NO10G02150, NO10G02150 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO10G02150
Unique Name	NO10G02150
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2314
Alignment location	chr10:593055..595368 +

Link to JBrowse

Properties


Property Name	Value
Description	Ddb1-and cul4-associated factor

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr10	genome	chr10:593055..595368 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036322	WD40_repeat_dom_sf
IPR017986	WD40_repeat_dom
IPR007287	Sof1
IPR001680	WD40_repeat

Homology

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BLAST of NO10G02150 vs. NCBI_GenBank
Match: XP_009526218.1 (hypothetical protein PHYSODRAFT_314636 [Phytophthora sojae] >EGZ17160.1 hypothetical protein PHYSODRAFT_314636 [Phytophthora sojae])

HSP 1 Score: 431.0 bits (1107), Expect = 4.400e-117
Identity = 281/448 (62.72%), Postives = 342/448 (76.34%), Query Frame = 0

Query:    1 MKIKTLSRSEEAFTRECKGDVVKVFRNLEPALHPFDKAREYTRALTATKLDKMFAKPLVGALDGHTDGVYCSALSKRNLVQFLTGACDGEVRVWDMNVRKCVWRAYAHSGFVRGLSVAPDGGTFFSCG-DKTVKQWKLCVVGDTSEEPSAMNTWLHTESLTSIDHHWRDTRFATAADSRVLVWDHARSSPIQSFSWGCDAISCVRYNPAEHSLLASTGSDRAVTLFDTREGAAMRKAVLVMRSNALAWNPQEPLNFTVASEDHNLYTFDMRKLVQAKLIHKDHVGAVMDLAFSPTGQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQASKALGAKVSRAEKKLEYTEALKKRYQHMPEVRRIAKHRHVPKAIKKAQELVRVQQDSQRRKSQNRRKHAKPDSDEFKFVPERKQRVVAEM 448
            MK+KT+SR E+ FT+E + D +KVFRN +PALHPF++ REYTRAL A KL+++FAKP +GALDGH DGV   A + ++LV F++GA DGEVRVWD+  RKCVW  Y H GFVRGL+V PDG TF+SC  DKTVKQW L V  +  + P+A+ T+   E    IDHHW    FAT   S+V VWD +RS+P   F+WG D+I+ V +NPAE SLLASTGSDR +TL+D R  ++MRK V+ MRSNALAWNP EP+NFTVA+EDHNLYTFDMRK+ +A ++HKDHV AVMD+A+SPTG+EXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     L     R  +K+EY E+LK+RYQH+ E+ RI+KHRHVPKAIKKA E  R     +++K  NRR HAK  +     +  R++ VV EM
Sbjct: 1906 MKVKTISRVEKDFTQEVQSDKLKVFRNYDPALHPFERPREYTRALNAVKLERLFAKPFIGALDGHCDGVTALATNPKSLVAFVSGAADGEVRVWDLPRRKCVWNVYGHRGFVRGLAVTPDGNTFYSCSEDKTVKQWALRVKDEDDDVPTALATFTSKEPFLGIDHHWSQNMFATCG-SKVQVWDPSRSTPTHEFAWGADSINSVHFNPAEASLLASTGSDRNITLYDIRMASSMRKIVMEMRSNALAWNPMEPMNFTVANEDHNLYTFDMRKMNRAMMVHKDHVSAVMDVAYSPTGREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSKMAPRERRKMEYNESLKERYQHLREISRISKHRHVPKAIKKAAEAKREASAREQKKMANRRAHAKEGAVPHTNI--REKVVVREM 2350

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BLAST of NO10G02150 vs. NCBI_GenBank
Match: XP_002907956.1 (glycoside hydrolase, putative [Phytophthora infestans T30-4] >EEY61039.1 glycoside hydrolase, putative [Phytophthora infestans T30-4])

HSP 1 Score: 429.5 bits (1103), Expect = 1.300e-116
Identity = 282/448 (62.95%), Postives = 341/448 (76.12%), Query Frame = 0

