NO10G02180.1, NO10G02180.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G02180.1
Unique NameNO10G02180.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1061
Alignment locationchr10:598590..599650 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:598590..599650 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G02180.1 vs.
Match: EWM25356.1 (mitochondrial import inner membrane translocase subunit tim23 [Nannochloropsis gaditana])

HSP 1 Score: 333.2 bits (853), Expect = 5.600e-88
Identity = 164/190 (86.32%), Postives = 176/190 (92.63%), Query Frame = 0 
Query:    8 SSSSSGSSYSDSDLPRIDLFGTGNVDLRTVAPLYGVTSEEEPDYLDYDIKGRGTVERMFLYSGSSYLTGILTGGVLGGRVGWKTAPSPRFWLRLNSVMNGAGKLGSKWGNNAGVFALMYSLSESALDHFETDQFLGGHQATNPVLAGAISGLLYKCTAAPRTAALALVLGGAGAGAFYVMRGQMERFYYR 198
            +++SS  S SD +LP+IDLFG GNVDLRTVAPLYGV SEEEPDYLDYDIKGRGTVERMFLYSGSSYLTGILTGG+LGGR GWKTAPSPRFWLRLNSVMNGAGKLGSKWGNNAGVFALMYSLSES LDHFETD+ LGGHQA NPVL+GAISGLLYK TAAPRTAALA VLGG GAG FYV+RGQ++RF+YR
Sbjct:   70 NNTSSSYSASDDNLPKIDLFGGGNVDLRTVAPLYGVASEEEPDYLDYDIKGRGTVERMFLYSGSSYLTGILTGGILGGRRGWKTAPSPRFWLRLNSVMNGAGKLGSKWGNNAGVFALMYSLSESLLDHFETDKVLGGHQAVNPVLSGAISGLLYKSTAAPRTAALASVLGGFGAGMFYVIRGQLDRFFYR 259
The following BLAST results are available for this feature:
BLAST of NO10G02180.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25356.15.600e-8886.32mitochondrial import inner membrane translocase su... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G02180NO10G02180Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G02180.1NO10G02180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G02180.1.cds1NO10G02180.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G02180.1 ID=NO10G02180.1|Name=NO10G02180.1|organism=Nannochloropsis oceanica|type=mRNA|length=1061bp
CAAGCAAGGACCTCTGTTGGCTTGGTTCATTATCGCCCTCTGCCGGTATG
ACAGATTCTCCACAGCCTTCTCATCCTCGACATCATTTGTCCCACCTTTT
TGAGAGGTTTTGGGAGTGGGGAATCCTCCTTGGACGGTGAAAGCAAGCAA
CATTTGGGCAAGCCCATCATCGATATCCGCATCCGAGAAGCGTACTAGTA
GTTCTCCGTCGGACGTGATGATCCCCCAGGCAGCTTATTTCACGCCGCGA
CTAAATACAACCACAGAGAGAGTCCACCTAAGTAACGCATATGCATCCGC
TGCATCCGCACCCGCGCATCCGCATTATCGCGTTGCACTCTCTCCGCCCA
CCCTTCGACTGCTTCCAAAAAAACGCAGCTCACTCATGCTCCTGGGCTTC
CCCATCCCACTACTCATCACTACAGTGCCATGCCTGCCAACGACAGCTCG
TCCTCGTCCTCTTCCGGCTCCTCTTACAGCGACTCGGACCTGCCGCGCAT
CGACCTGTTTGGCACTGGAAATGTGGACCTGCGGACGGTGGCCCCGCTGT
ACGGCGTGACAAGCGAGGAGGAACCTGATTACCTGGACTACGACATCAAG
GGCCGGGGCACGGTCGAGCGCATGTTTCTGTACTCAGGCTCGTCTTATCT
CACGGGTATCCTCACCGGCGGCGTGTTGGGGGGACGTGTAGGGTGGAAGA
CGGCGCCGAGCCCAAGATTTTGGCTGCGTTTGAACAGTGTAATGAATGGG
GCGGGGAAATTGGGGTCGAAGTGGGGGAACAACGCAGGTGTGTTTGCTCT
GATGTATTCTCTGAGTGAGTCGGCGTTGGATCATTTTGAAACCGATCAAT
TTTTGGGGGGGCATCAAGCGACGAACCCTGTGTTGGCTGGTGCAATCAGT
GGGTTGTTGTATAAGTGCACGGCGGCGCCAAGGACGGCAGCGTTGGCTTT
GGTCCTTGGGGGGGCCGGGGCTGGTGCATTTTACGTCATGAGGGGACAGA
TGGAGCGGTTTTATTATCGGTAGACGGTAGGCTAAAGAAAAAAATATGTA
TACAAGCAAGG
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protein sequence of NO10G02180.1

