
Query:   20 DLPRIDLFGTGNVDLRTVAPLYGVTS-EEEPDYLDYDIKGRGTVERMFLYSGSSYLTGILTGGVLGGRVGWKTAPSPRFWLRLNSVMNGAGKLGSKWGNNAGVFALMYSLSESALDHFETDQFLGGHQATNPVLAGAISGLLYKCTAAPRTAALALVLGGAGAGAFYVMRGQMERFYYR 198
            + P +    +G++D+  +AP++GV S +++ DYLDYD  GR  +E+M    G++Y +GI+ GG  G   G+  +PS +F +R+NS+MNGA   GSK GN  G  A++Y   E   D  E +  +   Q T P+LA A +G+ YK TA P+   LA   G  GAG   V++  ++ FY R
Sbjct:   33 EFPVLPTIPSGSIDIGAIAPVFGVASYDDDADYLDYDKAGRPFMEQMSGSCGTAYFSGIIGGGAYGALTGFARSPSTKFKIRMNSLMNGAATRGSKAGNALGCLAMIYKAFEYVADSAEIENIVKFDQVT-PILASAATGVFYKSTAGPKAMVLA---GALGAGVMTVVQFGIKPFYPR 207          
BLAST of NO10G02180 vs. NCBI_GenBank
Match: XP_024577951.1 (mitochondrial protein translocase family [Plasmopara halstedii] >CEG41582.1 mitochondrial protein translocase family [Plasmopara halstedii])

HSP 1 Score: 125.6 bits (314), Expect = 1.800e-25
Identity = 70/177 (39.55%), Postives = 105/177 (59.32%), Query Frame = 0
Query:   22 PRIDLFGTGNVDLRTVAPLYGV-TSEEEPDYLDYDIKGRGTVERMFLYSGSSYLTGILTGGVLGGRVGWKTAPSPRFWLRLNSVMNGAGKLGSKWGNNAGVFALMYSLSESALDHFETDQFLGGHQATNPVLAGAISGLLYKCTAAPRTAALALVLGGAGAGAFYVMRGQMERFYYR 198
            P +    +G++D+  +AP++GV T +++ DYLDYD  GR  +E+M    G++Y +GI+ GG  G   G+  +PS +F +R+NS+MNGA   GSK GN  G  A++Y   E   D  E +  +   Q T P+LA A +G+ YK TA P+T  LA   G  GAG   V++  ++ FY R
Sbjct:   35 PVLPTIPSGSIDIGAIAPVFGVSTYDDDADYLDYDKAGRPFMEQMSGSCGTAYFSGIIGGGAYGAVRGFTRSPSTKFKIRMNSIMNGAATRGSKAGNALGCLAMIYKAFEYVADSAEIENIVKFDQVT-PILASAATGVFYKSTAGPKTMILA---GAIGAGLMTVVQFGIKPFYPR 207          
BLAST of NO10G02180 vs. NCBI_GenBank
Match: XP_002903138.1 (Mitochondrial Protein Translocase (MPT) Family [Phytophthora infestans T30-4] >EEY55562.1 Mitochondrial Protein Translocase (MPT) Family [Phytophthora infestans T30-4])