Query:    1 MKIKTLSRSEEAFTRECKGDVVKVFRNLEPALHPFDKAREYTRALTATKLDKMFAKPLVGALDGHTDGVYCSALSKRNLVQFLTGACDGEVRVWDMNVRKCVWRAYAHSGFVRGLSVAPDGGTFFSCG-DKTVKQWKLCVVGDTSEEPSAMNTWLHTESLTSIDHHWRDTRFATAADSRVLVWDHARSSPIQSFSWGCDAISCVRYNPAEHSLLASTGSDRAVTLFDTREGAAMRKAVLVMRSNALAWNPQEPLNFTVASEDHNLYTFDMRKLVQAKLIHKDHVGAVMDLAFSPTGQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQASKALGAKVSRAEKKLEYTEALKKRYQHMPEVRRIAKHRHVPKAIKKAQELVRVQQDSQRRKSQNRRKHAKPDSDEFKFVPERKQRVVAEM 448
            MK+KT+SR E+ FT+E + D +KVFRN +PALHPF++ REYTRAL A KL+++FAKP VGALDGH DGV   A + ++LV F++GA DGEVRVWD+  RKCVW  Y H GFVRGL+V PDG TF+SC  DKTVKQW L V  +  + P+A+ T+   E    IDHHW    FAT   S+V VWD +RS+P   F+WG D+I+ V +NPAE SLLASTGSDR +TL+D R  ++MRK V+ MRSNALAWNP EP+NFTVA+EDHNLYTFDMRK+ +A ++HKDHV AVMD+A+SPTG+EXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX           R  +K+EY E+LK+RYQH+ E+ RI+KHRHVPKAIKKA E  R     +++K  NRR HAK  +     +  RK+ VV EM
Sbjct: 1862 MKVKTISRVEKDFTQEVQSDKLKVFRNYDPALHPFERPREYTRALNAVKLERLFAKPFVGALDGHCDGVTALATNPKSLVAFVSGAADGEVRVWDLPRRKCVWNVYGHRGFVRGLAVTPDGNTFYSCSEDKTVKQWALRVKEEDEDVPTALATFTSKEPFLGIDHHWSQNMFATCG-SKVQVWDPSRSTPTHEFAWGADSINSVHFNPAEASLLASTGSDRNITLYDIRVASSMRKIVMEMRSNALAWNPMEPMNFTVANEDHNLYTFDMRKMDRAMMVHKDHVSAVMDVAYSPTGREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKVNPRERRKMEYNESLKERYQHLREISRISKHRHVPKAIKKAAEAKREASAREQKKMANRRAHAKEGAVPHSNI--RKKVVVKEM 2306

[Close]

BLAST of NO10G02150 vs. NCBI_GenBank
Match: ETI45253.1 (hypothetical protein F443_10120 [Phytophthora parasitica P1569] >ETK85214.1 hypothetical protein L915_09908 [Phytophthora parasitica] >ETL38629.1 hypothetical protein L916_09818 [Phytophthora parasitica] >ETL91761.1 hypothetical protein L917_09736 [Phytophthora parasitica] >ETM45026.1 hypothetical protein L914_09789 [Phytophthora parasitica] >ETO73878.1 hypothetical protein F444_10217 [Phytophthora parasitica P1976] >ETP15071.1 hypothetical protein F441_10060 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 426.8 bits (1096), Expect = 8.400e-116
Identity = 280/448 (62.50%), Postives = 339/448 (75.67%), Query Frame = 0

Query:    1 MKIKTLSRSEEAFTRECKGDVVKVFRNLEPALHPFDKAREYTRALTATKLDKMFAKPLVGALDGHTDGVYCSALSKRNLVQFLTGACDGEVRVWDMNVRKCVWRAYAHSGFVRGLSVAPDGGTFFSCG-DKTVKQWKLCVVGDTSEEPSAMNTWLHTESLTSIDHHWRDTRFATAADSRVLVWDHARSSPIQSFSWGCDAISCVRYNPAEHSLLASTGSDRAVTLFDTREGAAMRKAVLVMRSNALAWNPQEPLNFTVASEDHNLYTFDMRKLVQAKLIHKDHVGAVMDLAFSPTGQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQASKALGAKVSRAEKKLEYTEALKKRYQHMPEVRRIAKHRHVPKAIKKAQELVRVQQDSQRRKSQNRRKHAKPDSDEFKFVPERKQRVVAEM 448
            MK+KT+SR E+ FT+E + D +KVFRN +PALHPF++ REYTRAL A KL+++FAKP VGALDGH DGV   A + ++LV F++GA DGEVRVWD+  RKCVW  Y H GFVRGL+V PDG TF+SC  DKTVKQW L V  +  + P+A+ T+   E    IDHHW    FAT   S+V VWD +RS+P   F+WG D+I+ V +NPAE SLLASTGSDR +TL+D R  ++MRK V+ MRSNALAWNP EP+NFTVA+EDHNLYTFDMRK+ +A  +HKDHV AVMD+A+SPTG+E XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX           R  +K+EY E+LK+RYQH+ E+ RI+KHRHVPKAIKKA E  R     +++K  NRR HAK  +     +  R++ VV EM
Sbjct:    1 MKVKTISRVEKDFTQEVQSDKLKVFRNYDPALHPFERPREYTRALNAAKLERLFAKPFVGALDGHCDGVTALATNPKSLVAFVSGAADGEVRVWDLPRRKCVWNVYGHRGFVRGLAVTPDGNTFYSCSEDKTVKQWALRVKDEDEDVPTALATFTSKEPFLGIDHHWSQNMFATCG-SKVQVWDPSRSTPTHEFAWGADSINSVHFNPAEASLLASTGSDRNITLYDIRVASSMRKIVMEMRSNALAWNPMEPMNFTVANEDHNLYTFDMRKMNRAMTVHKDHVSAVMDVAYSPTGREFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKVNPRERRKMEYNESLKERYQHLREISRISKHRHVPKAIKKAAEAKREANAREQKKMANRRAHAKDGAVPHTNI--RQKVVVKEM 445