>NO10G02180.1-protein ID=NO10G02180.1-protein|Name=NO10G02180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=198bp
MPANDSSSSSSSGSSYSDSDLPRIDLFGTGNVDLRTVAPLYGVTSEEEPD
YLDYDIKGRGTVERMFLYSGSSYLTGILTGGVLGGRVGWKTAPSPRFWLR
LNSVMNGAGKLGSKWGNNAGVFALMYSLSESALDHFETDQFLGGHQATNP
VLAGAISGLLYKCTAAPRTAALALVLGGAGAGAFYVMRGQMERFYYR*
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mRNA from alignment at chr10:598590..599650-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G02180.1 ID=NO10G02180.1|Name=NO10G02180.1|organism=Nannochloropsis oceanica|type=mRNA|length=1061bp|location=Sequence derived from alignment at chr10:598590..599650- (Nannochloropsis oceanica)
CAAGCAAGGACCTCTGTTGGCTTGGTTCATTATCGCCCTCTGCCGGTATG
ACAGATTCTCCACAGCCTTCTCATCCTCGACATCATTTGTCCCACCTTTT
TGAGAGGTTTTGGGAGTGGGGAATCCTCCTTGGACGGTGAAAGCAAGCAA
CATTTGGGCAAGCCCATCATCGATATCCGCATCCGAGAAGCGTACTAGTA
GTTCTCCGTCGGACGTGATGATCCCCCAGGCAGCTTATTTCACGCCGCGA
CTAAATACAACCACAGAGAGAGTCCACCTAAGTAACGCATATGCATCCGC
TGCATCCGCACCCGCGCATCCGCATTATCGCGTTGCACTCTCTCCGCCCA
CCCTTCGACTGCTTCCAAAAAAACGCAGCTCACTCATGCTCCTGGGCTTC
CCCATCCCACTACTCATCACTACAGTGCCATGCCTGCCAACGACAGCTCG
TCCTCGTCCTCTTCCGGCTCCTCTTACAGCGACTCGGACCTGCCGCGCAT
CGACCTGTTTGGCACTGGAAATGTGGACCTGCGGACGGTGGCCCCGCTGT
ACGGCGTGACAAGCGAGGAGGAACCTGATTACCTGGACTACGACATCAAG
GGCCGGGGCACGGTCGAGCGCATGTTTCTGTACTCAGGCTCGTCTTATCT
CACGGGTATCCTCACCGGCGGCGTGTTGGGGGGACGTGTAGGGTGGAAGA
CGGCGCCGAGCCCAAGATTTTGGCTGCGTTTGAACAGTGTAATGAATGGG
GCGGGGAAATTGGGGTCGAAGTGGGGGAACAACGCAGGTGTGTTTGCTCT
GATGTATTCTCTGAGTGAGTCGGCGTTGGATCATTTTGAAACCGATCAAT
TTTTGGGGGGGCATCAAGCGACGAACCCTGTGTTGGCTGGTGCAATCAGT
GGGTTGTTGTATAAGTGCACGGCGGCGCCAAGGACGGCAGCGTTGGCTTT
GGTCCTTGGGGGGGCCGGGGCTGGTGCATTTTACGTCATGAGGGGACAGA
TGGAGCGGTTTTATTATCGGTAGACGGTAGGCTAAAGAAAAAAATATGTA
TACAAGCAAGG
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Coding sequence (CDS) from alignment at chr10:598590..599650-

>NO10G02180.1 ID=NO10G02180.1|Name=NO10G02180.1|organism=Nannochloropsis oceanica|type=CDS|length=594bp|location=Sequence derived from alignment at chr10:598590..599650- (Nannochloropsis oceanica)
ATGCCTGCCAACGACAGCTCGTCCTCGTCCTCTTCCGGCTCCTCTTACAG
CGACTCGGACCTGCCGCGCATCGACCTGTTTGGCACTGGAAATGTGGACC
TGCGGACGGTGGCCCCGCTGTACGGCGTGACAAGCGAGGAGGAACCTGAT
TACCTGGACTACGACATCAAGGGCCGGGGCACGGTCGAGCGCATGTTTCT
GTACTCAGGCTCGTCTTATCTCACGGGTATCCTCACCGGCGGCGTGTTGG
GGGGACGTGTAGGGTGGAAGACGGCGCCGAGCCCAAGATTTTGGCTGCGT
TTGAACAGTGTAATGAATGGGGCGGGGAAATTGGGGTCGAAGTGGGGGAA
CAACGCAGGTGTGTTTGCTCTGATGTATTCTCTGAGTGAGTCGGCGTTGG
ATCATTTTGAAACCGATCAATTTTTGGGGGGGCATCAAGCGACGAACCCT
GTGTTGGCTGGTGCAATCAGTGGGTTGTTGTATAAGTGCACGGCGGCGCC
AAGGACGGCAGCGTTGGCTTTGGTCCTTGGGGGGGCCGGGGCTGGTGCAT
TTTACGTCATGAGGGGACAGATGGAGCGGTTTTATTATCGGTAG
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Synonyms
Publications