HSP 1 Score: 124.8 bits (312), Expect = 3.000e-25
Identity = 68/179 (37.99%), Postives = 106/179 (59.22%), Query Frame = 0
Query:   20 DLPRIDLFGTGNVDLRTVAPLYGVTS-EEEPDYLDYDIKGRGTVERMFLYSGSSYLTGILTGGVLGGRVGWKTAPSPRFWLRLNSVMNGAGKLGSKWGNNAGVFALMYSLSESALDHFETDQFLGGHQATNPVLAGAISGLLYKCTAAPRTAALALVLGGAGAGAFYVMRGQMERFYYR 198
            + P +    +G++D+ ++AP++GV + +++ DYLDYD  GR  +E+M    G++Y +GI+ GG  G   G+  +PS +F +R+NS+MNGA   GSK GN  G  A++Y   E   D  E +  +   Q T P+LA A +G+ YK TA P+   LA   G  GAG   V++  ++ FY R
Sbjct:   31 EFPVLPTIPSGSIDIGSIAPVFGVAAYDDDADYLDYDKTGRPFMEQMSGSCGTAYFSGIIGGGAYGALKGFSRSPSTKFKIRMNSLMNGAATRGSKAGNALGCLAMVYKAFEYVADSAEIENIVKFDQVT-PILASAATGVFYKSTAGPKAMVLA---GALGAGLMTVVQFGIKPFYPR 205          
BLAST of NO10G02180 vs. NCBI_GenBank
Match: GBG25151.1 (Mitochondrial import inner membrane translocase subunit Tim23 [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 124.8 bits (312), Expect = 3.000e-25
Identity = 68/169 (40.24%), Postives = 98/169 (57.99%), Query Frame = 0
Query:   30 GNVDLRTVAPLYGV-------TSEEEPDYLDYDIKGRGTVERMFLYSGSSYLTGILTGGVLGGRVGWKTAPSPRFWLRLNSVMNGAGKLGSKWGNNAGVFALMYSLSESALDHFETDQFLGGHQATNPVLAGAISGLLYKCTAAPRTAALALVLGGAGAGAFYVMRGQM 192
            G V+  T++P++G        T   +P+YL Y+ K     ERM   SG +YL GI  GG  G   G  TAPS +F +R+NS++N +G+ GS++GN  G  A+MYS  E+A +    + ++GG +  NPVLA  ++GLLYKCT  P+T ALA ++GG         R  M
Sbjct:  668 GAVNPSTLSPMFGAGAQGGVGTGAYKPEYLHYEPK--AWHERMCYNSGIAYLGGIGVGGAYGVVNGLMTAPSSKFKIRVNSILNKSGRYGSRFGNALGAVAMMYSCIEAATETMHIEDYVGGDEIVNPVLAATLTGLLYKCTQGPKTMALAGIIGGTAVAGLTTARSFM 834          
The following BLAST results are available for this feature:
BLAST of NO10G02180 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25356.12.100e-8788.89mitochondrial import inner membrane translocase su... [more]
CBJ48753.13.800e-2847.85Mitochondrial import inner membrane translocase su... [more]
XP_002180317.13.200e-2741.71predicted protein [Phaeodactylum tricornutum CCAP ... [more]
GAY00899.15.500e-2739.66prohibitin-2 [Pythium insidiosum][more]
CCA22599.19.300e-2743.27Mitochondrial Protein Translocase (MPT) Family put... [more]
EJK64388.14.600e-2641.99hypothetical protein THAOC_14881 [Thalassiosira oc... [more]
XP_009531028.11.000e-2538.55hypothetical protein PHYSODRAFT_354995 [Phytophtho... [more]
XP_024577951.11.800e-2539.55mitochondrial protein translocase family [Plasmopa... [more]
XP_002903138.13.000e-2537.99Mitochondrial Protein Translocase (MPT) Family [Ph... [more]
GBG25151.13.000e-2540.24Mitochondrial import inner membrane translocase su... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL052nonsL052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR015ngnoR015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001088NSK001088Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G02180.1NO10G02180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586074gene_3997Nannochloropsis oceanica (N. oceanica CCMP1779)gene
TIM23gene5067Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G02180.1NO10G02180.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G02180 ID=NO10G02180|Name=NO10G02180|organism=Nannochloropsis oceanica|type=gene|length=1061bp
CAAGCAAGGACCTCTGTTGGCTTGGTTCATTATCGCCCTCTGCCGGTATG
ACAGATTCTCCACAGCCTTCTCATCCTCGACATCATTTGTCCCACCTTTT
TGAGAGGTTTTGGGAGTGGGGAATCCTCCTTGGACGGTGAAAGCAAGCAA
CATTTGGGCAAGCCCATCATCGATATCCGCATCCGAGAAGCGTACTAGTA
GTTCTCCGTCGGACGTGATGATCCCCCAGGCAGCTTATTTCACGCCGCGA
CTAAATACAACCACAGAGAGAGTCCACCTAAGTAACGCATATGCATCCGC
TGCATCCGCACCCGCGCATCCGCATTATCGCGTTGCACTCTCTCCGCCCA
CCCTTCGACTGCTTCCAAAAAAACGCAGCTCACTCATGCTCCTGGGCTTC
CCCATCCCACTACTCATCACTACAGTGCCATGCCTGCCAACGACAGCTCG
TCCTCGTCCTCTTCCGGCTCCTCTTACAGCGACTCGGACCTGCCGCGCAT
CGACCTGTTTGGCACTGGAAATGTGGACCTGCGGACGGTGGCCCCGCTGT
ACGGCGTGACAAGCGAGGAGGAACCTGATTACCTGGACTACGACATCAAG
GGCCGGGGCACGGTCGAGCGCATGTTTCTGTACTCAGGCTCGTCTTATCT
CACGGGTATCCTCACCGGCGGCGTGTTGGGGGGACGTGTAGGGTGGAAGA
CGGCGCCGAGCCCAAGATTTTGGCTGCGTTTGAACAGTGTAATGAATGGG
GCGGGGAAATTGGGGTCGAAGTGGGGGAACAACGCAGGTGTGTTTGCTCT
GATGTATTCTCTGAGTGAGTCGGCGTTGGATCATTTTGAAACCGATCAAT
TTTTGGGGGGGCATCAAGCGACGAACCCTGTGTTGGCTGGTGCAATCAGT
GGGTTGTTGTATAAGTGCACGGCGGCGCCAAGGACGGCAGCGTTGGCTTT
GGTCCTTGGGGGGGCCGGGGCTGGTGCATTTTACGTCATGAGGGGACAGA
TGGAGCGGTTTTATTATCGGTAGACGGTAGGCTAAAGAAAAAAATATGTA
TACAAGCAAGG
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protein sequence of NO10G02180.1

>NO10G02180.1-protein ID=NO10G02180.1-protein|Name=NO10G02180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=198bp
MPANDSSSSSSSGSSYSDSDLPRIDLFGTGNVDLRTVAPLYGVTSEEEPD
YLDYDIKGRGTVERMFLYSGSSYLTGILTGGVLGGRVGWKTAPSPRFWLR
LNSVMNGAGKLGSKWGNNAGVFALMYSLSESALDHFETDQFLGGHQATNP
VLAGAISGLLYKCTAAPRTAALALVLGGAGAGAFYVMRGQMERFYYR*
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Synonyms
Publications