[Close]

BLAST of NO10G02150 vs. NCBI_GenBank
Match: ETP43133.1 (hypothetical protein F442_10028 [Phytophthora parasitica P10297])

HSP 1 Score: 426.8 bits (1096), Expect = 8.400e-116
Identity = 280/448 (62.50%), Postives = 339/448 (75.67%), Query Frame = 0

Query:    1 MKIKTLSRSEEAFTRECKGDVVKVFRNLEPALHPFDKAREYTRALTATKLDKMFAKPLVGALDGHTDGVYCSALSKRNLVQFLTGACDGEVRVWDMNVRKCVWRAYAHSGFVRGLSVAPDGGTFFSCG-DKTVKQWKLCVVGDTSEEPSAMNTWLHTESLTSIDHHWRDTRFATAADSRVLVWDHARSSPIQSFSWGCDAISCVRYNPAEHSLLASTGSDRAVTLFDTREGAAMRKAVLVMRSNALAWNPQEPLNFTVASEDHNLYTFDMRKLVQAKLIHKDHVGAVMDLAFSPTGQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQASKALGAKVSRAEKKLEYTEALKKRYQHMPEVRRIAKHRHVPKAIKKAQELVRVQQDSQRRKSQNRRKHAKPDSDEFKFVPERKQRVVAEM 448
            MK+KT+SR E+ FT+E + D +KVFRN +PALHPF++ REYTRAL A KL+++FAKP VGALDGH DGV   A + ++LV F++GA DGEVRVWD+  RKCVW  Y H GFVRGL+V PDG TF+SC  DKTVKQW L V  +  + P+A+ T+   E    IDHHW    FAT   S+V VWD +RS+P   F+WG D+I+ V +NPAE SLLASTGSDR +TL+D R  ++MRK V+ MRSNALAWNP EP+NFTVA+EDHNLYTFDMRK+ +A  +HKDHV AVMD+A+SPTG+E XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX           R  +K+EY E+LK+RYQH+ E+ RI+KHRHVPKAIKKA E  R     +++K  NRR HAK  +     +  R++ VV EM
Sbjct:    1 MKVKTISRVEKDFTQEVQSDKLKVFRNYDPALHPFERPREYTRALNAAKLERLFAKPFVGALDGHCDGVTALATNPKSLVAFVSGAADGEVRVWDLPRRKCVWNVYGHRGFVRGLTVTPDGNTFYSCSEDKTVKQWALRVKDEDEDVPTALATFTSKEPFLGIDHHWSQNMFATCG-SKVQVWDPSRSTPTHEFAWGADSINSVHFNPAEASLLASTGSDRNITLYDIRVASSMRKIVMEMRSNALAWNPMEPMNFTVANEDHNLYTFDMRKMNRAMTVHKDHVSAVMDVAYSPTGREFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKVNPRERRKMEYNESLKERYQHLREISRISKHRHVPKAIKKAAEAKREANAREQKKMANRRAHAKDGAVPHTNI--RQKVVVKEM 445

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BLAST of NO10G02150 vs. NCBI_GenBank
Match: XP_008893212.1 (hypothetical protein PPTG_01596 [Phytophthora parasitica INRA-310] >ETN21413.1 hypothetical protein PPTG_01596 [Phytophthora parasitica INRA-310])

HSP 1 Score: 423.7 bits (1088), Expect = 7.100e-115
Identity = 280/448 (62.50%), Postives = 336/448 (75.00%), Query Frame = 0

Query:    1 MKIKTLSRSEEAFTRECKGDVVKVFRNLEPALHPFDKAREYTRALTATKLDKMFAKPLVGALDGHTDGVYCSALSKRNLVQFLTGACDGEVRVWDMNVRKCVWRAYAHSGFVRGLSVAPDGGTFFSCG-DKTVKQWKLCVVGDTSEEPSAMNTWLHTESLTSIDHHWRDTRFATAADSRVLVWDHARSSPIQSFSWGCDAISCVRYNPAEHSLLASTGSDRAVTLFDTREGAAMRKAVLVMRSNALAWNPQEPLNFTVASEDHNLYTFDMRKLVQAKLIHKDHVGAVMDLAFSPTGQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQASKALGAKVSRAEKKLEYTEALKKRYQHMPEVRRIAKHRHVPKAIKKAQELVRVQQDSQRRKSQNRRKHAKPDSDEFKFVPERKQRVVAEM 448
            MK+KT+SR E+ FT+E + D +KVFRN +PALHPF++ REYTRAL A KL+++FAKP VGALDGH DGV   A + ++LV F++GA DGEVRVWD+  RKCVW  Y H GFVRGL+V PDG TF+SC  DKTVKQW L V  +  + P+A+ T+   E    IDHHW    FAT   S+V VWD +RS+P   F+WG D+I+ V +NPAE SLLASTGSDR +TL+D R  ++MRK V+ MRSNALAWNP EP+NFTVA+EDHNLYTFDMRK+ +A  +HKDHV AVMD+A+SPTG+E XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX           R  +K+EY E+LK+RYQH+ E+ RI+KHRHVPKAIKKA E  R        K  NRR HAK  +     +  R++ VV EM
Sbjct:    1 MKVKTISRVEKDFTQEVQSDKLKVFRNYDPALHPFERPREYTRALNAAKLERLFAKPFVGALDGHCDGVTALATNPKSLVAFVSGAADGEVRVWDLPRRKCVWNVYGHRGFVRGLAVTPDGNTFYSCSEDKTVKQWALRVKDEDEDVPTALATFTSKEPFLGIDHHWSQNMFATCG-SKVQVWDPSRSTPTHEFAWGADSINSVHFNPAEASLLASTGSDRNITLYDIRVASSMRKIVMEMRSNALAWNPMEPMNFTVANEDHNLYTFDMRKMNRAMTVHKDHVSAVMDVAYSPTGREFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKVNPRERRKMEYNESLKERYQHLREISRISKHRHVPKAIKKAAEAKREANARXXXKMANRRAHAKDGAVPHTNI--RQKVVVKEM 445

[Close]

BLAST of NO10G02150 vs. NCBI_GenBank
Match: KUF78245.1 (DDB1- and CUL4-associated factor 13 [Phytophthora nicotianae] >KUF81548.1 DDB1- and CUL4-associated factor 13 [Phytophthora nicotianae])

HSP 1 Score: 415.6 bits (1067), Expect = 1.900e-112
Identity = 281/466 (60.30%), Postives = 338/466 (72.53%), Query Frame = 0

Query:    1 MKIKTLSRSEEAFTRECKGDVVKVFRNLEPALHPFDKAREYTRALTATKLDKMFAKPLVGALDGHTDGVYCSALSKRNLVQFLTGACDGEVRVWDMNVRKCVWRAYAHSGFVRGLSVAPDGGTFFSCG-DKTVKQWKLCVVGDTSEEPSAMNTWLHTES------------------LTSIDHHWRDTRFATAADSRVLVWDHARSSPIQSFSWGCDAISCVRYNPAEHSLLASTGSDRAVTLFDTREGAAMRKAVLVMRSNALAWNPQEPLNFTVASEDHNLYTFDMRKLVQAKLIHKDHVGAVMDLAFSPTGQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQASKALGAKVSRAEKKLEYTEALKKRYQHMPEVRRIAKHRHVPKAIKKAQELVRVQQDSQRRKSQNRRKHAKPDSDEFKFVPERKQRVVAEM 448
            MK+KT+SR E+ FT+E + D +KVFRN +PALHPF++ REYTRAL A KL+++FAKP VGALDGH DGV   A + ++LV F++GA DGEVRVWD+  RKCVW  Y H GFVRGL+V PDG TF+SC  DKTVKQW L V  +  + P+A+ T+   E                   +T IDHHW    FAT   S+V VWD +RS+P   F+WG D+I+ V +NPAE SLLASTGSDR +TL+D R  ++MRK V+ MRSNALAWNP EP+NFTVA+EDHNLYTFDMRK+ +A  +HKDHV AVMD+A+SPTG+E XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX           R  +K+EY E+LK+RYQH+ E+ RI+KHRHVPKAIKKA E  R        K  NRR HAK  +     +  R++ VV EM
Sbjct:  334 MKVKTISRVEKDFTQEVQSDKLKVFRNYDPALHPFERPREYTRALNAAKLERLFAKPFVGALDGHCDGVTALATNPKSLVAFVSGAADGEVRVWDLPRRKCVWNVYGHRGFVRGLAVTPDGNTFYSCSEDKTVKQWALRVKDEDEDVPTALATFTSKEPFLYVPCRARDSNGSSIDIMTGIDHHWSQNMFATCG-SKVQVWDPSRSTPTHEFAWGADSINSVHFNPAEASLLASTGSDRNITLYDIRVASSMRKIVMEMRSNALAWNPMEPMNFTVANEDHNLYTFDMRKMNRAMTVHKDHVSAVMDVAYSPTGREFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKVNPRERRKMEYNESLKERYQHLREISRISKHRHVPKAIKKAAEAKREANARXXXKMANRRAHAKDGAVPHTNI--RQKVVVKEM 796

[Close]

BLAST of NO10G02150 vs. NCBI_GenBank
Match: XP_024577959.1 (glycoside hydrolase [Plasmopara halstedii] >CEG41590.1 glycoside hydrolase [Plasmopara halstedii])

HSP 1 Score: 414.8 bits (1065), Expect = 3.300e-112
Identity = 269/428 (62.85%), Postives = 330/428 (77.10%), Query Frame = 0

Query:    1 MKIKTLSRSEEAFTRECKGDVVKVFRNLEPALHPFDKAREYTRALTATKLDKMFAKPLVGALDGHTDGVYCSALSKRNLVQFLTGACDGEVRVWDMNVRKCVWRAYAHSGFVRGLSVAPDGGTFFSCG-DKTVKQWKLCVVGDTSEEPSAMNTWLHTESLTSIDHHWRDTRFATAADSRVLVWDHARSSPIQSFSWGCDAISCVRYNPAEHSLLASTGSDRAVTLFDTREGAAMRKAVLVMRSNALAWNPQEPLNFTVASEDHNLYTFDMRKLVQAKLIHKDHVGAVMDLAFSPTGQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQASKALGAKVSRAEKKLEYTEALKKRYQHMPEVRRIAKHRHVPKAIKKAQELVRVQQDSQRRKSQNRRKHAK 428
            MK+KT+SR E+ FT+E + D +KVFRN +PALHPF++ REY RAL A KL++MFAKP VGALDGH DGV   A + ++LV F++GA DGEVRVWD+  RKCVW  Y H GFVRGL+VA DG +F+SC  DKTVKQW L +  +    P+ + T+   E    IDHHW +  FAT   S+V VWD +RS+P   F+WG D+I+ V +NPAE SLLASTGSDR +TL+D R  ++MRK V+ MRSNALAWNP EP+NFTVA+EDHNLYTFDMR++ +A  +HKDHV AVMD+A+SPTG+EXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     L     +  +K+EY E+LK+RYQH+ E+ RI+KHRHVP+AIKKA +  R     +++K  +RR HAK
Sbjct:    1 MKVKTISRVEKEFTQEVQSDKLKVFRNYDPALHPFERPREYIRALNAVKLERMFAKPFVGALDGHCDGVTALATNPKSLVAFVSGAADGEVRVWDLPRRKCVWNVYGHRGFVRGLAVAVDGNSFYSCSEDKTVKQWALRIKEEDEGVPTPLTTFTSKEPFLGIDHHWSENIFATCG-SKVQVWDPSRSTPTHEFAWGADSITSVHFNPAEASLLASTGSDRNITLYDIRLASSMRKIVMEMRSNALAWNPMEPMNFTVANEDHNLYTFDMRQMTRAMKVHKDHVSAVMDVAYSPTGREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAKIAPQERRKMEYNESLKERYQHVRELNRISKHRHVPRAIKKATQAKRESSTREQKKMASRRAHAK 427

[Close]

BLAST of NO10G02150 vs. NCBI_GenBank
Match: XP_009835899.1 (hypothetical protein, variant 1 [Aphanomyces astaci] >ETV74812.1 hypothetical protein, variant 1 [Aphanomyces astaci])

HSP 1 Score: 398.3 bits (1022), Expect = 3.200e-107
Identity = 184/298 (61.74%), Postives = 231/298 (77.52%), Query Frame = 0

Query:    1 MKIKTLSRSEEAFTRECKGDVVKVFRNLEPALHPFDKAREYTRALTATKLDKMFAKPLVGALDGHTDGVYCSALSKRNLVQFLTGACDGEVRVWDMNVRKCVWRAYAHSGFVRGLSVAPDGGTFFSCG-DKTVKQWKLCVVGDTSEEPSAMNTWLHTESLTSIDHHWRDTRFATAADSRVLVWDHARSSPIQSFSWGCDAISCVRYNPAEHSLLASTGSDRAVTLFDTREGAAMRKAVLVMRSNALAWNPQEPLNFTVASEDHNLYTFDMRKLVQAKLIHKDHVGAVMDLAFSPTGQE 298
            MK+KT+SR E+ FT+E   D  K+ RN +P LHPF++ REYTRAL A KLDK+FAKP VGALDGH D V C   S ++LVQF++GACDGE+R+WD+  RKCVW  Y H+GFVRGL+VAPDG +FFSC  DKT+KQW++ +  +  + P A+ T+   ES   IDHHW ++ FAT + S V VWDH RS PI ++SWG D+I+ V++NPAE SLLASTGSDRAV L+DTR   +MRK V+ MR+NALAWNP EP +FTVA+EDHNLYTFDMR L +A +IHKDHV AVMD+A+SPTG+E
Sbjct:    1 MKVKTISRVEQTFTQELATDRTKIHRNFDPKLHPFERPREYTRALNAVKLDKLFAKPFVGALDGHCDSVSCFGTSNKSLVQFVSGACDGEIRLWDLPRRKCVWSVYGHAGFVRGLTVAPDGNSFFSCSEDKTIKQWRMAIANE-DDAPEAIQTFHGKESFMGIDHHWTNSTFATCS-SVVQVWDHNRSDPIHNYSWGADSITSVKFNPAEPSLLASTGSDRAVALYDTRLAQSMRKIVMDMRNNALAWNPMEPYHFTVANEDHNLYTFDMRNLDRALMIHKDHVSAVMDIAYSPTGKE 296

[Close]

BLAST of NO10G02150 vs. NCBI_GenBank
Match: XP_009835900.1 (hypothetical protein, variant 2 [Aphanomyces astaci] >XP_009835901.1 hypothetical protein, variant 3 [Aphanomyces astaci] >ETV74813.1 hypothetical protein, variant 2 [Aphanomyces astaci] >ETV74814.1 hypothetical protein, variant 3 [Aphanomyces astaci])

HSP 1 Score: 398.3 bits (1022), Expect = 3.200e-107
Identity = 184/298 (61.74%), Postives = 231/298 (77.52%), Query Frame = 0

Query:    1 MKIKTLSRSEEAFTRECKGDVVKVFRNLEPALHPFDKAREYTRALTATKLDKMFAKPLVGALDGHTDGVYCSALSKRNLVQFLTGACDGEVRVWDMNVRKCVWRAYAHSGFVRGLSVAPDGGTFFSCG-DKTVKQWKLCVVGDTSEEPSAMNTWLHTESLTSIDHHWRDTRFATAADSRVLVWDHARSSPIQSFSWGCDAISCVRYNPAEHSLLASTGSDRAVTLFDTREGAAMRKAVLVMRSNALAWNPQEPLNFTVASEDHNLYTFDMRKLVQAKLIHKDHVGAVMDLAFSPTGQE 298
            MK+KT+SR E+ FT+E   D  K+ RN +P LHPF++ REYTRAL A KLDK+FAKP VGALDGH D V C   S ++LVQF++GACDGE+R+WD+  RKCVW  Y H+GFVRGL+VAPDG +FFSC  DKT+KQW++ +  +  + P A+ T+   ES   IDHHW ++ FAT + S V VWDH RS PI ++SWG D+I+ V++NPAE SLLASTGSDRAV L+DTR   +MRK V+ MR+NALAWNP EP +FTVA+EDHNLYTFDMR L +A +IHKDHV AVMD+A+SPTG+E
Sbjct:    1 MKVKTISRVEQTFTQELATDRTKIHRNFDPKLHPFERPREYTRALNAVKLDKLFAKPFVGALDGHCDSVSCFGTSNKSLVQFVSGACDGEIRLWDLPRRKCVWSVYGHAGFVRGLTVAPDGNSFFSCSEDKTIKQWRMAIANE-DDAPEAIQTFHGKESFMGIDHHWTNSTFATCS-SVVQVWDHNRSDPIHNYSWGADSITSVKFNPAEPSLLASTGSDRAVALYDTRLAQSMRKIVMDMRNNALAWNPMEPYHFTVANEDHNLYTFDMRNLDRALMIHKDHVSAVMDIAYSPTGKE 296

[Close]

BLAST of NO10G02150 vs. NCBI_GenBank
Match: POM60982.1 (Glycoside hydrolase, partial [Phytophthora palmivora var. palmivora])

HSP 1 Score: 392.9 bits (1008), Expect = 1.300e-105
Identity = 182/298 (61.07%), Postives = 229/298 (76.85%), Query Frame = 0

Query:    1 MKIKTLSRSEEAFTRECKGDVVKVFRNLEPALHPFDKAREYTRALTATKLDKMFAKPLVGALDGHTDGVYCSALSKRNLVQFLTGACDGEVRVWDMNVRKCVWRAYAHSGFVRGLSVAPDGGTFFSCG-DKTVKQWKLCVVGDTSEEPSAMNTWLHTESLTSIDHHWRDTRFATAADSRVLVWDHARSSPIQSFSWGCDAISCVRYNPAEHSLLASTGSDRAVTLFDTREGAAMRKAVLVMRSNALAWNPQEPLNFTVASEDHNLYTFDMRKLVQAKLIHKDHVGAVMDLAFSPTGQE 298
            MK+KT+SR E+ +T+E + D +KVFRN +PALHPF++ REYTRAL A KL+++FAKP VGALDGH DGV   A + ++LV F++GA DGEVRVWD+  RKCVW  Y H GFVRGL+V PDG TF+SC  DKTVKQW L V  +  + P+A+ T+   E    IDHHW    FAT   S+V VWD +RS+P   F+WG D+I+ V +NPAE SLLASTGSDR +TL+D R  ++MRK V+ MRSNALAWNP EP+NFTVA+EDHNLYTFDMRK+ +A ++HKDHV AVMD+A+SPTG+E
Sbjct:    1 MKVKTISRVEKDYTQEVQSDKLKVFRNYDPALHPFERPREYTRALNAAKLERLFAKPFVGALDGHCDGVTALATNPKSLVAFVSGAADGEVRVWDLPRRKCVWNVYGHRGFVRGLAVTPDGNTFYSCSEDKTVKQWALRVKDEDEDVPTALATFTSKEPFLGIDHHWSQNMFATCG-SKVQVWDPSRSTPTHEFAWGADSINSVHFNPAEASLLASTGSDRNITLYDIRVASSMRKIVMEMRSNALAWNPMEPMNFTVANEDHNLYTFDMRKMNRAMMVHKDHVSAVMDVAYSPTGRE 297

The following BLAST results are available for this feature:

BLAST of NO10G02150 vs. NCBI_GenBank

BLAST of NO10G02150 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
XP_009526218.1	4.400e-117	62.72	hypothetical protein PHYSODRAFT_314636 [Phytophtho...	[more]
XP_002907956.1	1.300e-116	62.95	glycoside hydrolase, putative [Phytophthora infest...	[more]
ETI45253.1	8.400e-116	62.50	hypothetical protein F443_10120 [Phytophthora para...	[more]
ETP43133.1	8.400e-116	62.50	hypothetical protein F442_10028 [Phytophthora para...	[more]
XP_008893212.1	7.100e-115	62.50	hypothetical protein PPTG_01596 [Phytophthora para...	[more]
KUF78245.1	1.900e-112	60.30	DDB1- and CUL4-associated factor 13 [Phytophthora ...	[more]
XP_024577959.1	3.300e-112	62.85	glycoside hydrolase [Plasmopara halstedii] >CEG415...	[more]
XP_009835899.1	3.200e-107	61.74	hypothetical protein, variant 1 [Aphanomyces astac...	[more]
XP_009835900.1	3.200e-107	61.74	hypothetical protein, variant 2 [Aphanomyces astac...	[more]
POM60982.1	1.300e-105	61.07	Glycoside hydrolase, partial [Phytophthora palmivo...	[more]

Pages

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL052	nonsL052	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR004	ncniR004	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR015	ngnoR015	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK001086	NSK001086	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO10G02150.1	NO10G02150.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide
NO10G02150.2	NO10G02150.2-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|638563	gene_3998	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100005g36	gene5069	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO10G02150.1	NO10G02150.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA
NO10G02150.2	NO10G02150.2	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence
protein sequence

gene sequence

>NO10G02150 ID=NO10G02150|Name=NO10G02150|organism=Nannochloropsis oceanica|type=gene|length=2314bp
ATAATGACCAAAAAAACGTGTCTCGGCGACCATCGCCATCCTTCCCCAAT
TCCCGACATGAGAATATTGAAGCTTTCAATCACCATGGGCTTCATGTCCT
TTGTATCCAGGTCCGCGATGGCGTCGTCCAAGGTCCACAACTGCTCCTAC
ACGCTAATGTGTAATACAAGCAGGTTATTCACGCCCTTGCTAGCGCGTAA
AACGTGCTGTAATCGGAAGATTTGATGCCCGATGCGTGTCCAAAGCTCCC
GGTGAAGTTCAGACTCTGACGTCGCCGAGTCGGACGCCGTGTGTGCACCT
TTCTCCCCCACCATTCCCACACTCCTCTAGAACGGGCTCAATCTTTATGT
GGCCTTCAATTGGTTCAAACAAACTTCCCTCCTAGACAAGGTCTTAATTG
CGAGGAAGGGCAAGGTGGTGAGGCCCGGCACACTTTCGCGGTGGTTTTGT
GACCATTGAGGCTGAGGATATGGATACTAACTTTCCCCCATCCACCGTAC
TCAACAACACAGCATCATGAAGATTAAGACACTGAGTCGGTCCGAAGAGG
CCTTCACCAGGGAGTGCAAAGGCGACGTTGTCAAGGTCTTCCGTAACCTG
GAGCCGGCCCTCCACCCCTTTGACAAGGCCCGCGAATATACCCGGGCGCT
CACGGCTACCAAGCTGGACAAGATGTTTGCCAAACCCCTTGTCGgtgcgt
gtgtggttgtggggtggggttctgggtattatatgactctctggaagagg
tatgggaacgcttgtatgcgtggggctcgtgtccctcagataggctgtaa
gatcaagggtcatgccacagctaatggtgcccttaggcaaggcaggtgcc
cggtacgatcagtctccatcaaagcctacgataatgataagattgcggct
tacaatttcccttcgcccaatcttcattccttattttttttagGCGCCCT
GGACGGGCATACGGACGGTGTCTACTGCTCGGCTCTAAGCAAAAGGAACT
TGGTCCAGTTCCTCACTGGAGCTTGTGACGGCGAGGTGCGGGTGTGGGAT
ATGAACGTGCGCAAATGTGTCTGGCGGGCATACGCACATTCGGGTTTTGT
ACGGGGTCTATCAGTAGCGCCTGACGGTGGCACATTTTTTTCCTGTGGGG
ACAAAACCGTTAAGCAATGGAAGCTGTGCGTGGTTGGGGACACGAGCGAG
gtacgtgatccgcattgcgccctccatcttagtaagtcaccagatcacat
agataatttattcctccctcccacatccctaatagGAACCTTCAGCAATG
AATACCTGGTTGCACACAGAAAGCCTCACTTCCATCGACCACCACTGGCG
GGACACCCGCTTCGCCACCGCCGCCGACTCTCGGGTCTTAGTCTGGGACC
ATGCCCGTTCCAGTCCCATCCAATCCTTCTCCTGGGGCTGCGATGCCATT
TCATGCGTGCGGTATAACCCTGCAGAGCATTCCTTGCTGGCTAGTACCGG
ATCTGATCGAGCCGTGACCCTCTTTGATACCCGCGAAGGGGCCGCGATGC
GCAAAGCAGTGCTGGTTATGCGGTCCAACGCCTTGGCTTGGAACCCCCAG
GAGCCATTGAACTTCACGGTGGCCAGCGAGGATCACAATTTATATACTTT
TGACATGCGGAAGCTGGTGCAGGCCAAGCTCATCCACAAGGACCACGTGG
GGGCAGTCATGGATTTAGCTTTCTCCCCCACTGGGCAGGAGTTTGTCACG
GGCTCCTATGATCGCACTGTGCGTATTTTCAACCACCGGGAGGGACGCAG
TCGCGAGGTGTATCACACCAAGCGAATGCAGCGTATCTTCTGCGTGAATT
TCTCGGGGGATGGGCGGTTTGTCCTGACGGGGTCGGATGACACTAACTTG
CGGATTTGGAAGGCGCAGGCCTCGAAGGCGCTGGGAGCCAAGGTGTCCCG
GGCAGAGAAGAAATTGGAGTACACTGAGGCGTTGAAGAAGCGTTACCAAC
ACATGCCGGAGGTGCGACGTATTGCTAAACACCGCCATGTACCCAAAGCC
ATCAAGAAGGCACAGGAGCTGGTCCGTGTGCAGCAAGACAGCCAGCGCCG
CAAGTCTCAGAACCGCCGAAAGCACGCCAAGCCCGACAGCGACGAGTTCA
AGTTTGTACCGGAACGCAAACAACGGGTCGTAGCCGAGATGGCGTGAGAA
TGTTGCATGCAATGTCATTTGTGCAGGCTTGTAAAAATTACGTACGGGGG
GTTTGAAGAGGAAGCACATCGATAGCAGCGGCGAAAAGTAACAAAGTCAG
TTGTCATAGTTGTG

protein sequence of NO10G02150.1

>NO10G02150.1-protein ID=NO10G02150.1-protein|Name=NO10G02150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=449bp
MKIKTLSRSEEAFTRECKGDVVKVFRNLEPALHPFDKAREYTRALTATKL
DKMFAKPLVGALDGHTDGVYCSALSKRNLVQFLTGACDGEVRVWDMNVRK
CVWRAYAHSGFVRGLSVAPDGGTFFSCGDKTVKQWKLCVVGDTSEEPSAM
NTWLHTESLTSIDHHWRDTRFATAADSRVLVWDHARSSPIQSFSWGCDAI
SCVRYNPAEHSLLASTGSDRAVTLFDTREGAAMRKAVLVMRSNALAWNPQ
EPLNFTVASEDHNLYTFDMRKLVQAKLIHKDHVGAVMDLAFSPTGQEFVT
GSYDRTVRIFNHREGRSREVYHTKRMQRIFCVNFSGDGRFVLTGSDDTNL
RIWKAQASKALGAKVSRAEKKLEYTEALKKRYQHMPEVRRIAKHRHVPKA
IKKAQELVRVQQDSQRRKSQNRRKHAKPDSDEFKFVPERKQRVVAEMA*

protein sequence of NO10G02150.2

>NO10G02150.2-protein ID=NO10G02150.2-protein|Name=NO10G02150.2|organism=Nannochloropsis oceanica|type=polypeptide|length=532bp
MKIKTLSRSEEAFTRECKGDVVKVFRNLEPALHPFDKAREYTRALTATKL
DKMFAKPLVGACVVVGWGSGYYMTLWKRYGNACMRGARVPQIGCKIKGHA
TANGALRQGRCPVRSVSIKAYDNDKIAAYNFPSPNLHSLFFLGALDGHTD
GVYCSALSKRNLVQFLTGACDGEVRVWDMNVRKCVWRAYAHSGFVRGLSV
APDGGTFFSCGDKTVKQWKLCVVGDTSEEPSAMNTWLHTESLTSIDHHWR
DTRFATAADSRVLVWDHARSSPIQSFSWGCDAISCVRYNPAEHSLLASTG
SDRAVTLFDTREGAAMRKAVLVMRSNALAWNPQEPLNFTVASEDHNLYTF
DMRKLVQAKLIHKDHVGAVMDLAFSPTGQEFVTGSYDRTVRIFNHREGRS
REVYHTKRMQRIFCVNFSGDGRFVLTGSDDTNLRIWKAQASKALGAKVSR
AEKKLEYTEALKKRYQHMPEVRRIAKHRHVPKAIKKAQELVRVQQDSQRR
KSQNRRKHAKPDSDEFKFVPERKQRVVAEMA*

Synonyms

Publications